Commit ea15e450 authored by Michael Stadler's avatar Michael Stadler
Browse files

add Mike's requirements

parent 5bc139b1
......@@ -2,11 +2,11 @@
BiocManager::install(ask = FALSE)
# install additional packages and dependencies
pkgs <- c("batchelor", "BiocNeighbors", "Biostrings", "BSgenome", "coop", "dplyr", "e1071", "eisaR",
"fishpond", "GenomeInfoDb", "GenomeInfoDbData", "GenomicFeatures", "GenomicRanges",
"ggplot2", "IRanges", "keras", "knitr", "", "RColorBrewer", "reticulate", "rjson", "rmarkdown",
"rsvd", "Rtsne", "scater", "scran", "Seurat", "SingleCellExperiment", "SummarizedExperiment",
"tensorflow", "tibble", "tidyr", "tximeta")
pkgs <- c("batchelor", "BiocNeighbors", "Biostrings", "BSgenome", "coop", "dplyr", "DropletUtils", "e1071",
"eisaR", "fishpond", "GenomeInfoDb", "GenomeInfoDbData", "GenomicFeatures", "GenomicRanges",
"ggplot2", "IRanges", "keras", "knitr", "LoomExperiment", "", "RColorBrewer",
"reticulate", "rjson", "rmarkdown", "rsvd", "Rtsne", "scater", "scran", "Seurat",
"SingleCellExperiment", "SummarizedExperiment", "tensorflow", "tibble", "tidyr", "tximeta")
BiocManager::install(pkgs, ask = FALSE)
# check if required packages have all been installed
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