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Bilian Xiong
adv_scrnaseq_2020
Commits
ea15e450
Commit
ea15e450
authored
May 26, 2020
by
Michael Stadler
Browse files
add Mike's requirements
parent
5bc139b1
Changes
1
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Side-by-side
install.R
View file @
ea15e450
...
...
@@ -2,11 +2,11 @@
BiocManager
::
install
(
ask
=
FALSE
)
# install additional packages and dependencies
pkgs
<-
c
(
"batchelor"
,
"BiocNeighbors"
,
"Biostrings"
,
"BSgenome"
,
"coop"
,
"dplyr"
,
"
e1071
"
,
"e
isaR
"
,
"fishpond"
,
"GenomeInfoDb"
,
"GenomeInfoDbData"
,
"GenomicFeatures"
,
"GenomicRanges"
,
"ggplot2"
,
"IRanges"
,
"keras"
,
"knitr"
,
"org.Hs.eg.db"
,
"RColorBrewer"
,
"reticulate"
,
"rjson"
,
"rmarkdown"
,
"rsvd"
,
"Rtsne"
,
"scater"
,
"scran"
,
"Seurat"
,
"SingleCellExperiment"
,
"SummarizedExperiment"
,
"tensorflow"
,
"tibble"
,
"tidyr"
,
"tximeta"
)
pkgs
<-
c
(
"batchelor"
,
"BiocNeighbors"
,
"Biostrings"
,
"BSgenome"
,
"coop"
,
"dplyr"
,
"
DropletUtils
"
,
"e
1071
"
,
"eisaR"
,
"fishpond"
,
"GenomeInfoDb"
,
"GenomeInfoDbData"
,
"GenomicFeatures"
,
"GenomicRanges"
,
"ggplot2"
,
"IRanges"
,
"keras"
,
"knitr"
,
"LoomExperiment"
,
"org.Hs.eg.db"
,
"RColorBrewer"
,
"reticulate"
,
"rjson"
,
"rmarkdown"
,
"rsvd"
,
"Rtsne"
,
"scater"
,
"scran"
,
"Seurat"
,
"SingleCellExperiment"
,
"SummarizedExperiment"
,
"tensorflow"
,
"tibble"
,
"tidyr"
,
"tximeta"
)
BiocManager
::
install
(
pkgs
,
ask
=
FALSE
)
# check if required packages have all been installed
...
...
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