Auto-saving for avi.srivastava on branch master from commit b66a6f62

.ipynb_checkpoints/Untitled-checkpoint.ipynb

+%% Cell type:code id: tags:
+
+``` python
+%%bash
+ls
+```
+
+%%%% Output: stream
+
+    adv_scrnaseq_2020.Rproj
+    data
+    Dockerfile
+    environment.yml
+    install.R
+    README.md
+    requirements.txt
+    Untitled.ipynb
+
+%% Cell type:code id: tags:
+
+``` python
+%%bash
+SALMON="/opt/salmon/salmon-latest_linux_x86_64/bin/salmon"
+REF_TXOME_FILE="data/spermatogenesis_subset/GRCm38.gencode.vM21.chr18.chr19.txome.fa"
+INDEX_PATH="data/salmon_index"
+```

Untitled.ipynb

+%% Cell type:code id: tags:
+
+``` python
+%%bash
+ls
+```
+
+%%%% Output: stream
+
+    adv_scrnaseq_2020.Rproj
+    data
+    Dockerfile
+    environment.yml
+    install.R
+    README.md
+    requirements.txt
+    Untitled.ipynb
+
+%% Cell type:code id: tags:
+
+``` python
+%%bash
+SALMON="/opt/salmon/salmon-latest_linux_x86_64/bin/salmon"
+REF_TXOME_FILE="data/spermatogenesis_subset/GRCm38.gencode.vM21.chr18.chr19.txome.fa"
+INDEX_PATH="data/salmon_index"
+```

adv_scrnaseq_2020.Rproj

+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: Sweave
+LaTeX: pdfLaTeX