Commits · master · Michael Stadler / adv_scrnaseq_2020

26 May, 2020 9 commits
- service: dataset add dgn MG_leavout_wallp_VAE_weights.hdf5... · e52b1a72
  Panagiotis Papasaikas authored May 26, 2020
```
service: dataset add dgn MG_leavout_wallp_VAE_weights.hdf5 MG_complete_VAE_weights.hdf5 distinct_palettes.rds MG_complete_VAE_history.rds SCE_MammaryGland.rds
```
  e52b1a72
- renku dataset: committing 5 newly added files · f44e819a
  Panagiotis Papasaikas authored May 26, 2020
  
  f44e819a
- service: dataset create dgn · 21a55b92
  Panagiotis Papasaikas authored May 26, 2020
  
  21a55b92
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · 2351ca1c
  Mike Smith authored May 26, 2020
  
  2351ca1c
- added more hdf5 files · 8b493087
  Mike Smith authored May 26, 2020
  
  8b493087
- pull lfs data by default · 4ea5d897
  Michael Stadler authored May 26, 2020
  
  4ea5d897
- redirect R output · 633680e7
  Michael Stadler authored May 26, 2020
  
  633680e7
- add project tag to ensure cache availability · d9fdeee7
  Michael Stadler authored May 26, 2020
  
  d9fdeee7
- add Mike's requirements · ea15e450
  Michael Stadler authored May 26, 2020
  
  ea15e450
25 May, 2020 13 commits
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · 5bc139b1
  Michael Stadler authored May 25, 2020
  
  5bc139b1
- add org.Hs.eg.db · 6383fa07
  Michael Stadler authored May 25, 2020
  
  6383fa07
- delete file in wrong place · 539967d0
  Mike Smith authored May 25, 2020
  
  539967d0
- adding h5 file via gitlab · d633c3e1
  Mike Smith authored May 25, 2020
  
  d633c3e1
- Merge branch 'master' of https://renkulab.io/gitlab/stadler.michael/adv_scrnaseq_2020 · fb0b3903
  Charlotte Soneson authored May 25, 2020
  
  fb0b3903
- renku dataset add spermatogenesis_subset... · 244638fc
  Charlotte Soneson authored May 25, 2020
```
renku dataset add spermatogenesis_subset data/spermatogenesis_subset/GRCm38.gencode.vM21.chr18.chr19.tgMap.txt
```
  244638fc
- renku dataset: committing 1 newly added files · 42254909
  Charlotte Soneson authored May 25, 2020
  
  42254909
- use tensorflow 2.1.0 · ef90b999
  Michael Stadler authored May 25, 2020
  
  ef90b999
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · 73506c4c
  Michael Stadler authored May 25, 2020
  
  73506c4c
- use tensorflow 2.1.1 · 941f1851
  Michael Stadler authored May 25, 2020
  
  941f1851
- Add tgMap · 0b2fd3a4
  Charlotte Soneson authored May 25, 2020
  
  0b2fd3a4
- remove obsolete data///\\ · edd19d3c
  Panagiotis Papasaikas authored May 25, 2020
  
  edd19d3c
- renku dataset rm mammary_gland · 99527bb5
  Panagiotis Papasaikas authored May 25, 2020
  
  99527bb5
24 May, 2020 1 commit
- Delete .gitkeep · 9b8b4a7b
  Panagiotis Papasaikas authored May 24, 2020
  
  9b8b4a7b
22 May, 2020 4 commits
- service: dataset add mammary_gland SCE_TabulaMuris_filteredgenes_annotated.rds · 3cc060ad
  Panagiotis Papasaikas authored May 22, 2020
  
  3cc060ad
- renku dataset: committing 1 newly added files · 20974580
  Panagiotis Papasaikas authored May 22, 2020
  
  20974580
- service: dataset create mammary_gland · ac72e334
  Panagiotis Papasaikas authored May 22, 2020
  
  ac72e334
- New directory for the DGNs section · 8361ab32
  Panagiotis Papasaikas authored May 22, 2020
  
  8361ab32
21 May, 2020 4 commits
- remove version requirements · 7313664e
  Michael Stadler authored May 21, 2020
  
  7313664e
- remove quotes · 04142dd9
  Michael Stadler authored May 21, 2020
  
  04142dd9
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · 210e4373
  Michael Stadler authored May 21, 2020
  
  210e4373
- add Alma's requirements · 52ffb430
  Michael Stadler authored May 21, 2020
  
  52ffb430
20 May, 2020 7 commits

Update data/spatial-transcriptomics/mouse-brain/curated/mouse-brain.h5ad.gz,... · 53d21a1d

Alma Andersson authored May 20, 2020

Update data/spatial-transcriptomics/mouse-brain/curated/mouse-brain.h5ad.gz, data/spatial-transcriptomics/lazy/lda.pickle, data/spatial-transcriptomics/lazy/prop/prop-bc-A1.tsv, data/spatial-transcriptomics/lazy/prop/prop-bc-A2.tsv files

53d21a1d

Deleted data/spatial-transcriptomics/bc/raw/A1/spatial/aligned_fiducials.jpg,... · 84a204d3

Alma Andersson authored May 20, 2020

Deleted data/spatial-transcriptomics/bc/raw/A1/spatial/aligned_fiducials.jpg, data/spatial-transcriptomics/bc/raw/A1/spatial/detected_tissue_image.jpg, data/spatial-transcriptomics/bc/raw/A1/spatial/scalefactors_json.json, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_hires_image.png, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_lowres_image.png, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_positions_list.csv, data/spatial-transcriptomics/bc/raw/A1/V1_Breast_Cancer_Block_A_Section_1_filtered_feature_bc_matrix.h5, data/spatial-transcriptomics/bc/raw/A2/spatial/aligned_fiducials.jpg, data/spatial-transcriptomics/bc/raw/A2/spatial/detected_tissue_image.jpg, data/spatial-transcriptomics/bc/raw/A2/spatial/scalefactors_json.json, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_hires_image.png, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_lowres_image.png, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_positions_list.csv, data/spatial-transcriptomics/bc/raw/A2/V1_Breast_Cancer_Block_A_Section_2_filtered_feature_bc_matrix.h5, data/spatial-transcriptomics/bc/curated/bc_A1.h5ad.gz, data/spatial-transcriptomics/bc/curated/bc_A2.h5ad.gz files

84a204d3

service: dataset add spatial-transcriptomics bc · 02c1fb10
Alma Andersson authored May 20, 2020

02c1fb10
renku dataset: committing 18 newly added files · e937cd4c
Alma Andersson authored May 20, 2020

e937cd4c
service: dataset create spatial-transcriptomics · efbd343e
Alma Andersson authored May 20, 2020

efbd343e
service: dataset create spatial · 2ff44140
Alma Andersson authored May 20, 2020

2ff44140
add Pan's requirements · 73ed4138
Michael Stadler authored May 20, 2020

73ed4138

19 May, 2020 1 commit
- add sinfo python package · 1aae39d3
  Michael Stadler authored May 19, 2020
  
  1aae39d3
18 May, 2020 1 commit
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · cc7f07a3
  Michael Stadler authored May 18, 2020
  
  cc7f07a3