Commit f6c91b7d authored by Philippe Grosjean's avatar Philippe Grosjean
Browse files

Update install.R

parent 1b19c175
Pipeline #245257 canceled with stage
in 4 seconds
# From SDD bookdowns
install.packages(c("anytime", "assertthat", "backports", "base64enc", "bit",
"bit64", "blob", "bookdown", "cli", "crayon", "curl", "data.table", "DBI",
"devtools", "digest", "evaluate", "fansi", "fastmap", "glue", "htmltools",
"htmlwidgets", "httpuv", "httr", "jsonlite", "knitr", "later", "lattice",
"learnr", "lintr", "magrittr", "markdown", "memoise", "microbenchmark",
"mime", "mongolite", "nanotime", "odbc", "palmerpenguins", "PKI", "promises",
"R6", "Rcpp", "RcppCCTZ", "remotes", "rlang", "rmarkdown", "rprojroot",
"RSQLite", "sessioninfo", "shiny", "stringi", "stringr", "SuppDists", "vctrs",
"withr", "xfun", "xtable", "yaml", "zoo"))
# From SDD bookdowns, BioDataScienceX & r.snippets (except ggvis & directlabels)
# (search for 'library(', 'require(', 'package =' and ::)
install.packages(c("ade4", "anytime", "ape", "assertthat", "automap",
"available", "backports", "base64enc", "bit", "bit64", "blob", "bookdown",
"broom", "ca", "car", "cartography", "circular", "cli", "corrplot", "crayon",
"curl", "data.table", "DBI", "dbplyr", "devtools", "DiagrammeR", "digest",
"DT", "evaluate", "factoextra", "FactoMineR", "fansi", "faraway",
"fastcluster", "fastmap", "flashClust", "fortunes", "flipdownr", "GGally",
"gganimate", "ggdendro", "ggfortify", "ggpubr", "ggrepel", "ggridges", "ggsn",
"ggsom", "glue", "gridExtra", "gstat", "here", "htmltools", "htmlwidgets",
"httpuv", "httr", "ipred", "iterators", "janitor", "jsonlite", "knitr",
"kohonen", "later", "lattice", "lintr", "lobstr", "lme4", "lmerTest",
"lubridate", "magrittr", "mapedit", "mapview", "markdown", "memoise",
"microbenchmark", "mime", "miniUI", "mlbench", "modelr", "mongolite",
"mosaic", "multcomp", "naniar", "nanotime", "nparcomp", "odbc",
"palmerpenguins", "pander", "PKI", "plotly", "pROC", "promises", "pryr",
"purrr", "pwr", "R6", "raster", "RColorBrewer", "Rcpp", "RcppCCTZ", "readxl",
"rgl", "remotes", "rlang", "rmarkdown", "ROCR", "rprojroot", "RSQLite", "sf",
"sessioninfo", "shiny", "shinyjs", "shinytest", "skimr", "spData", "stars",
"stringi", "stringr", "SuppDists", "tidyr", "tmap", "tmaptools", "TSA",
"UsingR", "vctrs", "vegan", "vembedr", "viridis", "visdat", "withr", "xfun",
"xtable", "yaml", "zoo"))
# SciViews::R
......@@ -28,5 +40,44 @@ remotes::install_url("
remotes::install_url("", upgrade = "never")
remotes::install_url("", upgrade = "never")
remotes::install_url("", upgrade = "never")
# More R packages ... BioDataScience|1|2|3, learnitdown, gradethis, ...
remotes::install_github("rstudio/learnr@64cbd2d", upgrade = "never")
remotes::install_github("rstudio/gradethis@e9b10ae", upgrade = "never")
# More R Markdown formats
install.packages(c("distill", "flexdashboard", "pagedown", "posterdown",
"rticles", "xaringan"))
# More RStudio Addins
install.packages(c("blogdown", "citr", "convertr", "compareWith", "covr",
"esquisse", "ggExtra", "golem", "pins", "pkgdown", "questionr", "reprex",
"styler", "todor"))
# More useful package not used in the courses
install.packages(c("abind", "agricolae", "akima", "archivit", "archivit.github",
"arkdb", "babynames", "bench", "BEST", "bmp", "callr", "captioner", "corrr",
"datapackage.r", "datasauRus", "digest", "ditsr6", "dtplyr", "e1071", "egg",
"emayili", "ensurer", "exams", "fastai", "fauxpas", "fda", "feasts",
"filehash", "filehashSQLite", "flashlight", "flextable", "fs", "fst",
"ftExtra", "future", "future.apply", "future.callr", "generics", "gert",
"ggconf", "ggcorrplot", "ggdist", "ggfocus", "ggforce", "ggimage", "ggiraph",
"gglm", "ggmisc", "ggmosaic", "ggRandomForests", "ggsignif", "ggTimeSeries",
"ggtext", "ggVennDiagram", "ggwordcloud", "gistr", "gitcreds", "goodpractice",
"googlesheets4", "gt", "haven", "hexSticker", "hms", "import", "infer",
"inline", "ipred", "ivred", "jpeg", "jsonlite", "kableExtra", "knitcitations",
"latex2exp", "leafem", "leaflet", "leaps", "lifecycle", "listcomp", "logger",
"modelsummary", "moderndive", "needs", "nortest", "nycflights13",
"officedown", "officer", "opencpu", "pagedown", "patchwork", "piggyback",
"plumber", "png", "prettyunits", "printr", "quantreg", "R62S3", "ranger",
"RANN", "RcppExamples", "Rd2roxygen", "recipes", "renv", "reticulate",
"rpart.plot", "rvest", "rvg", "seasonal", "shinybusy", "shinydashboard",
"shinylogs", "shinytoastr", "smotefamily", "spelling", "startgazer",
"stlplus", "survminer", "svDialogs", "svGUI", "svSweave", "sys", "tab",
"tables", "tableschema.r", "tactile", "targets", "tester", "texreg", "tiff",
"titanic", "varSelRF", "vip", "vroom", "writexl", "xgboost", "xts",
"zeallot", "zip", "ztable"))
# BioDataScience|1|2|3 are installed in the template post installation
# (in post-init.R) to make sure we got latest versions
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment