Update install.R

install.R

-# From SDD bookdowns, BioDataScienceX & r.snippets (except ggvis & directlabels)
-# (search for 'library(', 'require(', 'package =' and ::)
-install.packages(c("ade4", "anytime", "ape", "assertthat", "automap",
-  "available", "backports", "base64enc", "bit", "bit64", "blob", "bookdown",
-  "broom", "ca", "car", "cartography", "circular", "cli", "corrplot", "crayon",
-  "curl", "data.table", "DBI", "dbplyr", "devtools", "DiagrammeR", "digest",
-  "DT", "evaluate", "factoextra", "FactoMineR", "fansi", "faraway",
-  "fastcluster", "fastmap", "flashClust", "fortunes", "flipdownr", "GGally",
-  "gganimate", "ggdendro", "ggfortify", "ggpubr", "ggrepel", "ggridges", "ggsn",
-  "ggsom", "glue", "gridExtra", "gstat", "here", "htmltools", "htmlwidgets",
-  "httpuv", "httr", "ipred", "iterators", "janitor", "jsonlite", "knitr",
-  "kohonen", "later", "lattice", "lintr", "lobstr", "lme4", "lmerTest",
-  "lubridate", "magrittr", "mapedit", "mapview", "markdown", "memoise",
-  "microbenchmark", "mime", "miniUI", "mlbench", "modelr", "mongolite",
-  "mosaic", "multcomp", "naniar", "nanotime", "nparcomp", "odbc",
-  "palmerpenguins", "pander", "PKI", "plotly", "pROC", "promises", "pryr",
-  "purrr", "pwr", "R6", "raster", "RColorBrewer", "Rcpp", "RcppCCTZ", "readxl",
-  "rgl", "remotes", "rlang", "rmarkdown", "ROCR", "rprojroot", "RSQLite", "sf",
-  "sessioninfo", "shiny", "shinyjs", "shinytest", "skimr", "spData", "stars",
-  "stringi", "stringr", "SuppDists", "tidyr", "tmap", "tmaptools", "TSA",
-  "UsingR", "vctrs", "vegan", "vembedr", "viridis", "visdat", "withr", "xfun",
-  "xtable", "yaml", "zoo"))
 
-# SciViews::R
-#remotes::install_github("SciViews/svMisc")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/svMisc_1.2.1.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/flow")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/flow_1.1.0.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/data.io")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/data.io_1.3.0.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/chart")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/chart_1.3.0.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/exploreit")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/exploreit_0.1.0.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/SciViews")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/SciViews_1.1.2.tar.gz", upgrade = "never")
-#remotes::install_github("SciViews/mlearning")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/mlearning_1.0.6.tar.gz", upgrade = "never")
-#remotes::install_github("phgrosjean/pastecs")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/pastecs_1.4.0.tar.gz", upgrade = "never")
-#remotes::install_github("phgrosjean/aurelhy")
-remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/aurelhy_1.0.8.tar.gz", upgrade = "never")
-#remotes::install_github("phgrosjean/learnitdown")
-#remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/learnitdown_1.3.1.tar.gz", upgrade = "never")
-
-#remotes::install_github("rstudio/learnr@64cbd2d", upgrade = "never")
-#remotes::install_github("rstudio/gradethis@e9b10ae", upgrade = "never")
-
-# More R Markdown formats
-#install.packages(c("distill", "flexdashboard", "pagedown", "posterdown",
-#  "rticles", "xaringan"))
-
-# More RStudio Addins
-#install.packages(c("blogdown", "convertr", "covr", "esquisse", "ggExtra",
-#  "golem", "pins", "pkgdown", "questionr", "reprex", "styler", "todor"))
-
-# More useful package not used in the courses
-#install.packages(c("abind", "agricolae", "akima", "archivist",
-#  "archivist.github", "arkdb", "babynames", "bench", "bmp", "callr",
-#  "captioner", "corrr", "datapackage.r", "datasauRus", "digest", "distsr6",
-#  "dtplyr", "e1071", "egg", "emayili", "ensurer", "exams", "fastai", "fauxpas",
-#  "fda", "feasts", "filehash", "filehashSQLite", "flashlight", "flextable",
-#  "fs", "fst", "ftExtra", "future", "future.apply", "future.callr", "generics",
-#  "gert", "ggconf", "ggcorrplot", "ggdist", "ggfocus", "ggforce", "ggimage",
-#  "ggiraph", "gglm", "ggmosaic", "ggRandomForests", "ggsignif", "ggtext",
-#  "ggVennDiagram", "ggwordcloud", "gistr", "gitcreds", "goodpractice",
-#  "googlesheets4", "gt", "haven", "hexSticker", "hms", "import", "infer",
-#  "inline", "ipred", "ivreg", "jpeg", "jsonlite", "kableExtra", "knitcitations",
-#  "latex2exp", "leafem", "leaflet", "leaps", "lifecycle", "listcomp", "logger",
-#  "modelsummary", "moderndive", "needs", "nortest", "nycflights13",
-#  "officedown", "officer", "opencpu", "pagedown", "patchwork", "piggyback",
-#  "plumber", "png", "prettyunits", "printr", "quantreg", "R62S3", "ranger",
-#  "RANN", "RcppExamples", "Rd2roxygen", "recipes", "renv", "reticulate",
-#  "rpart.plot", "rvest", "rvg", "seasonal", "shinybusy", "shinydashboard",
-#  "shinylogs", "shinytoastr", "smotefamily", "spelling", "stargazer",
-#  "stlplus", "survminer", "svDialogs", "svGUI", "svSweave", "sys", "tab",
-#  "tables", "tableschema.r", "tactile", "targets", "tester", "texreg", "tiff",
-#  "titanic", "varSelRF", "vip", "vroom", "writexl", "xgboost", "xts",
-#  "zeallot", "zip", "ztable"))
-
-# BioDataScience|1|2|3 are installed later to make sure we got latest versions