Commit dc0c0b89 authored by Philippe Grosjean's avatar Philippe Grosjean
Browse files

Update install.R

parent d59816e3
Pipeline #245643 passed with stage
in 6 minutes and 17 seconds
# From SDD bookdowns, BioDataScienceX & r.snippets (except ggvis & directlabels)
# (search for 'library(', 'require(', 'package =' and ::)
install.packages(c("ade4", "anytime", "ape", "assertthat", "automap",
"available", "backports", "base64enc", "bit", "bit64", "blob", "bookdown",
"broom", "ca", "car", "cartography", "circular", "cli", "corrplot", "crayon",
"curl", "data.table", "DBI", "dbplyr", "devtools", "DiagrammeR", "digest",
"DT", "evaluate", "factoextra", "FactoMineR", "fansi", "faraway",
"fastcluster", "fastmap", "flashClust", "fortunes", "flipdownr", "GGally",
"gganimate", "ggdendro", "ggfortify", "ggpubr", "ggrepel", "ggridges", "ggsn",
"ggsom", "glue", "gridExtra", "gstat", "here", "htmltools", "htmlwidgets",
"httpuv", "httr", "ipred", "iterators", "janitor", "jsonlite", "knitr",
"kohonen", "later", "lattice", "lintr", "lobstr", "lme4", "lmerTest",
"lubridate", "magrittr", "mapedit", "mapview", "markdown", "memoise",
"microbenchmark", "mime", "miniUI", "mlbench", "modelr", "mongolite",
"mosaic", "multcomp", "naniar", "nanotime", "nparcomp", "odbc",
"palmerpenguins", "pander", "PKI", "plotly", "pROC", "promises", "pryr",
"purrr", "pwr", "R6", "raster", "RColorBrewer", "Rcpp", "RcppCCTZ", "readxl",
"rgl", "remotes", "rlang", "rmarkdown", "ROCR", "rprojroot", "RSQLite", "sf",
"sessioninfo", "shiny", "shinyjs", "shinytest", "skimr", "spData", "stars",
"stringi", "stringr", "SuppDists", "tidyr", "tmap", "tmaptools", "TSA",
"UsingR", "vctrs", "vegan", "vembedr", "viridis", "visdat", "withr", "xfun",
"xtable", "yaml", "zoo"))
# SciViews::R
#remotes::install_github("SciViews/svMisc")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/svMisc_1.2.1.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/flow")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/flow_1.1.0.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/data.io")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/data.io_1.3.0.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/chart")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/chart_1.3.0.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/exploreit")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/exploreit_0.1.0.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/SciViews")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/SciViews_1.1.2.tar.gz", upgrade = "never")
#remotes::install_github("SciViews/mlearning")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/mlearning_1.0.6.tar.gz", upgrade = "never")
#remotes::install_github("phgrosjean/pastecs")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/pastecs_1.4.0.tar.gz", upgrade = "never")
#remotes::install_github("phgrosjean/aurelhy")
remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/aurelhy_1.0.8.tar.gz", upgrade = "never")
#remotes::install_github("phgrosjean/learnitdown")
#remotes::install_url("https://filedn.com/lzGVgfOGxb6mHFQcRn9ueUb/svbox2021/learnitdown_1.3.1.tar.gz", upgrade = "never")
#remotes::install_github("rstudio/learnr@64cbd2d", upgrade = "never")
#remotes::install_github("rstudio/gradethis@e9b10ae", upgrade = "never")
# More R Markdown formats
#install.packages(c("distill", "flexdashboard", "pagedown", "posterdown",
# "rticles", "xaringan"))
# More RStudio Addins
#install.packages(c("blogdown", "convertr", "covr", "esquisse", "ggExtra",
# "golem", "pins", "pkgdown", "questionr", "reprex", "styler", "todor"))
# More useful package not used in the courses
#install.packages(c("abind", "agricolae", "akima", "archivist",
# "archivist.github", "arkdb", "babynames", "bench", "bmp", "callr",
# "captioner", "corrr", "datapackage.r", "datasauRus", "digest", "distsr6",
# "dtplyr", "e1071", "egg", "emayili", "ensurer", "exams", "fastai", "fauxpas",
# "fda", "feasts", "filehash", "filehashSQLite", "flashlight", "flextable",
# "fs", "fst", "ftExtra", "future", "future.apply", "future.callr", "generics",
# "gert", "ggconf", "ggcorrplot", "ggdist", "ggfocus", "ggforce", "ggimage",
# "ggiraph", "gglm", "ggmosaic", "ggRandomForests", "ggsignif", "ggtext",
# "ggVennDiagram", "ggwordcloud", "gistr", "gitcreds", "goodpractice",
# "googlesheets4", "gt", "haven", "hexSticker", "hms", "import", "infer",
# "inline", "ipred", "ivreg", "jpeg", "jsonlite", "kableExtra", "knitcitations",
# "latex2exp", "leafem", "leaflet", "leaps", "lifecycle", "listcomp", "logger",
# "modelsummary", "moderndive", "needs", "nortest", "nycflights13",
# "officedown", "officer", "opencpu", "pagedown", "patchwork", "piggyback",
# "plumber", "png", "prettyunits", "printr", "quantreg", "R62S3", "ranger",
# "RANN", "RcppExamples", "Rd2roxygen", "recipes", "renv", "reticulate",
# "rpart.plot", "rvest", "rvg", "seasonal", "shinybusy", "shinydashboard",
# "shinylogs", "shinytoastr", "smotefamily", "spelling", "stargazer",
# "stlplus", "survminer", "svDialogs", "svGUI", "svSweave", "sys", "tab",
# "tables", "tableschema.r", "tactile", "targets", "tester", "texreg", "tiff",
# "titanic", "varSelRF", "vip", "vroom", "writexl", "xgboost", "xts",
# "zeallot", "zip", "ztable"))
# BioDataScience|1|2|3 are installed later to make sure we got latest versions
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