GitLab

renku-transaction: e8c9c9cae59d4d30af754bb7e8d6486c

	data/omni_batch_mnn/cellbench_20_none_20_size_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_20_none_20_inverse_corrected_counts.mtx.gz

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renku-transaction: c0941d27934d4e3c95a9e0eb1c8a9728

	data/omni_batch_mnn/cellbench_20_none_20_auto_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_10_sig_20_size_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_10_sig_20_inverse_corrected_counts.mtx.gz

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renku-transaction: 5cbdf6b691e848a4adc37661ce361c7a

	data/omni_batch_mnn/cellbench_10_sig_20_auto_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_10_none_20_size_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_10_none_20_inverse_corrected_counts.mtx.gz

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	data/omni_batch_mnn/cellbench_10_none_20_auto_corrected_counts.mtx.gz

renku-transaction: b253b6a2a57a45d7bd8effcf85400a40

	data/omni_batch_processed/norm_counts_csf_patient.mtx.gz --input
	data/omni_batch_processed/hvg_csf_patient.json --input
	data/omni_batch_processed/meta_csf_patient.json -- Rscript --vanilla src/mnn.R
	--corrected_dim_file=data/omni_batch_mnn/csf_patient_20_sig_10_auto_red_dim.mtx.gz
	--corrected_counts=data/omni_batch_mnn/csf_patient_20_sig_10_auto_corrected_counts.mtx.gz
	--dataset_name=csf_patient --order=auto --hvg_file=data/omni_batch_processed/hvg_csf_patient.json
	--meta_file=data/omni_batch_processed/meta_csf_patient.json --k=10
	--count_file=data/omni_batch_processed/norm_counts_csf_patient.mtx.gz --d=20 --hvg=sig

renku-transaction: 4f682a24835542d28eaf9621c1c2ae93

	data/omni_batch_processed/norm_counts_cellbench.mtx.gz --input
	data/omni_batch_processed/hvg_cellbench.json --input data/omni_batch_processed/meta_cellbench.json --
	Rscript --vanilla src/mnn.R
	--corrected_dim_file=data/omni_batch_mnn/cellbench_20_sig_10_auto_red_dim.mtx.gz
	--corrected_counts=data/omni_batch_mnn/cellbench_20_sig_10_auto_corrected_counts.mtx.gz
	--dataset_name=cellbench --order=auto --hvg_file=data/omni_batch_processed/hvg_cellbench.json
	--meta_file=data/omni_batch_processed/meta_cellbench.json --k=10
	--count_file=data/omni_batch_processed/norm_counts_cellbench.mtx.gz --d=20 --hvg=sig

renku-transaction: 0674986445994da098e0cf83fc4f2a54

renku run --name csf_patient --input src/mnn.R --input data/omni_batch_processed/norm_counts_csf_...

renku run --name cellbench --input src/mnn.R --input data/omni_batch_processed/norm_counts_cellbe...