GitLab

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	data/omni_batch_processed/norm_counts_csf_patient.mtx.gz --input
	data/omni_batch_processed/hvg_csf_patient.json --input
	data/omni_batch_processed/meta_csf_patient.json -- Rscript --vanilla src/mnn.R
	--corrected_dim_file=data/omni_batch_mnn/csf_patient_20_sig_10_auto_red_dim.mtx.gz
	--corrected_counts=data/omni_batch_mnn/csf_patient_20_sig_10_auto_corrected_counts.mtx.gz
	--dataset_name=csf_patient --order=auto --hvg_file=data/omni_batch_processed/hvg_csf_patient.json
	--meta_file=data/omni_batch_processed/meta_csf_patient.json --k=10
	--count_file=data/omni_batch_processed/norm_counts_csf_patient.mtx.gz --d=20 --hvg=sig

renku-transaction: 4f682a24835542d28eaf9621c1c2ae93

	data/omni_batch_processed/norm_counts_cellbench.mtx.gz --input
	data/omni_batch_processed/hvg_cellbench.json --input data/omni_batch_processed/meta_cellbench.json --
	Rscript --vanilla src/mnn.R
	--corrected_dim_file=data/omni_batch_mnn/cellbench_20_sig_10_auto_red_dim.mtx.gz
	--corrected_counts=data/omni_batch_mnn/cellbench_20_sig_10_auto_corrected_counts.mtx.gz
	--dataset_name=cellbench --order=auto --hvg_file=data/omni_batch_processed/hvg_cellbench.json
	--meta_file=data/omni_batch_processed/meta_cellbench.json --k=10
	--count_file=data/omni_batch_processed/norm_counts_cellbench.mtx.gz --d=20 --hvg=sig

renku-transaction: 0674986445994da098e0cf83fc4f2a54

renku run --name csf_patient --input src/mnn.R --input data/omni_batch_processed/norm_counts_csf_...

renku run --name cellbench --input src/mnn.R --input data/omni_batch_processed/norm_counts_cellbe...