LEAVE_II:c66dc0a282093fd7b2cd59f870fbf284dc3c8f5c commitshttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commits/c66dc0a282093fd7b2cd59f870fbf284dc3c8f5c2021-07-16T21:46:22+00:00https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/c66dc0a282093fd7b2cd59f870fbf284dc3c8f5clambdify debug in simpler_model.ipynb2021-07-16T21:46:22+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/6ef29e2d01dc61bc16e89946ca6556d817800c0bfix minor bug in simpler_model_ipynb (sympy lamdify import)2021-07-16T21:45:13+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/5c1c14ac3aa9c22a1676d6efaa76028ab854d43atrue number of run in simpler_model.ipynb2021-07-16T21:41:54+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/d575c97fb2264fc43cb0752a5f3e9a0f3e2dcbe5ready to run renku, sympy results investigation, change the statistical...2021-07-16T21:40:48+00:00Oscar Corviocorvi@engees.euready to run renku, sympy results investigation, change the statistical analysis graphs at Howard Springs (and nb of runs), delete useless graphs when group plots
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/1dc93ed3c91f7e85d1760042b0d71026c449d368investigating the effect of wind speed in simpler_model.ipynb2021-07-16T11:57:49+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/43a65eabf24b5b96be087e1efbb75ffb992cd5cfsimpler_model.ipynb : modified the time serie plot (moving average of 3 days)...2021-07-16T08:27:39+00:00Oscar Corviocorvi@engees.eusimpler_model.ipynb : modified the time serie plot (moving average of 3 days), added RVE and MAE as metrics, created pandas data frame out of it and export them as tex tables, modify remku command to account for tex files
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/4ee49686d6bcf93d90cb254cace1a1b77c2ddd8dmodify sensitivity analysis plot2021-07-15T15:36:49+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/740e58fcef514a18df233ba23e8c2fd022707cb1sensitivity analysis regarding the stress factor shape parameter2021-07-15T15:20:25+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/96db39f4728cf49153af4f391cd6ec5d29ae42bacreate the stress_factor_shape.ipynb notebook2021-07-15T09:06:33+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/4e0ca8aa37dd2d5fc2c1c32d6430704bae3c8b61add information in the description of the different models2021-07-14T13:55:13+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/b86d901ccf8d9788b862185096247e9677d1b458set up renku command for simpler_model.ipynb, not run yet as computation expe...2021-07-14T13:37:59+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/0fed0d02ba2f2166edea7ebaac21b1c94e4f9282simpler_model.ipynb ok2021-07-14T13:32:34+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/ec4e6fe1eea080994fc1360c51ee87d24aad3a23Remko's comment added -> graphs labels, histogram with equal bins,...2021-07-14T10:46:25+00:00Oscar Corviocorvi@engees.euRemko's comment added -> graphs labels, histogram with equal bins, modification of the VPD computation leading to consistent results
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/3d8dbdbdae2debfb4000a3f54d9bd42f8037f18brenku run papermill...2021-07-14T08:10:58+00:00Oscar Corviocorvi@engees.eurenku run papermill notebooks/Finished_project/meaning_stress_factor/meaning_stress_factor.ipynb ...https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/9125b45093979eb0b80b99123a8aa3f691a3845drenku run: committing 4 newly added files2021-07-14T08:10:57+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/a2d5ec86e4cd127648541aed524257d65b6b3d9cfix error in meaning_stress_factor.ipynb2021-07-14T08:10:12+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/78e5f7d5fb8cea03bb5b06b211ee19dfe19508eesetting up renku for the meaning_stress_factor.ipynb file, waiting to run it2021-07-14T08:07:15+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/153f966f9634ba1ebabfd4bdc9b1853bbd305aderenku run papermill...2021-07-14T07:26:07+00:00Oscar Corviocorvi@engees.eurenku run papermill notebooks/Finished_project/location_stress_factor/location_stress_factor.ipyn...https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/48c55b53fb13906348de051a215e644f15d4837erenku run: committing 11 newly added files2021-07-14T07:26:06+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/a77af356d012d5fa58416a6c7519895c88aaa92dfix typing error in renku command, add -p key word before each argument2021-07-14T06:53:39+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/608e6d6b51efa29b72fe99248a3dd83374b05b94fix typing error in renku command2021-07-14T06:50:30+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/458c5c423fda765180073c3019e45bb30e7d9305set up Renku for the location_stress_factor.ipynb, waiting to test it2021-07-14T06:49:05+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/93d9113bc28ddbaeadfdaf4ae405d1d5ac3c238bfinish the meaning_stress_factor.ipynb thing2021-07-13T20:35:25+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/77e36d68dd7b89f38c8f465cb7b7649d4e7c2e97fix the bounds problem (shgo algorithm) ensuring the convergence of the...2021-07-13T19:32:01+00:00Oscar Corviocorvi@engees.eufix the bounds problem (shgo algorithm) ensuring the convergence of the PM_run_cst function in the meaning_stress_factor.ipynb notebook
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/79f94d06610986771b5241b0b10e80031296fed9removing copy_location_stress_fact.ipynb, investigating the calibration bound...2021-07-13T18:57:42+00:00Oscar Corviocorvi@engees.euremoving copy_location_stress_fact.ipynb, investigating the calibration bounds of the functions instead
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/a40cb62f9f4d1a2b6f68f97969b34f242d6f7bfdupdating the copy_location_stress_fact file --> discover the problem of the...2021-07-13T16:32:16+00:00Oscar Corviocorvi@engees.euupdating the copy_location_stress_fact file --> discover the problem of the fPAR coeff --> to be fixed and opening an issue on renkulab
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/f10ff4f729d297dd21f46424345116dc433fd1efadd the sensitivity analysis to atmospheric factors in terms of relative...2021-07-13T15:57:49+00:00Oscar Corviocorvi@engees.euadd the sensitivity analysis to atmospheric factors in terms of relative changes in location_stress_factor.ipynb
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/0820d1b729e5c818ef1a886f635f1dd66737c5e0corrected location_stress_factor.ipynb2021-07-13T15:29:39+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/3217ae38e6daa422903f395062ad592e63b8b183second experiment on the meaning of the stress factor in meaning_stress_facto...2021-07-13T10:13:21+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/fe1b49804d9e909c30890335dde6c0adf4da59f9add beginning of the meaning of the stress factor in meanin_stress_factor.ipynb2021-07-12T22:07:40+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/eaee969a973f082ac883980f7dbc076f56125f22creating meaning_stress_factor.ipynb2021-07-12T14:54:58+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/e5d31b17733d34d732c86c839398fca47623d9e1presentation of the jupyter notebook location_stress_factor.ipynb2021-07-12T09:57:44+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/8c8b2a62a66ff6edfc81fe3904d7fc764cb3e0dasensitivity analysis for the simples varying and constant surface resistance...2021-07-12T09:33:53+00:00Oscar Corviocorvi@engees.eusensitivity analysis for the simples varying and constant surface resistance models in location_stress_factor.ipynb
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/d171d25930b82b0ffb70e4388d00915c24998ff9mutlisite analysis in location_stress_factor.ipynb2021-07-12T08:02:22+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/20f2b1104e40a5c8d80f6dd005586b78c4e33972histogram to assess different sites, location_stress_factor.ipynb2021-07-11T22:01:56+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/5a102875cb4d10c962080a59747275722ef8d749finish to implement the first simple case of comparison stress factor...2021-07-11T17:22:02+00:00Oscar Corviocorvi@engees.eufinish to implement the first simple case of comparison stress factor position, only one site and one year in location_stress_factor.ipynb
https://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/b5cb2ccefe263ee72590a4ab65d300c75b3aeef0scipy optimize module ready in location_stress_factor.ipynb2021-07-11T13:36:29+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/264d2da833704ea7fd3cad2063a8e32f314c3aeaadd and test the calibration in location_stress_factor.ipynb2021-07-10T21:04:56+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/f818c59ee05e2f50e05f7d27188a406e99498f58set up the function part of the location_stress_factor.ipynb in the Finished ...2021-07-09T19:43:46+00:00Oscar Corviocorvi@engees.euhttps://gitlab.renkulab.io/ocorvi/leave-ii/-/commit/564274e7bf702aad1c7ca1f3fb5979f4411a1426Finished project folder created. This contains the definitive files of the...2021-07-09T19:10:17+00:00Oscar Corviocorvi@engees.euFinished project folder created. This contains the definitive files of the project - working on the location_stress_factor.ipynb file at the moment