Commit 5c1c14ac authored by Oscar Corvi's avatar Oscar Corvi
Browse files

true number of run in simpler_model.ipynb

parent d575c97f
Pipeline #230909 passed with stage
in 36 seconds
......@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "markdown",
"id": "thrown-remainder",
"id": "stable-fields",
"metadata": {},
"source": [
"# **Location of the stress factor in potential evapo-transpiration models**"
......@@ -10,7 +10,7 @@
},
{
"cell_type": "markdown",
"id": "growing-least",
"id": "respective-above",
"metadata": {
"slideshow": {
"slide_type": "slide"
......@@ -62,7 +62,7 @@
},
{
"cell_type": "markdown",
"id": "removed-former",
"id": "thousand-account",
"metadata": {},
"source": [
"# Part II - Functions set up"
......@@ -70,7 +70,7 @@
},
{
"cell_type": "markdown",
"id": "expressed-party",
"id": "female-rapid",
"metadata": {},
"source": [
"## Importing relevant packages"
......@@ -79,7 +79,7 @@
{
"cell_type": "code",
"execution_count": 1,
"id": "peaceful-orange",
"id": "pointed-planning",
"metadata": {},
"outputs": [
{
......@@ -145,7 +145,7 @@
},
{
"cell_type": "markdown",
"id": "transsexual-prison",
"id": "relative-material",
"metadata": {},
"source": [
"## Path of the different files (pre-defined python functions, sympy equations, sympy variables)"
......@@ -154,7 +154,7 @@
{
"cell_type": "code",
"execution_count": 2,
"id": "oriental-trail",
"id": "alpine-musical",
"metadata": {
"tags": [
"parameters"
......@@ -185,7 +185,7 @@
},
{
"cell_type": "markdown",
"id": "imported-domestic",
"id": "dedicated-bookmark",
"metadata": {},
"source": [
"## Importing the sympy variables and equations defined in the theory.ipynb notebook"
......@@ -194,7 +194,7 @@
{
"cell_type": "code",
"execution_count": 3,
"id": "czech-indianapolis",
"id": "growing-subject",
"metadata": {},
"outputs": [
{
......@@ -291,7 +291,7 @@
},
{
"cell_type": "markdown",
"id": "dominant-genealogy",
"id": "arranged-personal",
"metadata": {},
"source": [
"## Importing the performance assessment functions defined in the analysis_function.py file"
......@@ -300,7 +300,7 @@
{
"cell_type": "code",
"execution_count": 4,
"id": "distinguished-penny",
"id": "powerful-encounter",
"metadata": {},
"outputs": [
{
......@@ -350,7 +350,7 @@
},
{
"cell_type": "markdown",
"id": "identical-portuguese",
"id": "funky-tribute",
"metadata": {},
"source": [
"## Data import, preprocess and shape for the computations"
......@@ -358,7 +358,7 @@
},
{
"cell_type": "markdown",
"id": "fallen-juvenile",
"id": "disabled-month",
"metadata": {},
"source": [
"### Get the different files where data are stored\n",
......@@ -369,7 +369,7 @@
{
"cell_type": "code",
"execution_count": 5,
"id": "mediterranean-reading",
"id": "orange-quilt",
"metadata": {},
"outputs": [
{
......@@ -399,7 +399,7 @@
},
{
"cell_type": "markdown",
"id": "bacterial-storage",
"id": "owned-chosen",
"metadata": {},
"source": [
"### Define and test a function that process the fPAR data\n",
......@@ -409,7 +409,7 @@
{
"cell_type": "code",
"execution_count": 6,
"id": "following-patrick",
"id": "blind-worth",
"metadata": {},
"outputs": [],
"source": [
......@@ -448,7 +448,7 @@
{
"cell_type": "code",
"execution_count": 7,
"id": "serious-ocean",
"id": "swedish-burden",
"metadata": {},
"outputs": [
{
......@@ -574,7 +574,7 @@
},
{
"cell_type": "markdown",
"id": "powerful-degree",
"id": "familiar-shannon",
"metadata": {},
"source": [
"### fPARSet function\n",
......@@ -584,7 +584,7 @@
{
"cell_type": "code",
"execution_count": 8,
"id": "opposite-installation",
"id": "rotary-candy",
"metadata": {},
"outputs": [],
"source": [
......@@ -615,7 +615,7 @@
},
{
"cell_type": "markdown",
"id": "usual-malawi",
"id": "analyzed-festival",
"metadata": {},
"source": [
"### DataChose function\n",
......@@ -636,7 +636,7 @@
{
"cell_type": "code",
"execution_count": 9,
"id": "incident-fraction",
"id": "approved-belgium",
"metadata": {},
"outputs": [],
"source": [
......@@ -729,7 +729,7 @@
},
{
"cell_type": "markdown",
"id": "second-drink",
"id": "interested-cliff",
"metadata": {},
"source": [
"## Compile the different functions defined in the symbolic domain\n",
......@@ -738,7 +738,7 @@
},
{
"cell_type": "markdown",
"id": "assisted-complement",
"id": "governmental-spine",
"metadata": {},
"source": [
"### Water stress functions"
......@@ -747,7 +747,7 @@
{
"cell_type": "code",
"execution_count": 10,
"id": "ancient-party",
"id": "comprehensive-asset",
"metadata": {},
"outputs": [],
"source": [
......@@ -768,7 +768,7 @@
},
{
"cell_type": "markdown",
"id": "forward-gauge",
"id": "loving-sherman",
"metadata": {},
"source": [
"### Soil water potential"
......@@ -777,7 +777,7 @@
{
"cell_type": "code",
"execution_count": 11,
"id": "south-maker",
"id": "comic-barrel",
"metadata": {},
"outputs": [],
"source": [
......@@ -793,7 +793,7 @@
{
"cell_type": "code",
"execution_count": 12,
"id": "complex-minneapolis",
"id": "capital-processing",
"metadata": {},
"outputs": [],
"source": [
......@@ -810,7 +810,7 @@
},
{
"cell_type": "markdown",
"id": "brown-convertible",
"id": "lucky-adelaide",
"metadata": {},
"source": [
"### Penman-Monteith"
......@@ -819,7 +819,7 @@
{
"cell_type": "code",
"execution_count": 13,
"id": "recovered-diabetes",
"id": "funded-mount",
"metadata": {},
"outputs": [],
"source": [
......@@ -838,7 +838,7 @@
{
"cell_type": "code",
"execution_count": 14,
"id": "legendary-archives",
"id": "whole-velvet",
"metadata": {},
"outputs": [],
"source": [
......@@ -866,7 +866,7 @@
{
"cell_type": "code",
"execution_count": 15,
"id": "engaging-pontiac",
"id": "attempted-theme",
"metadata": {},
"outputs": [],
"source": [
......@@ -888,7 +888,7 @@
{
"cell_type": "code",
"execution_count": 16,
"id": "surrounded-budget",
"id": "metropolitan-iraqi",
"metadata": {},
"outputs": [],
"source": [
......@@ -910,7 +910,7 @@
{
"cell_type": "code",
"execution_count": 17,
"id": "entire-channel",
"id": "binding-oakland",
"metadata": {},
"outputs": [],
"source": [
......@@ -932,7 +932,7 @@
{
"cell_type": "code",
"execution_count": 18,
"id": "dependent-intersection",
"id": "fleet-saint",
"metadata": {},
"outputs": [],
"source": [
......@@ -960,7 +960,7 @@
{
"cell_type": "code",
"execution_count": 19,
"id": "declared-major",
"id": "breathing-gateway",
"metadata": {},
"outputs": [],
"source": [
......@@ -991,7 +991,7 @@
{
"cell_type": "code",
"execution_count": 20,
"id": "faced-atmosphere",
"id": "extra-celebration",
"metadata": {},
"outputs": [],
"source": [
......@@ -1020,7 +1020,7 @@
{
"cell_type": "code",
"execution_count": 21,
"id": "general-still",
"id": "outdoor-oliver",
"metadata": {},
"outputs": [],
"source": [
......@@ -1054,7 +1054,7 @@
{
"cell_type": "code",
"execution_count": 22,
"id": "composed-boundary",
"id": "advised-partner",
"metadata": {},
"outputs": [],
"source": [
......@@ -1077,7 +1077,7 @@
{
"cell_type": "code",
"execution_count": 23,
"id": "lined-puppy",
"id": "lesser-century",
"metadata": {},
"outputs": [],
"source": [
......@@ -1095,7 +1095,7 @@
},
{
"cell_type": "markdown",
"id": "outstanding-accident",
"id": "assisted-furniture",
"metadata": {},
"source": [
"### Assign the different compiled functions to variables functions (create the functions in python)"
......@@ -1104,7 +1104,7 @@
{
"cell_type": "code",
"execution_count": 24,
"id": "oriented-greensboro",
"id": "respected-ballot",
"metadata": {},
"outputs": [],
"source": [
......@@ -1132,7 +1132,7 @@
{
"cell_type": "code",
"execution_count": 25,
"id": "heard-terrorism",
"id": "dramatic-integral",
"metadata": {},
"outputs": [],
"source": [
......@@ -1161,7 +1161,7 @@
},
{
"cell_type": "markdown",
"id": "ancient-astronomy",
"id": "progressive-child",
"metadata": {},
"source": [
"## Functions to run the different models\n",
......@@ -1170,7 +1170,7 @@
},
{
"cell_type": "markdown",
"id": "infectious-brook",
"id": "imperial-midwest",
"metadata": {},
"source": [
"### Varying surface resistance model"
......@@ -1179,7 +1179,7 @@
{
"cell_type": "code",
"execution_count": 26,
"id": "drawn-sheriff",
"id": "visible-silicon",
"metadata": {},
"outputs": [],
"source": [
......@@ -1242,7 +1242,7 @@
},
{
"cell_type": "markdown",
"id": "continued-examination",
"id": "still-colonial",
"metadata": {},
"source": [
"### Constant surface conductance model"
......@@ -1251,7 +1251,7 @@
{
"cell_type": "code",
"execution_count": 27,
"id": "white-therapy",
"id": "macro-energy",
"metadata": {},
"outputs": [],
"source": [
......@@ -1315,7 +1315,7 @@
},
{
"cell_type": "markdown",
"id": "expensive-tract",
"id": "tight-comedy",
"metadata": {},
"source": [
"### Benchmark Penman-Monteith model"
......@@ -1324,7 +1324,7 @@
{
"cell_type": "code",
"execution_count": 28,
"id": "historical-vocabulary",
"id": "cubic-naples",
"metadata": {},
"outputs": [],
"source": [
......@@ -1384,7 +1384,7 @@
{
"cell_type": "code",
"execution_count": 29,
"id": "derived-regression",
"id": "attached-confidence",
"metadata": {},
"outputs": [],
"source": [
......@@ -1443,7 +1443,7 @@
},
{
"cell_type": "markdown",
"id": "scientific-vancouver",
"id": "worth-fossil",
"metadata": {},
"source": [
"### Modified version of the PM equation\n",
......@@ -1459,7 +1459,7 @@
{
"cell_type": "code",
"execution_count": 30,
"id": "handed-devices",
"id": "regulation-performance",
"metadata": {},
"outputs": [],
"source": [
......@@ -1523,7 +1523,7 @@
{
"cell_type": "code",
"execution_count": 31,
"id": "early-passion",
"id": "engaged-chick",
"metadata": {},
"outputs": [],
"source": [
......@@ -1587,7 +1587,7 @@
},
{
"cell_type": "markdown",
"id": "champion-criterion",
"id": "third-growth",
"metadata": {},
"source": [
"### Priestley and Taylor model"
......@@ -1596,7 +1596,7 @@
{
"cell_type": "code",
"execution_count": 32,
"id": "lyric-presentation",
"id": "conventional-spider",
"metadata": {},
"outputs": [],
"source": [
......@@ -1652,7 +1652,7 @@
{
"cell_type": "code",
"execution_count": 33,
"id": "identified-stock",
"id": "raised-theater",
"metadata": {},
"outputs": [],
"source": [
......@@ -1707,7 +1707,7 @@
},
{
"cell_type": "markdown",
"id": "fourth-suspension",
"id": "affiliated-amino",
"metadata": {},
"source": [
"### Inverse modelling\n",
......@@ -1717,7 +1717,7 @@
{
"cell_type": "code",
"execution_count": 34,
"id": "objective-nursery",
"id": "spare-height",
"metadata": {},
"outputs": [],
"source": [
......@@ -1771,7 +1771,7 @@
},
{
"cell_type": "markdown",
"id": "simple-consequence",
"id": "centered-writing",
"metadata": {},
"source": [
"## Calibration algorithm"
......@@ -1780,7 +1780,7 @@
{
"cell_type": "code",
"execution_count": 35,
"id": "aggregate-while",
"id": "modern-faith",
"metadata": {},
"outputs": [],
"source": [
......@@ -1802,7 +1802,7 @@
{
"cell_type": "code",
"execution_count": 36,
"id": "elementary-reply",
"id": "another-moisture",
"metadata": {
"jupyter": {
"source_hidden": true
......@@ -1937,7 +1937,7 @@
},
{
"cell_type": "markdown",
"id": "registered-newark",
"id": "vocal-renaissance",
"metadata": {},
"source": [
"Use the global optimizer from the `scipy.optimize` package. Minimize the squared residual :\n",
......@@ -1949,7 +1949,7 @@
{
"cell_type": "code",
"execution_count": 37,
"id": "indian-sequence",
"id": "wanted-tyler",
"metadata": {},
"outputs": [],
"source": [
......@@ -1968,7 +1968,7 @@
},
{
"cell_type": "markdown",
"id": "aggregate-penalty",
"id": "accepted-breath",
"metadata": {},
"source": [
"# Part III - Experiments"
......@@ -1976,7 +1976,7 @@
},
{
"cell_type": "markdown",
"id": "quarterly-works",
"id": "needed-denial",
"metadata": {},
"source": [
"## One site, one year\n",
......@@ -1986,7 +1986,7 @@
{
"cell_type": "code",
"execution_count": 38,
"id": "greater-scottish",
"id": "chicken-lyric",
"metadata": {},
"outputs": [
{
......@@ -10673,7 +10673,7 @@
{
"cell_type": "code",
"execution_count": 39,
"id": "collect-python",
"id": "greater-better",
"metadata": {},
"outputs": [],
"source": [
......@@ -10683,7 +10683,7 @@
},
{
"cell_type": "markdown",
"id": "smaller-shield",
"id": "developmental-posting",
"metadata": {},
"source": [
"### Calibrate all the models using the optimized function defined above"
......@@ -10692,7 +10692,7 @@
{
"cell_type": "code",
"execution_count": 40,
"id": "daily-singing",
"id": "electronic-bundle",
"metadata": {},
"outputs": [
{
......@@ -10714,7 +10714,7 @@
},
{
"cell_type": "markdown",
"id": "comparative-decimal",
"id": "intermediate-mobile",
"metadata": {},
"source": [
"### Compute the model results with the optimimum parameters"
......@@ -10723,7 +10723,7 @@
{
"cell_type": "code",
"execution_count": 41,
"id": "removable-spice",
"id": "great-biography",
"metadata": {},
"outputs": [],
"source": [
......@@ -10739,7 +10739,7 @@
},
{
"cell_type": "markdown",
"id": "organizational-european",
"id": "portable-andrews",
"metadata": {},
"source": [
"### Aggregate the results in a single matrix"
......@@ -10748,7 +10748,7 @@
{
"cell_type": "code",
"execution_count": 42,
"id": "loaded-fundamental",
"id": "assumed-finnish",
"metadata": {},
"outputs": [],
"source": [
......@@ -10791,7 +10791,7 @@
},
{
"cell_type": "markdown",
"id": "first-disorder",
"id": "distributed-accused",
"metadata": {},
"source": [
"### Plot the time serie"
......@@ -10800,7 +10800,7 @@
{
"cell_type": "code",
"execution_count": 43,
"id": "secret-surgeon",
"id": "republican-triple",
"metadata": {
"slideshow": {
"slide_type": "slide"
......@@ -10898,7 +10898,7 @@
},
{
"cell_type": "markdown",
"id": "periodic-minnesota",
"id": "guilty-bathroom",
"metadata": {},
"source": [
"### Compute the model performance \n",
......@@ -10908,7 +10908,7 @@
{
"cell_type": "code",
"execution_count": 44,
"id": "moderate-edgar",
"id": "representative-brighton",
"metadata": {},