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Commit 23ed59e1 authored by Oscar Corvi's avatar Oscar Corvi
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renku commands updated and ready to run

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Renku_commands.txt
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renku run papermill notebooks/theory/theory.ipynb notebooks/theory/theory.ran.ipynb -p output_path_variable notebooks/theory/pyFile_storage/theory_variable.py -p output_path_equation notebooks/theory/pyFile_storage/theory_equation.py
renku run papermill notebooks/scen1/naive_run/evaluation.ipynb notebooks/scen1/naive_run/evaluation.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p parameter_file notebooks/scen1/calibration/dry_season.txt -p inputfile data/howard_spring_l4/HowardSprings_L4.nc -p export_visual_scen1 graphs/scen1/visual_expl_dry.png -p output_path_scenario1_DataSet data/howard_spring_l4/scenario1_DataSet_dry.nc
renku run papermill notebooks/Finished_project/simpler_model/simpler_model.ipynb notebooks/Finished_project/simpler_model/simpler_model.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p timeSerie_oneSite_oneYear notebooks/Finished_project/simpler_model/timeSerie_oneSite_oneYear.png -p inverseModelling notebooks/Finished_project/simpler_model/inverseModelling.png -p Influence_atmo_E_dry notebooks/Finished_project/simpler_model/Influence_atmo_E_dry.png -p Influence_atmo_E_wet notebooks/Finished_project/simpler_model/Influence_atmo_E_wet.png -p Influence_atmo_rel_dry notebooks/Finished_project/simpler_model/Influence_atmo_rel_dry.png -p Influence_atmo_rel_dry_sturt notebooks/Finished_project/simpler_model/Influence_atmo_rel_dry_sturt.png -p Influence_atmo_rel_wet notebooks/Finished_project/simpler_model/Influence_atmo_rel_wet.png -p Influence_atmo_rel_compa notebooks/Finished_project/simpler_model/Influence_atmo_rel_compa.png -p sensitivity_parameters notebooks/Finished_project/simpler_model/sensitivity_parameters.png -p statistical_assessment notebooks/Finished_project/simpler_model/statistical_assessment.png -p different_sites notebooks/Finished_project/simpler_model/different_sites.png -p theta_CC notebooks/Finished_project/simpler_model/theta_CC.png -p theta_gs_relation notebooks/Finished_project/simpler_model/theta_gs_relation.png -p tex_file_whole notebooks/Finished_project/simpler_model/latex_files/whole_year.tex -p tex_file_dry notebooks/Finished_project/simpler_model/latex_files/dry_season.tex -p tex_file_wet notebooks/Finished_project/simpler_model/latex_files/wet_season.tex
renku run papermill notebooks/scen1/naive_run/evaluation.ipynb notebooks/scen1/naive_run/evaluation.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p parameter_file notebooks/scen1/calibration/wet_season.txt -p inputfile data/howard_spring_l4/HowardSprings_L4.nc -p export_visual_scen1 graphs/scen1/visual_expl_wet.png -p output_path_scenario1_DataSet data/howard_spring_l4/scenario1_DataSet_wet.nc
renku run papermill notebooks/Finished_project/meaning_stress_factor/meaning_stress_factor.ipynb notebooks/Finished_project/meaning_stress_factor/meaning_stress_factor.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p stress_factor_reconstruct notebooks/Finished_project/meaning_stress_factor/stress_factor_reconstruct.png -p constant_VS_fPAR notebooks/Finished_project/meaning_stress_factor/constant_VS_fPAR.png -p complete_VS_incomplete notebooks/Finished_project/meaning_stress_factor/complete_VS_incomplete.png -p theta_stress_fact_rel notebooks/Finished_project/meaning_stress_factor/theta_stress_fact_rel.png
renku run papermill notebooks/scen1/naive_run/analysis.ipynb notebooks/scen1/naive_run/analysis.ran.ipynb -p inputfile_sce1 data/howard_spring_l4/scenario1_DataSet_dry.nc -p export_sc1_mes_VS_model graphs/scen1/dry/mes_sc1_VS_model_dry.png -p export_sc1_month_invest graphs/scen1/dry/mes_sc1_month_invest_dry.png -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p export_sc1_hist_RMSE_NS graphs/scen1/dry/mes_sc1_hist_RMSE_NS_dry.png -p export_sc1_hist_month graphs/scen1/dry/mes_sc1_hist_month_dry.png
renku run papermill notebooks/scen1/naive_run/analysis.ipynb notebooks/scen1/naive_run/analysis.ran.ipynb -p inputfile_sce1 data/howard_spring_l4/scenario1_DataSet_wet.nc -p export_sc1_mes_VS_model graphs/scen1/wet/mes_sc1_VS_model_wet.png -p export_sc1_month_invest graphs/scen1/wet/mes_sc1_month_invest_wet.png -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p export_sc1_hist_RMSE_NS graphs/scen1/wet/mes_sc1_hist_RMSE_NS_wet.png -p export_sc1_hist_month graphs/scen1/wet/mes_sc1_hist_month_wet.png
renku run papermill notebooks/scen1/calibration/calibration.ipynb notebooks/scen1/calibration/calibration.ran.ipynb -p path_variable 'notebooks/theory/pyFile_storage/theory_variable.py' -p path_equation 'notebooks/theory/pyFile_storage/theory_equation.py' -p path_analysis_functions 'notebooks/theory/pyFile_storage/analysis_functions.py' -p inputfile 'data/howard_spring_l4/HowardSprings_L4.nc' -p wet_name "notebooks/scen1/calibration/wet_season.txt" -p dry_name "notebooks/scen1/calibration/dry_season.txt" -p graph_perf "graphs/scen1/calibration_perf.png" -p graph_cube "graphs/scen1/calibration_cube.png"
renku run papermill notebooks/scen2/model_run/evaluation_PM.ipynb notebooks/scen2/model_run/evaluation_PM.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p inputfile data/howard_spring_l4/HowardSprings_L4.nc -p path_graph graphs/scen2/ -p name_graph Penman_invest_rs -p output_path_scenario2_DataSet data/howard_spring_l4/ -p output_name_scenario2_DataSet scenario2_Dataset.nc -p flag_time_sel False -p Period_time_sel 2019-01 -p aggregate_flag False
renku run papermill notebooks/scen2/model_run/evaluation_PM.ipynb notebooks/scen2/model_run/evaluation_PM.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p inputfile data/howard_spring_l4/HowardSprings_L4.nc -p path_graph graphs/scen2/ -p name_graph Penman_invest_rs -p output_path_scenario2_DataSet data/howard_spring_l4/ -p output_name_scenario2_DataSet scenario2_Dataset.nc -p flag_time_sel False -p Period_time_sel 2019-01 -p aggregate_flag True
renku run papermill notebooks/scen2/model_run/analysis_PM.ipynb notebooks/scen2/model_run/analysis_PM.ran.ipynb -p inputfile_sce2 data/howard_spring_l4/scenario2_Dataset.nc -p export_sc2_mes_VS_model graphs/scen2/mes_sc2_VS_model.png -p export_sc2_month_invest graphs/scen2/mes_sc2_month_invest.png -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p export_sc2_hist_RMSE_NS graphs/scen2/mes_sc2_hist_RMSE_NS.png -p export_sc2_hist_month graphs/scen2/mes_sc2_hist_month.png
renku run papermill notebooks/Finished_project/location_stress_factor/location_stress_factor.ipynb notebooks/Finished_project/location_stress_factor/location_stress_factor.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p timeSerie_oneSite_oneYear notebooks/Finished_project/location_stress_factor/timeSerie_oneSite_oneYear.png -p inverseModelling notebooks/Finished_project/location_stress_factor/inverseModelling.png -p Influence_atmo_E_dry notebooks/Finished_project/location_stress_factor/Influence_atmo_E_dry.png -p Influence_atmo_E_wet notebooks/Finished_project/location_stress_factor/Influence_atmo_E_wet.png -p Influence_atmo_rel_dry notebooks/Finished_project/location_stress_factor/Influence_atmo_rel_dry.png -p Influence_atmo_rel_wet notebooks/Finished_project/location_stress_factor/Influence_atmo_rel_wet.png -p sensitivity_parameters notebooks/Finished_project/location_stress_factor/sensitivity_parameters.png -p statistical_assessment notebooks/Finished_project/location_stress_factor/statistical_assessment.png -p different_sites notebooks/Finished_project/location_stress_factor/different_sites.png
renku run papermill notebooks/Finished_project/meaning_stress_factor/meaning_stress_factor.ipynb notebooks/Finished_project/meaning_stress_factor/meaning_stress_factor.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p stress_factor_reconstruct notebooks/Finished_project/meaning_stress_factor/stress_factor_reconstruct.png -p constant_VS_fPAR notebooks/Finished_project/meaning_stress_factor/constant_VS_fPAR.png -p complete_VS_incomplete notebooks/Finished_project/meaning_stress_factor/complete_VS_incomplete.png
renku run papermill notebooks/Finished_project/simpler_model/simpler_model.ipynb notebooks/Finished_project/simpler_model/simpler_model.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p timeSerie_oneSite_oneYear notebooks/Finished_project/simpler_model/timeSerie_oneSite_oneYear.png -p inverseModelling notebooks/Finished_project/simpler_model/inverseModelling.png -p Influence_atmo_E_dry notebooks/Finished_project/simpler_model/Influence_atmo_E_dry.png -p Influence_atmo_E_wet notebooks/Finished_project/simpler_model/Influence_atmo_E_wet.png -p Influence_atmo_rel_dry notebooks/Finished_project/simpler_model/Influence_atmo_rel_dry.png -p Influence_atmo_rel_wet notebooks/Finished_project/simpler_model/Influence_atmo_rel_wet.png -p sensitivity_parameters notebooks/Finished_project/simpler_model/sensitivity_parameters.png -p statistical_assessment notebooks/Finished_project/simpler_model/statistical_assessment.png -p different_sites notebooks/Finished_project/simpler_model/different_sites.png -p tex_file_whole notebooks/Finished_project/simpler_model/latex_files/whole_year.tex -p tex_file_dry notebooks/Finished_project/simpler_model/latex_files/dry_season.tex -p tex_file_wet notebooks/Finished_project/simpler_model/latex_files/wet_season.tex
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renku run papermill notebooks/Finished_project/stress_factor_shape/stress_factor_shape.ipynb notebooks/Finished_project/stress_factor_shape/stress_factor_shape.ran.ipynb -p path_variable notebooks/theory/pyFile_storage/theory_variable.py -p path_equation notebooks/theory/pyFile_storage/theory_equation.py -p path_analysis_functions notebooks/theory/pyFile_storage/analysis_functions.py -p path_data data/eddycovdata/ -p dates_fPAR data/fpar_howard_spring/dates_v5 -p stress_fact notebooks/Finished_project/stress_factor_shape/stress_fact.png -p sensitivity_parameters notebooks/Finished_project/stress_factor_shape/sensitivity_parameters.png
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