Auto-saving for jeffrey.post on branch master from commit a5bc2520

Dockerfile

@@ -9,12 +9,14 @@ FROM renku/renkulab-r:4.0.0-renku0.10.4-0.6.3
 # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
 # except for the last end with backslash '\' to continue the RUN line
 #
-# USER root
-# RUN apt-get update && \
-#    apt-get install -y --no-install-recommends \
+USER root
+RUN apt-get update && \
+    /opt/conda/bin/python3 -m pip install --upgrade pip && \
+    apt-get install -y --no-install-recommends \
+    conda update --all -y
 #    apt-utils \
 #    vim
-# USER ${NB_USER}
+USER ${NB_USER}
 
 # install the R dependencies
 COPY install.R /tmp/
@@ -22,4 +24,10 @@ RUN R -f /tmp/install.R
 
 # install the python dependencies
 COPY requirements.txt /tmp/
+COPY environment.yml /tmp/
 RUN pip3 install -r /tmp/requirements.txt
+RUN conda env update -n base --file /tmp/environment.yml
+
+USER root
+RUN conda update --all -y
+USER ${NB_USER}