adv_scrnaseq_2020:master commits
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commits/master
2020-05-27T09:05:06+00:00
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/1a6682bae4e502a3dca236808d78b9b33a7d50b0
add github repro with slides
2020-05-27T09:05:06+00:00
Mike Smith
grimbough@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/e52b1a72fa3a8df1a9c46f963a2effdf22bdf8e3
service: dataset add dgn MG_leavout_wallp_VAE_weights.hdf5...
2020-05-26T22:38:53+00:00
Panagiotis Papasaikas
panp80@gmail.com
service: dataset add dgn MG_leavout_wallp_VAE_weights.hdf5 MG_complete_VAE_weights.hdf5 distinct_palettes.rds MG_complete_VAE_history.rds SCE_MammaryGland.rds
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/f44e819a6ff7c0757f0c598bcd76ae72d8649e71
renku dataset: committing 5 newly added files
2020-05-26T22:38:53+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/21a55b921bdb6eefb076135f723a20a282fc5b9e
service: dataset create dgn
2020-05-26T22:38:50+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/2351ca1c0bc4c3c2d2c1419ac45a1fa1720e6d29
Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020
2020-05-26T19:39:24+02:00
Mike Smith
grimbough@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/8b49308756ee0650dae1b17a4e69469a3332d3db
added more hdf5 files
2020-05-26T18:57:16+02:00
Mike Smith
grimbough@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/4ea5d897edfcab06a54f16e52f2620ba4ecbc6f6
pull lfs data by default
2020-05-26T18:45:59+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/633680e738a81b3d77348107e2afac665e30a8c7
redirect R output
2020-05-26T17:16:34+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/d9fdeee7ccc554474a15689ccbf89a5bc0f4f81d
add project tag to ensure cache availability
2020-05-26T17:13:23+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/ea15e45098bd568949aed7094eef045fc33694b4
add Mike's requirements
2020-05-26T10:24:36+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/5bc139b1ccfea3c255e7fcddc0824d907d0246f3
Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020
2020-05-25T18:05:52+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/6383fa07e731a5fcbedada5044659e5d4a2fbe7d
add org.Hs.eg.db
2020-05-25T18:05:09+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/539967d0bd4532fb7a0ea2c91dc6a99b1695024b
delete file in wrong place
2020-05-25T17:27:55+02:00
Mike Smith
grimbough@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/d633c3e147bbebf66fc541bfd2ae12542f1b2638
adding h5 file via gitlab
2020-05-25T17:20:49+02:00
Mike Smith
grimbough@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/fb0b39032a79797c5a6e78366beaad332d7abbe8
Merge branch 'master' of https://renkulab.io/gitlab/stadler.michael/adv_scrna...
2020-05-25T08:55:41+00:00
Charlotte Soneson
charlottesoneson@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/244638fc3adee13d61d7bb472ff547b7e45f41eb
renku dataset add spermatogenesis_subset...
2020-05-25T08:54:39+00:00
Charlotte Soneson
charlottesoneson@gmail.com
renku dataset add spermatogenesis_subset data/spermatogenesis_subset/GRCm38.gencode.vM21.chr18.chr19.tgMap.txt
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/4225490970e940ab7342ce1cf355e6c24b9aef60
renku dataset: committing 1 newly added files
2020-05-25T08:54:38+00:00
Charlotte Soneson
charlottesoneson@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/ef90b99903416b32c5f49529f5ff43e09b8c5dc8
use tensorflow 2.1.0
2020-05-25T10:42:12+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/73506c4c839620aaa25bbc47c12287e697474c7c
Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020
2020-05-25T10:34:39+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/941f185137b5866bd0533c3056a33cc1da63a35e
use tensorflow 2.1.1
2020-05-25T10:34:24+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/0b2fd3a46c0b8f513bd57f52b7f489858419446f
Add tgMap
2020-05-25T10:24:31+02:00
Charlotte Soneson
charlottesoneson@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/edd19d3c08c826ab5f10eac1a1d6288d157b7fc5
remove obsolete data///\\
2020-05-25T08:11:36+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/99527bb5f0e488e3c7aa8f76754ad74b755bea65
renku dataset rm mammary_gland
2020-05-25T08:08:04+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/9b8b4a7b17a36bb8b19d333d45fe854ecd3e480b
Delete .gitkeep
2020-05-24T23:14:21+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/3cc060ad29a309101b9e6e6a45c157ad5642b374
service: dataset add mammary_gland SCE_TabulaMuris_filteredgenes_annotated.rds
2020-05-22T14:17:54+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/2097458030559fcb061567346ef22336ac514949
renku dataset: committing 1 newly added files
2020-05-22T14:17:54+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/ac72e3349f0e8c058b3af928921a31cb3fbff065
service: dataset create mammary_gland
2020-05-22T14:17:50+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/8361ab32e66d77c2fbc1a0fa9787792e4b8c85ad
New directory for the DGNs section
2020-05-22T13:34:53+00:00
Panagiotis Papasaikas
panp80@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/7313664ee4b4c1e9dbcdd8e82477ff85a4893b33
remove version requirements
2020-05-21T14:07:56+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/04142dd9251c40f7c1be740b6ec8467f695b5881
remove quotes
2020-05-21T12:32:36+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/210e43737666c947a54ef71d5bf300b3041a6b68
Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020
2020-05-21T12:29:04+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/52ffb43070747927598573eccaefecaecd0347c0
add Alma's requirements
2020-05-21T12:28:29+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/53d21a1d43c0a63fce1c173f564912989f9c54c9
Update data/spatial-transcriptomics/mouse-brain/curated/mouse-brain.h5ad.gz,...
2020-05-20T17:58:48+00:00
Alma Andersson
almaan@kth.se
Update data/spatial-transcriptomics/mouse-brain/curated/mouse-brain.h5ad.gz, data/spatial-transcriptomics/lazy/lda.pickle, data/spatial-transcriptomics/lazy/prop/prop-bc-A1.tsv, data/spatial-transcriptomics/lazy/prop/prop-bc-A2.tsv files
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/84a204d3846f9d28deab60405837da0090b7f374
Deleted data/spatial-transcriptomics/bc/raw/A1/spatial/aligned_fiducials.jpg,...
2020-05-20T17:54:17+00:00
Alma Andersson
almaan@kth.se
Deleted data/spatial-transcriptomics/bc/raw/A1/spatial/aligned_fiducials.jpg, data/spatial-transcriptomics/bc/raw/A1/spatial/detected_tissue_image.jpg, data/spatial-transcriptomics/bc/raw/A1/spatial/scalefactors_json.json, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_hires_image.png, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_lowres_image.png, data/spatial-transcriptomics/bc/raw/A1/spatial/tissue_positions_list.csv, data/spatial-transcriptomics/bc/raw/A1/V1_Breast_Cancer_Block_A_Section_1_filtered_feature_bc_matrix.h5, data/spatial-transcriptomics/bc/raw/A2/spatial/aligned_fiducials.jpg, data/spatial-transcriptomics/bc/raw/A2/spatial/detected_tissue_image.jpg, data/spatial-transcriptomics/bc/raw/A2/spatial/scalefactors_json.json, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_hires_image.png, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_lowres_image.png, data/spatial-transcriptomics/bc/raw/A2/spatial/tissue_positions_list.csv, data/spatial-transcriptomics/bc/raw/A2/V1_Breast_Cancer_Block_A_Section_2_filtered_feature_bc_matrix.h5, data/spatial-transcriptomics/bc/curated/bc_A1.h5ad.gz, data/spatial-transcriptomics/bc/curated/bc_A2.h5ad.gz files
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/02c1fb101b37833f0b15b0862a0beae51f635b7d
service: dataset add spatial-transcriptomics bc
2020-05-20T17:39:00+00:00
Alma Andersson
almaan@kth.se
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/e937cd4c3329cf78ae843b33fcf66eaec6fd0ee2
renku dataset: committing 18 newly added files
2020-05-20T17:38:59+00:00
Alma Andersson
almaan@kth.se
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/efbd343e5b1f821f8e7ed153f33f0dc519dabd5a
service: dataset create spatial-transcriptomics
2020-05-20T17:38:52+00:00
Alma Andersson
almaan@kth.se
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/2ff44140876ebb545372e192e85caf251cc6f22d
service: dataset create spatial
2020-05-20T17:07:46+00:00
Alma Andersson
almaan@kth.se
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/73ed4138f6258b144c3aacc9c9c7716d3cfd072f
add Pan's requirements
2020-05-20T13:53:47+02:00
mbstadler
stadler.michael@gmail.com
https://gitlab.renkulab.io/grimbough/adv_scrnaseq_2020/-/commit/1aae39d3fb17e59bef216f7aa680282851819655
add sinfo python package
2020-05-19T13:49:29+02:00
mbstadler
stadler.michael@gmail.com