Auto-saving for gitanjali.thakur on branch HEAD from commit ab172b32

Dockerfile

-FROM renku/renkulab:renku0.10.2-py3.7-0.6.1
+FROM renku/renkulab-py:3.7-renku0.10.3-0.6.2
 
 # Uncomment and adapt if code is to be included in the image
 # COPY src /code/src
@@ -7,12 +7,21 @@ FROM renku/renkulab:renku0.10.2-py3.7-0.6.1
 # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
 # except for the last end with backslash '\' to continue the RUN line
 #
-# USER root
+USER root
+
+RUN apt-get update &&\
+    #apt-get install -y proj-bin libgdal-dev libproj-dev gdal-bin python3-gdal python3-dev python-dev
+    apt-get install -y binutils libproj-dev gdal-bin
+ENV CPLUS_INCLUDE_PATH=/usr/include/gdal/
+ENV C_INCLUDE_PATH=/usr/include/gdal/
+
 # RUN apt-get update && \
 #    apt-get install -y --no-install-recommends \
 #    apt-utils \
 #    vim
-# USER ${NB_USER}
+USER ${NB_USER}
+
+
 
 # install the python dependencies
 COPY requirements.txt environment.yml /tmp/
@@ -20,3 +29,5 @@ RUN conda env update -q -f /tmp/environment.yml && \
     /opt/conda/bin/pip install -r /tmp/requirements.txt && \
     conda clean -y --all && \
     conda env export -n "root"
+
+    

installation_file.ipynb

+%% Cell type:code id: tags:
+
+``` python
+pip install -r requirements.txt
+```
+
+%%%% Output: stream
+
+    Collecting numpy
+      Using cached numpy-1.18.4-cp37-cp37m-manylinux1_x86_64.whl (20.2 MB)
+    Collecting pandas
+      Using cached pandas-1.0.3-cp37-cp37m-manylinux1_x86_64.whl (10.0 MB)
+    Collecting pytz>=2017.2
+      Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB)
+         |████████████████████████████████| 510 kB 2.9 MB/s eta 0:00:01
+    [?25hRequirement already satisfied: python-dateutil>=2.6.1 in /opt/conda/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 2)) (2.8.1)
+    Requirement already satisfied: six>=1.5 in /opt/conda/lib/python3.7/site-packages (from python-dateutil>=2.6.1->pandas->-r requirements.txt (line 2)) (1.14.0)
+    Installing collected packages: numpy, pytz, pandas
+    Successfully installed numpy-1.18.4 pandas-1.0.3 pytz-2020.1
+    Note: you may need to restart the kernel to use updated packages.
+
+%% Cell type:code id: tags:
+
+``` python
+import gdal
+```
+
+%%%% Output: error
+
+    ---------------------------------------------------------------------------
+    ModuleNotFoundError                       Traceback (most recent call last)
+    <ipython-input-9-ee38efafc30b> in <module>
+    ----> 1 import gdal
+
+    ModuleNotFoundError: No module named 'gdal'
+
+%% Cell type:code id: tags:
+
+``` python
+```

notebooks/Untitled.ipynb

+%% Cell type:code id: tags:
+
+``` python
+pip install -r requirements.txt
+```
+
+%%%% Output: stream
+
+    ERROR: Could not open requirements file: [Errno 2] No such file or directory: 'requirements.txt'
+    Note: you may need to restart the kernel to use updated packages.
+
+%% Cell type:code id: tags:
+
+``` python
+```

requirements.txt

+numpy 
+pandas
+gdal==2.2.3
+GDAL==2.2.3