Dockerfile

FROM renku/renkulab:renku0.10.3-py3.7-0.6.2
# Uncomment and adapt if code is to be included in the image
# COPY src /code/src

# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
# except for the last end with backslash '\' to continue the RUN line
#
USER root

RUN apt-get update &&\
    apt-get install -y proj-bin libgdal-dev libproj-dev gdal-bin python3-gdal python3-dev python-dev
ENV CPLUS_INCLUDE_PATH=/usr/include/gdal/
ENV C_INCLUDE_PATH=/usr/include/gdal/

# RUN apt-get update && \
#    apt-get install -y --no-install-recommends \
#    apt-utils \
#    vim
USER ${NB_USER}



# install the python dependencies
COPY requirements.txt environment.yml /tmp/
RUN conda env update -q -f /tmp/environment.yml && \
    /opt/conda/bin/pip install -r /tmp/requirements.txt && \
    conda clean -y --all && \
    conda env export -n "root"