Commit 09cb573f authored by Geert van Geest's avatar Geert van Geest
Browse files

Update environment.yml

parent 7e4774c5
Pipeline #278219 passed with stage
in 10 minutes and 34 seconds
......@@ -3,227 +3,14 @@ channels:
- bioconda
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- alembic=1.5.7=pyhd8ed1ab_0
- anyio=2.2.0=py38h578d9bd_0
- argon2-cffi=20.1.0=py38h497a2fe_2
- async_generator=1.10=py_0
- attrs=20.3.0=pyhd3deb0d_0
- babel=2.9.0=pyhd3deb0d_0
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.1=py_0
- bleach=3.3.0=pyh44b312d_0
- blinker=1.4=py_1
- bowtie2=2.4.2=py38hc2f83ea_2
- brotlipy=0.7.0=py38h497a2fe_1001
- bwa=0.7.17=h5bf99c6_8
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2020.12.5=ha878542_0
- certifi=2020.12.5=py38h578d9bd_1
- certipy=0.1.3=py_0
- cffi=1.14.5=py38ha65f79e_0
- chardet=4.0.0=py38h578d9bd_1
- conda=4.9.2=py38h578d9bd_0
- conda-package-handling=1.7.2=py38h8df0ef7_0
- configurable-http-proxy=4.3.1=node15_he6ea98c_0
- cryptography=3.4.6=py38ha5dfef3_0
- curl=7.76.1=h979ede3_1
- cutadapt=3.4=py38h4a8c8d9_1
- decorator=4.4.2=py_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- dnaio=0.5.1=py38h4a8c8d9_0
- entrez-direct=13.9=pl5262he881be0_2
- entrypoints=0.3=pyhd8ed1ab_1003
- expat=2.3.0=h9c3ff4c_0
- fastqc=0.11.8=2
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- freetype=2.10.4=h0708190_1
- greenlet=1.0.0=py38h709712a_0
- hdf5=1.10.6=nompi_h6a2412b_1114
- hisat2=2.2.1=h1b792b2_3
- htslib=1.12=h9093b5e_1
- icu=68.1=h58526e2_0
- idna=2.10=pyh9f0ad1d_0
- importlib-metadata=3.7.3=py38h578d9bd_0
- ipykernel=5.5.0=py38h81c977d_1
- ipython=7.21.0=py38h81c977d_0
- ipython_genutils=0.2.0=py_1
- isa-l=2.30.0=ha770c72_4
- jedi=0.18.0=py38h578d9bd_2
- jinja2=2.11.3=pyh44b312d_0
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter-packaging=0.7.12=pyhd8ed1ab_0
- jupyter_client=6.1.12=pyhd8ed1ab_0
- jupyter_core=4.7.1=py38h578d9bd_0
- jupyter_server=1.4.1=py38h578d9bd_0
- jupyter_telemetry=0.1.0=pyhd8ed1ab_1
- jupyterhub=1.3.0=py38h578d9bd_1
- jupyterhub-base=1.3.0=py38h578d9bd_1
- jupyterlab=3.0.11=pyhd8ed1ab_0
- jupyterlab_pygments=0.1.2=pyh9f0ad1d_0
- jupyterlab_server=2.3.0=pyhd8ed1ab_0
- krb5=1.17.2=h926e7f8_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libarchive=3.5.1=h3f442fb_1
- libcurl=7.76.1=hc4aaa36_1
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h2828fa1_18
- libgfortran-ng=9.3.0=hff62375_19
- libgfortran5=9.3.0=hff62375_19
- libgomp=9.3.0=h2828fa1_18
- libiconv=1.16=h516909a_0
- libnghttp2=1.43.0=h812cca2_0
- libpng=1.6.37=h21135ba_2
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.17=h780b84a_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_18
- libuuid=2.32.1=h7f98852_1000
- libuv=1.41.0=h7f98852_0
- libxml2=2.9.10=h72842e0_3
- lz4-c=1.9.3=h9c3ff4c_0
- lzo=2.10=h516909a_1000
- mako=1.1.4=pyh44b312d_0
- mamba=0.8.2=py38h2aa5da1_0
- markupsafe=1.1.1=py38h497a2fe_3
- mistune=0.8.4=py38h497a2fe_1003
- nbclassic=0.2.6=pyhd8ed1ab_0
- nbclient=0.5.3=pyhd8ed1ab_0
- nbconvert=6.0.7=py38h578d9bd_3
- nbformat=5.1.2=pyhd8ed1ab_1
- ncbi-ngs-sdk=2.11.0=hff44eed_0
- ncurses=6.2=h58526e2_4
- nest-asyncio=1.4.3=pyhd8ed1ab_0
- nodejs=15.11.0=h92b4a50_0
- notebook=6.2.0=py38h578d9bd_0
- oauthlib=3.0.1=py_0
- openjdk=10.0.2=h14c3975_1015
- openssl=1.1.1k=h7f98852_0
- ossuuid=1.6.2=hf484d3e_1000
- packaging=20.9=pyh44b312d_0
- pamela=1.0.0=py_0
- pandoc=2.12=h7f98852_0
- pandocfilters=1.4.2=py_1
- parso=0.8.1=pyhd8ed1ab_0
- perl=5.26.2=h36c2ea0_1008
- perl-app-cpanminus=1.7044=pl526_1
- perl-base=2.23=pl526_1
- perl-business-isbn=3.004=pl526_0
- perl-business-isbn-data=20140910.003=pl526_0
- perl-carp=1.38=pl526_3
- perl-compress-raw-zlib=2.087=pl526hc9558a2_0
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-digest-hmac=1.03=pl526_3
- perl-digest-md5=2.55=pl526_0
- perl-encode=2.88=pl526_1
- perl-encode-locale=1.05=pl526_6
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-listing=6.04=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-temp=0.2304=pl526_2
- perl-html-parser=3.72=pl526h6bb024c_5
- perl-html-tagset=3.20=pl526_3
- perl-html-tree=5.07=pl526_1
- perl-http-cookies=6.04=pl526_0
- perl-http-daemon=6.01=pl526_1
- perl-http-date=6.02=pl526_3
- perl-http-message=6.18=pl526_0
- perl-http-negotiate=6.01=pl526_3
- perl-io-html=1.001=pl526_2
- perl-io-socket-ssl=2.066=pl526_0
- perl-libwww-perl=6.39=pl526_0
- perl-lwp-mediatypes=6.04=pl526_0
- perl-lwp-protocol-https=6.07=pl526_4
- perl-mime-base64=3.15=pl526_1
- perl-mozilla-ca=20180117=pl526_1
- perl-net-http=6.19=pl526_0
- perl-net-ssleay=1.88=pl526h90d6eec_0
- perl-ntlm=1.09=pl526_4
- perl-parent=0.236=pl526_1
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-test-requiresinternet=0.05=pl526_0
- perl-threaded=5.26.0=0
- perl-time-local=1.28=pl526_1
- perl-try-tiny=0.30=pl526_1
- perl-uri=1.76=pl526_0
- perl-www-robotrules=6.02=pl526_3
- perl-xml-libxml=2.0132=pl526h7ec2d77_1
- perl-xml-namespacesupport=1.12=pl526_0
- perl-xml-parser=2.44=4
- perl-xml-sax=1.02=pl526_0
- perl-xml-sax-base=1.09=pl526_0
- perl-xml-sax-expat=0.51=pl526_3
- perl-xml-simple=2.25=pl526_1
- perl-xsloader=0.24=pl526_0
- pexpect=4.8.0=pyh9f0ad1d_2
- pickleshare=0.7.5=py_1003
- pigz=2.6=h27826a3_0
- pip=21.0.1=pyhd8ed1ab_0
- prometheus_client=0.9.0=pyhd3deb0d_0
- prompt-toolkit=3.0.17=pyha770c72_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pycosat=0.6.3=py38h497a2fe_1006
- pycparser=2.20=pyh9f0ad1d_2
- pycurl=7.43.0.6=py38h996a351_1
- pygments=2.8.1=pyhd8ed1ab_0
- pyjwt=2.0.1=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py38h497a2fe_2
- pysocks=1.7.1=py38h578d9bd_3
- python=3.8.8=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python-editor=1.0.4=py_0
- python-isal=0.10.0=py38h497a2fe_0
- python-json-logger=2.0.1=pyh9f0ad1d_0
- python_abi=3.8=1_cp38
- pytz=2021.1=pyhd8ed1ab_0
- pyzmq=22.0.3=py38h2035c66_1
- readline=8.0=he28a2e2_2
- reproc=14.2.1=h36c2ea0_0
- reproc-cpp=14.2.1=h58526e2_0
- requests=2.25.1=pyhd3deb0d_0
- ruamel.yaml=0.16.12=py38h497a2fe_2
- ruamel.yaml.clib=0.2.2=py38h497a2fe_2
- ruamel_yaml=0.15.80=py38h497a2fe_1004
- samtools=1.12=h9aed4be_1
- send2trash=1.5.0=py_0
- setuptools=49.6.0=py38h578d9bd_3
- six=1.15.0=pyh9f0ad1d_0
- sniffio=1.2.0=py38h578d9bd_1
- sqlalchemy=1.4.0=py38h497a2fe_1
- sqlite=3.34.0=h74cdb3f_0
- sra-tools=2.11.0=pl5262h314213e_0
- subread=2.0.1=h5bf99c6_1
- tbb=2020.2=h4bd325d_4
- terminado=0.9.2=py38h578d9bd_0
- testpath=0.4.4=py_0
- tini=0.18.0=h14c3975_1001
- tk=8.6.10=h21135ba_1
- tornado=6.1=py38h497a2fe_1
- tqdm=4.59.0=pyhd8ed1ab_0
- traitlets=5.0.5=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- webencodings=0.5.1=py_1
- wheel=0.36.2=pyhd3deb0d_0
- xopen=1.1.0=py38h578d9bd_2
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- zeromq=4.3.4=h9c3ff4c_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- samtools
- bwa
- fastqc
- sra-tools
- cutadapt
- bowtie2
- hisat2
- subread
- entrez-direct
- minimap2
prefix: /opt/conda
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