GitLab

Combine public data sources together into one project.

EPFL-SV Caenorhabditis elegans (WBcel235), cco-1 RNAi, his-3 RNAi, Empty Vector

EPFL-SV differential expression analysis of Caenorhabditis elegans (WBcel235), cco-1 RNAi, his-3 RNAi, Empty Vector

Analysis environment for the SIB course "Advanced topics in single-cell transcriptomics" (https://www.sib.swiss/training/course/2020-05-adv-scrna)

Template project to join s2s-ai-challenge

Website: https://s2s-ai-challenge.github.io/

Overview: https://renkulab.io/gitlab/aaron.spring/s2s-ai-challenge/-/wikis/Flow-of-information:-Where-do-I-find-what%3F

In this repo we collect all the functions for the preprocessing of the raw Democrasci data, i.e., the data from the Swiss parliament archives. The functions implemented here go from the opening and manipulation of these files, to the cleaning, curation, aggregation, and visualization, for all the different preprocessing steps. The final output files, one for each year, are the inputs for the functions in the repository corresponding to WP2.

A repo to playing with dynamic LDA on the data.

Tutorial to test the first steps

Moved to https://health.renkulab.datascience.ch/projects/renkovid/covid-19-forecast

An investigation into weather trends in Zürich, Switzerland.

tutorial-zhbikes

EPFL-SV STAR genome index generation for Caenorhabditis elegans reference genome sequence (WBcel235)

Defining ontologies.

Attempting to automatically classify INTEGRAL GRBs

Introduction to COVID-19 data manipulation and analysis. Notebooks for the data journalism workshop (14.10.2020)

Data Platform based on the COVID-19 data model used by the Our World in data project.