renku run ./code/cmd.sh --runThreadN 14 --genomeDir...

renku run ./code/cmd.sh --runThreadN 14 --genomeDir ./data/genome/celegans-genome/ --readFilesCommand zcat --outSAMtype BAM SortedByCoordinate --readFilesIn ./data/fastq/CCO3_L1_R1_001_4FUJJpxSolRO.fastq.gz ./data/fastq/CCO3_L1_R1_002_SCWplqJdeilE.fastq.gz ./data/fastq/CCO3_L1_R1_003_oUHoSAID4wz1.fastq.gz --outFileNamePrefix ./data/mapped/CCO3