renku run ./code/cmd.sh --runThreadN 14 --genomeDir...

renku run ./code/cmd.sh --runThreadN 14 --genomeDir ./data/genome/celegans-genome/ --readFilesCommand zcat --outSAMtype BAM SortedByCoordinate --readFilesIn ./data/fastq/CCO2_L1_R1_001_4XbZOyHUhHGi.fastq.gz ./data/fastq/CCO2_L1_R1_002_oQtPwZmwoob8.fastq.gz ./data/fastq/CCO2_L1_R1_003_kdzoXvrCF5uU.fastq.gz --outFileNamePrefix ./data/mapped/CCO2