renku run ./code/cmd.sh --runThreadN 14 --genomeDir...

renku run ./code/cmd.sh --runThreadN 14 --genomeDir ./data/genome/celegans-genome/ --readFilesCommand zcat --outSAMtype BAM SortedByCoordinate --readFilesIn ./data/fastq/CCO1_L1_R1_001_NVyMwfiCHYbh.fastq.gz ./data/fastq/CCO1_L1_R1_002_6NXgFqelHo0F.fastq.gz ./data/fastq/CCO1_L1_R1_003_C6yjwgTZU6Sy.fastq.gz --outFileNamePrefix ./data/mapped/CCO1