From 8a382c565dc1f7e86d27c4d4843efb305fca5f32 Mon Sep 17 00:00:00 2001 From: Mark Robinson Date: Fri, 1 May 2020 18:11:17 +0000 Subject: [PATCH] Update install.R --- install.R | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/install.R b/install.R index d45f031..d359558 100644 --- a/install.R +++ b/install.R @@ -1,11 +1,10 @@ install.packages("BiocManager") -BiocManager::install("edgeR") -#BiocManager::install(c("BSgenome.Hsapiens.UCSC.hg38","Biostrings","BiocStyle","ComplexHeatmap", -# "GenomicRanges","MultiAssayExperiment","RColorBrewer","Seurat", -# "ShortRead","SingleCellExperiment","SummarizedExperiment","airway", -# "cowplot","dplyr","edgeR","ggplot2","knitr","limma","readr", -# "CATALYST","diffcyt","scran", -# "rtracklayer","stringr","tibble","tidyr","magrittr"), version="3.11", quiet=TRUE) +BiocManager::install(c("BSgenome.Hsapiens.UCSC.hg38","Biostrings","BiocStyle","ComplexHeatmap", + "GenomicRanges","MultiAssayExperiment","RColorBrewer","Seurat", + "ShortRead","SingleCellExperiment","SummarizedExperiment","airway", + "cowplot","dplyr","edgeR","ggplot2","knitr","limma","readr", + "CATALYST","diffcyt","scran", + "rtracklayer","stringr","tibble","tidyr","magrittr"), version="3.11", quiet=TRUE) #BiocManager::install("tidyverse") #BiocManager::install(c("usethis", "git2r", "devtools", "remotes")) -- GitLab