Newer
Older
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
Scaffold_1 9592 . C T 28.0137 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,0,2;MQ=60;FQ=31.0185;PV4=1,1,1,1 GT:PL 0/1:58,0,121
Scaffold_1 26483 . T G 119.008 PASS DP=28;VDB=0.903987;SGB=-0.691153;RPB=0.635901;MQB=0.367758;MQSB=0.958251;BQB=0.998678;MQ0F=0.178571;AF1=0.50001;AC1=1;DP4=3,6,5,13;MQ=22;FQ=17.1004;PV4=1,0.48299,1,0.332027 GT:PL 0/1:149,0,44
Scaffold_1 26541 . G A 10.42 PASS DP=27;VDB=0.585123;SGB=-0.636426;RPB=0.784887;MQB=0.428866;MQSB=1;BQB=0.862128;MQ0F=0.222222;AF1=0.499975;AC1=1;DP4=1,17,0,7;MQ=19;FQ=13.2199;PV4=1,1,1,1 GT:PL 0/1:40,0,68
Scaffold_1 49689 . G A 126.116 PASS DP=8;VDB=0.0827521;SGB=-0.636426;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.512852;AC1=1;DP4=1,0,1,6;MQ=45;FQ=-14.1556;PV4=0.25,1,0.0881085,1 GT:PL 0/1:156,0,13
Scaffold_1 49701 . A G 128.051 PASS DP=9;VDB=0.215372;SGB=-0.636426;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.505038;AC1=1;DP4=1,0,1,6;MQ=45;FQ=-10.4007;PV4=0.25,0.367882,0.0881085,1 GT:PL 0/1:158,0,17
Scaffold_1 49770 . T C 52.0072 PASS DP=11;VDB=0.150948;SGB=-0.590765;RPB=0.742931;MQB=0.356607;MQSB=0.950952;BQB=0.8618;MQ0F=0;AF1=0.5;AC1=1;DP4=5,1,1,4;MQ=34;FQ=55.0151;PV4=0.0800866,1,0.0883392,1 GT:PL 0/1:82,0,125
Scaffold_1 49797 . C T 49.0072 PASS DP=12;VDB=0.153613;SGB=-0.590765;RPB=0.6821;MQB=0.253351;MQSB=0.935451;BQB=0.896474;MQ0F=0;AF1=0.5;AC1=1;DP4=6,1,1,4;MQ=37;FQ=52.0153;PV4=0.0719697,1,0.0513308,1 GT:PL 0/1:79,0,148
Scaffold_1 49800 . T C 49.0072 PASS DP=12;VDB=0.153613;SGB=-0.590765;RPB=0.6821;MQB=0.253351;MQSB=0.935451;BQB=0.95494;MQ0F=0;AF1=0.5;AC1=1;DP4=6,1,1,4;MQ=37;FQ=52.0153;PV4=0.0719697,0.40769,0.0513308,1 GT:PL 0/1:79,0,148
Scaffold_1 49867 . T C 65.0073 PASS DP=11;VDB=0.794163;SGB=-0.556411;RPB=0.89338;MQB=0.89338;MQSB=0.857143;BQB=0.649731;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,1;MQ=41;FQ=66.8222;PV4=1,1,1,1 GT:PL 0/1:95,0,100
Scaffold_1 49928 . C T 74.0075 PASS DP=7;VDB=0.397076;SGB=-0.556411;RPB=0.5;MQB=0.75;MQSB=0.375;BQB=0.375;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=47;FQ=30.0193;PV4=0.466667,0.0770244,1,1 GT:PL 0/1:104,0,57
Scaffold_1 49940 . T C 46.0073 PASS DP=6;VDB=0.421281;SGB=-0.511536;RPB=1;MQB=0.666667;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.500013;AC1=1;DP4=1,1,1,2;MQ=45;FQ=16.1201;PV4=1,0.247513,1,0.247513 GT:PL 0/1:76,0,43
Scaffold_1 50053 . T C 18.0749 PASS DP=8;VDB=0.32;SGB=-0.453602;RPB=0.166667;MQB=0.166667;MQSB=0.166667;BQB=0.916667;MQ0F=0;AF1=0.499996;AC1=1;DP4=0,6,2,0;MQ=30;FQ=21.0481;PV4=0.0357143,1,1,1 GT:PL 0/1:48,0,84
Scaffold_1 50055 . A G 20.0499 PASS DP=8;VDB=0.32;SGB=-0.453602;RPB=0.166667;MQB=0.166667;MQSB=0.166667;BQB=0.5;MQ0F=0;AF1=0.499997;AC1=1;DP4=0,6,2,0;MQ=30;FQ=23.0349;PV4=0.0357143,1,1,1 GT:PL 0/1:50,0,84
Scaffold_1 50086 . T G 18.0749 PASS DP=8;VDB=0.32;SGB=-0.453602;RPB=0.166667;MQB=0.166667;MQSB=0.166667;BQB=0.666667;MQ0F=0;AF1=0.499996;AC1=1;DP4=0,6,2,0;MQ=30;FQ=21.0481;PV4=0.0357143,0.209877,1,0.0390704 GT:PL 0/1:48,0,84
Scaffold_1 50147 . C A 18.0749 PASS DP=7;VDB=0.138245;SGB=-0.556411;RPB=0;MQB=0;BQB=0.75;MQ0F=0;AF1=0.499997;AC1=1;DP4=0,2,0,4;MQ=39;FQ=20.0845;PV4=1,1,0.00194127,0.304998 GT:PL 0/1:48,0,54
Scaffold_1 51025 . C T 167.067 PASS DP=7;VDB=0.556801;SGB=-0.636426;MQSB=0.810265;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,3;MQ=37;FQ=-47.986 GT:PL 1/1:200,21,0
Scaffold_1 51083 . A G 75.5133 PASS DP=5;VDB=0.168287;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=35;FQ=-38.9864 GT:PL 1/1:108,12,0
Scaffold_1 51097 . C T 72.2635 PASS DP=6;VDB=0.986608;SGB=-0.590765;MQSB=0;MQ0F=0.166667;AF1=1;AC1=2;DP4=0,0,3,2;MQ=32;FQ=-41.9862 GT:PL 1/1:105,15,0
Scaffold_1 51149 . A G 116.264 PASS DP=6;VDB=0.181959;SGB=-0.590765;MQSB=0.666667;MQ0F=0.166667;AF1=1;AC1=2;DP4=0,0,2,3;MQ=46;FQ=-41.9862 GT:PL 1/1:149,15,0
Scaffold_1 51194 . T C 163.067 PASS DP=8;VDB=0.533925;SGB=-0.636426;MQSB=0.810265;MQ0F=0.125;AF1=1;AC1=2;DP4=0,0,4,3;MQ=51;FQ=-47.986 GT:PL 1/1:196,21,0
Scaffold_1 56749 . G C 83.9726 PASS DP=3;VDB=0.460446;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-35.9869 GT:PL 1/1:116,9,0
Scaffold_1 56843 . A G 75.9725 PASS DP=3;VDB=0.617121;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,1;MQ=60;FQ=-35.9869 GT:PL 1/1:108,9,0
Scaffold_1 57322 . T G 166.134 PASS DP=6;VDB=0.80389;SGB=-0.616816;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-44.9861 GT:PL 1/1:199,18,0
Scaffold_1 57323 . G T 161.134 PASS DP=6;VDB=0.796638;SGB=-0.616816;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,2;MQ=60;FQ=-44.9861 GT:PL 1/1:194,18,0
Scaffold_1 60343 . A G 15.1417 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,1,2,0;MQ=60;FQ=18.0829;PV4=1,0.136114,1,1 GT:PL 0/1:45,0,101
Scaffold_1 60594 . G C 16.1143 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499994;AC1=1;DP4=2,2,0,2;MQ=60;FQ=19.069;PV4=0.466667,0.217929,1,1 GT:PL 0/1:46,0,144
Scaffold_1 80262 . A G 28.0137 PASS DP=7;VDB=0.845642;SGB=-0.511536;RPB=0.333333;MQB=0;MQSB=1;BQB=1;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=1,1,3,0;MQ=41;FQ=29.8262;PV4=0.4,0.412556,0.0441941,0.134447 GT:PL 0/1:58,0,63
Scaffold_1 80364 . G A 30.0112 PASS DP=10;VDB=0.765925;SGB=-0.556411;RPB=0.487298;MQB=0.487298;MQSB=0.730948;BQB=0.89338;MQ0F=0.1;AF1=0.5;AC1=1;DP4=2,3,3,1;MQ=33;FQ=33.0172;PV4=0.52381,0.213703,0.0905913,0.426475 GT:PL 0/1:60,0,127
Scaffold_1 80399 . T C 62.0073 PASS DP=14;VDB=0.713234;SGB=-0.590765;RPB=0.908075;MQB=0.989343;MQSB=0.961166;BQB=0.958048;MQ0F=0.0714286;AF1=0.5;AC1=1;DP4=3,5,3,2;MQ=42;FQ=65.0155;PV4=0.592075,1,0.418772,0.324203 GT:PL 0/1:92,0,160
Scaffold_1 80487 . C T 122.008 PASS DP=17;VDB=0.55693;SGB=-0.651104;RPB=0.894337;MQB=0.792156;MQSB=0.878142;BQB=0.702619;MQ0F=0;AF1=0.5;AC1=1;DP4=5,3,6,2;MQ=50;FQ=124.226;PV4=1,1,1,1 GT:PL 0/1:152,0,159
Scaffold_1 80517 . A C 119.008 PASS DP=15;VDB=0.768478;SGB=-0.651104;RPB=0.509156;MQB=0.811936;MQSB=0.997503;BQB=0.991701;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,7,1;MQ=55;FQ=95.0072;PV4=0.244755,1,1,0.329428 GT:PL 0/1:149,0,122
Scaffold_1 82001 . A C 33.0091 PASS DP=11;VDB=0.840365;SGB=-0.556411;RPB=0.503877;MQB=0.335918;MQSB=0.9375;BQB=0.727822;MQ0F=0.0909091;AF1=0.5;AC1=1;DP4=1,5,1,3;MQ=47;FQ=36.0162;PV4=1,1,0.150736,0.111005 GT:PL 0/1:63,0,139
Scaffold_1 108396 . A T 134.008 PASS DP=10;VDB=0.796638;SGB=-0.616816;RPB=0.167959;MQB=0.279932;MQSB=0.428556;BQB=0.895781;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,2,4;MQ=54;FQ=89.0157;PV4=0.52381,0.223407,0.0424144,1 GT:PL 0/1:164,0,116
Scaffold_1 108403 . T C 117.008 PASS DP=10;VDB=0.796638;SGB=-0.616816;RPB=0.167959;MQB=0.279932;MQSB=0.428556;BQB=0.727822;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,2,4;MQ=54;FQ=86.014;PV4=0.52381,0.131792,0.0424144,1 GT:PL 0/1:147,0,113
Scaffold_1 108413 . A T 77.0075 PASS DP=10;VDB=0.725151;SGB=-0.556411;RPB=0.406082;MQB=0.649731;MQSB=0.89338;BQB=0.487298;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,1,3;MQ=53;FQ=80.0122;PV4=0.206349,0.0634081,0.255634,1 GT:PL 0/1:107,0,138
Scaffold_1 108415 . T G 87.0076 PASS DP=10;VDB=0.592802;SGB=-0.590765;RPB=0.333321;MQB=0.523791;MQSB=0.857112;BQB=0.333321;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,1,4;MQ=52;FQ=89.9615;PV4=0.206349,0.0815477,0.169002,1 GT:PL 0/1:117,0,136
Scaffold_1 108424 . G C 70.0074 PASS DP=10;VDB=0.26019;SGB=-0.556411;RPB=0.487298;MQB=0.649731;MQSB=0.89338;BQB=0.89338;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,0,4;MQ=52;FQ=73.0149;PV4=0.047619,0.146176,0.121657,1 GT:PL 0/1:100,0,138
Scaffold_1 108427 . T C 70.0074 PASS DP=9;VDB=0.27062;SGB=-0.556411;RPB=0.487298;MQB=0.649731;MQSB=0.89338;BQB=0.89338;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,0,4;MQ=52;FQ=73.0149;PV4=0.047619,0.146176,0.121657,1 GT:PL 0/1:100,0,138
Scaffold_1 108429 . G A 34.0087 PASS DP=9;VDB=0.519801;SGB=-0.511536;RPB=0.600535;MQB=0.750668;MQSB=0.868321;BQB=0.150134;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,0,3;MQ=53;FQ=37.016;PV4=0.142857,0.0118125,0.198281,1 GT:PL 0/1:64,0,140
Scaffold_1 108497 . C T 61.0073 PASS DP=13;VDB=0.00835905;SGB=-0.556411;RPB=0.125315;MQB=0.913799;MQSB=0.935451;BQB=0.397295;MQ0F=0;AF1=0.5;AC1=1;DP4=1,7,4,0;MQ=57;FQ=64.0155;PV4=0.010101,1,0.240227,1 GT:PL 0/1:91,0,155
Scaffold_1 108630 . A G 18.0749 PASS DP=6;VDB=0.84;SGB=-0.453602;RPB=1;MQB=0;MQSB=0.333333;BQB=0.5;MQ0F=0;AF1=0.499996;AC1=1;DP4=2,1,0,2;MQ=52;FQ=21.0491;PV4=0.4,0.136114,0.00144409,0.136114 GT:PL 0/1:48,0,101
Scaffold_1 108656 . C T 49.0072 PASS DP=7;VDB=0.917785;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=50;FQ=52.0146;PV4=0.4,0.18695,0.000332854,0.115366 GT:PL 0/1:79,0,117
Scaffold_1 108662 . A G 47.0072 PASS DP=7;VDB=0.917785;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=50;FQ=49.961;PV4=0.4,1,0.000332854,0.0586086 GT:PL 0/1:77,0,96
Scaffold_1 108670 . C T 47.0072 PASS DP=7;VDB=0.925064;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.28717;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,3;MQ=50;FQ=50.0149;PV4=0.4,0.150016,0.000332854,0.169591 GT:PL 0/1:77,0,117
Scaffold_1 108686 . A C 23.0285 PASS DP=6;VDB=0.32;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.333333;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,1,0,2;MQ=52;FQ=26.0258;PV4=0.4,0.348214,0.00144409,1 GT:PL 0/1:53,0,113
Scaffold_1 108690 . C T 15.1417 PASS DP=6;VDB=0.28;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.333333;BQB=0.833333;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,1,0,2;MQ=52;FQ=18.0829;PV4=0.4,0.299275,0.00144409,1 GT:PL 0/1:45,0,108
Scaffold_1 108700 . A C 23.0285 PASS DP=6;VDB=0.28;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.333333;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,1,0,2;MQ=52;FQ=26.0258;PV4=0.4,0.361171,0.00144409,1 GT:PL 0/1:53,0,108
Scaffold_1 108701 . A G 26.0177 PASS DP=6;VDB=0.28;SGB=-0.453602;RPB=0;MQB=0;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499999;AC1=1;DP4=1,1,0,2;MQ=50;FQ=29.0096;PV4=1,0.211325,0.0107351,1 GT:PL 0/1:56,0,82
Scaffold_1 108707 . C T 26.0177 PASS DP=6;VDB=0.578719;SGB=-0.511536;RPB=0;MQB=0;MQSB=0;BQB=0.333333;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,0,0,3;MQ=48;FQ=28.9773;PV4=0.1,0.102738,0.00253832,1 GT:PL 0/1:56,0,76
Scaffold_1 108739 . G A 52.0099 PASS DP=4;VDB=0.559209;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=0,1,0,3;MQ=44;FQ=4.13345;PV4=1,0.333333,0.020498,1 GT:PL 0/1:82,0,29
Scaffold_1 108745 . C T 52.0141 PASS DP=4;VDB=0.578719;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500792;AC1=1;DP4=0,1,0,3;MQ=44;FQ=-4.11551;PV4=1,1,0.020498,1 GT:PL 0/1:82,0,25
Scaffold_1 108777 . T C 29.0123 PASS DP=5;VDB=0.6;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=51;FQ=31.686;PV4=1,0.211325,0,1 GT:PL 0/1:59,0,70
Scaffold_1 108778 . G A 29.0123 PASS DP=5;VDB=0.6;SGB=-0.453602;RPB=0.666667;MQB=0;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,2;MQ=53;FQ=32.0069;PV4=1,1,0,1 GT:PL 0/1:59,0,85
Scaffold_1 108786 . A G 32.0097 PASS DP=5;VDB=0.6;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=51;FQ=33.5616;PV4=1,1,0,1 GT:PL 0/1:62,0,66
Scaffold_1 108789 . C A 32.0097 PASS DP=5;VDB=0.6;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=51;FQ=34.3777;PV4=1,1,0,1 GT:PL 0/1:62,0,70
Scaffold_1 111194 . C A 27.0155 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.833333;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,3,2,0;MQ=60;FQ=30.0085;PV4=0.1,1,1,1 GT:PL 0/1:57,0,83
Scaffold_1 121614 . G T 41.0074 PASS DP=8;VDB=0.0588947;SGB=-0.511536;RPB=0.607698;MQB=1.01283;MQSB=1.01283;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,3,0;MQ=60;FQ=44.0149;PV4=0.142857,0.428746,1,1 GT:PL 0/1:71,0,111
Scaffold_1 125670 . C T 13.2188 PASS DP=11;VDB=0.259298;SGB=-0.511536;RPB=0.916482;MQB=0.0916482;MQSB=0.366593;BQB=0.274945;MQ0F=0;AF1=0.499987;AC1=1;DP4=6,1,1,2;MQ=52;FQ=16.1222;PV4=0.183333,1,3.88848e-05,1 GT:PL 0/1:43,0,158
Scaffold_1 125683 . A G 16.1143 PASS DP=9;VDB=0.28399;SGB=-0.511536;RPB=0.450401;MQB=0.150134;MQSB=0.62023;BQB=0.300267;MQ0F=0;AF1=0.499994;AC1=1;DP4=3,2,1,2;MQ=50;FQ=19.069;PV4=1,1,0.000466512,0.290908 GT:PL 0/1:46,0,117
Scaffold_1 125943 . G A 28.0137 PASS DP=13;VDB=0.309755;SGB=-0.511536;RPB=0.995736;MQB=0.25042;MQSB=0.857404;BQB=0.995736;MQ0F=0;AF1=0.5;AC1=1;DP4=2,7,1,2;MQ=56;FQ=31.0185;PV4=1,1,0.00383146,0.429476 GT:PL 0/1:58,0,213
Scaffold_1 127769 . C T 24.0241 PASS DP=8;VDB=0.18;SGB=-0.453602;RPB=0.8;MQB=0.4;MQSB=1;BQB=0.3;MQ0F=0;AF1=0.499999;AC1=1;DP4=4,1,2,0;MQ=52;FQ=27.0236;PV4=1,1,0.175324,1 GT:PL 0/1:54,0,124
Scaffold_1 127774 . G A 27.0155 PASS DP=8;VDB=0.18;SGB=-0.453602;RPB=1;MQB=0.5;MQSB=1;BQB=0.375;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,1,2,0;MQ=51;FQ=30.0193;PV4=1,1,0.237922,1 GT:PL 0/1:57,0,115
Scaffold_1 127778 . C A 37.0079 PASS DP=11;VDB=0.0785113;SGB=-0.511536;RPB=0.916482;MQB=0.0916482;MQSB=0.641538;BQB=0.274945;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,3,0;MQ=55;FQ=40.0156;PV4=0.475,1,4.2619e-05,1 GT:PL 0/1:67,0,184
Scaffold_1 127842 . A G 91.0077 PASS DP=18;VDB=0.814588;SGB=-0.651104;RPB=0.846482;MQB=0.00247875;MQSB=0.318907;BQB=0.743567;MQ0F=0;AF1=0.5;AC1=1;DP4=6,3,8,0;MQ=50;FQ=94.0158;PV4=0.205882,1,8.29409e-06,1 GT:PL 0/1:121,0,211
Scaffold_1 127931 . T C 22.0341 PASS DP=9;VDB=0.0941126;SGB=-0.511536;RPB=0.462292;MQB=0.462292;MQSB=1;BQB=0.924584;MQ0F=0;AF1=0.499998;AC1=1;DP4=5,1,3,0;MQ=46;FQ=25.0286;PV4=1,0.264497,0.0676435,1 GT:PL 0/1:52,0,140
Scaffold_1 127950 . A G 35.0083 PASS DP=8;VDB=0.0175817;SGB=-0.556411;RPB=0.124046;MQB=0.124046;MQSB=0.333333;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,4,0;MQ=47;FQ=38.0158;PV4=0.428571,1,0.00247839,1 GT:PL 0/1:65,0,115
Scaffold_1 128081 . T C 43.0073 PASS DP=12;VDB=0.0815962;SGB=-0.590765;RPB=0.896474;MQB=0.0194886;MQSB=0.3;BQB=0.896474;MQ0F=0;AF1=0.5;AC1=1;DP4=2,5,0,5;MQ=48;FQ=46.0153;PV4=0.469697,0.221537,0.00167059,1 GT:PL 0/1:73,0,181
Scaffold_1 128110 . T C 11.3381 PASS DP=13;VDB=0.878371;SGB=-0.511536;RPB=0.879351;MQB=0.314383;MQSB=0.272727;BQB=0.748798;MQ0F=0;AF1=0.49998;AC1=1;DP4=2,8,0,3;MQ=47;FQ=14.1838;PV4=1,1,0.0229147,0.41582 GT:PL 0/1:41,0,211
Scaffold_1 128134 . C T 11.3381 PASS DP=14;VDB=0.878371;SGB=-0.511536;RPB=0.995736;MQB=0.290822;MQSB=0.151887;BQB=0.857404;MQ0F=0;AF1=0.49998;AC1=1;DP4=3,6,0,3;MQ=48;FQ=14.1838;PV4=0.509091,1,0.0233719,1 GT:PL 0/1:41,0,197
Scaffold_1 130359 . C T 10.42 PASS DP=12;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=0.95494;BQB=0.8;MQ0F=0;AF1=0.499975;AC1=1;DP4=5,5,0,2;MQ=60;FQ=13.2265;PV4=0.469697,1,1,0.059657 GT:PL 0/1:40,0,255
Scaffold_1 150270 . G A 14.1809 PASS DP=11;VDB=0.84;SGB=-0.453602;RPB=0.777778;MQB=0;MQSB=0.263597;BQB=0.666667;MQ0F=0.818182;AF1=1;AC1=2;DP4=1,8,2,0;MQ=17;FQ=-29.9903;PV4=0.0545455,1,1,1 GT:PL 1/1:44,3,0
Scaffold_1 151096 . C A 30.0112 PASS DP=7;VDB=0.64;SGB=-0.453602;RPB=0.75;MQB=0.5;MQSB=0.5;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,1,1;MQ=57;FQ=33.0172;PV4=1,0.316406,0.0889039,1 GT:PL 0/1:60,0,124
Scaffold_1 159167 . C A 10.42 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.444444;MQB=1;MQSB=0.964642;BQB=0.611111;MQ0F=0;AF1=0.499975;AC1=1;DP4=2,7,2,0;MQ=60;FQ=13.2265;PV4=0.109091,0.118591,1,1 GT:PL 0/1:40,0,221
Scaffold_1 168987 . A T 13.2188 PASS DP=9;VDB=0.199299;SGB=-0.511536;RPB=0.462292;MQB=0.809011;MQSB=1;BQB=0.231146;MQ0F=0;AF1=0.499987;AC1=1;DP4=5,1,3,0;MQ=46;FQ=16.1222;PV4=1,0.00936109,0.340493,1 GT:PL 0/1:43,0,118
Scaffold_1 170205 . T C 12.272 PASS DP=21;VDB=0.00201557;SGB=-0.651104;RPB=0.466776;MQB=0.00962298;MQSB=0.804377;BQB=0.742584;MQ0F=0.190476;AF1=0.499984;AC1=1;DP4=3,9,3,5;MQ=34;FQ=15.1496;PV4=0.642415,0.448447,0.000533867,1 GT:PL 0/1:42,0,198
Scaffold_1 170359 . A G 20.0533 PASS DP=4;VDB=0.1;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500394;AC1=1;DP4=1,0,0,2;MQ=46;FQ=3.53201;PV4=0.333333,0.39732,0.233379,1 GT:PL 0/1:50,0,28
Scaffold_1 171337 . T C 35.0083 PASS DP=13;VDB=0.0395055;SGB=-0.556411;RPB=0.0389611;MQB=0.236382;MQSB=0.933909;BQB=0.594978;MQ0F=0.0769231;AF1=0.5;AC1=1;DP4=2,6,1,3;MQ=46;FQ=38.0158;PV4=1,1,0.0381727,1 GT:PL 0/1:65,0,161
Scaffold_1 171363 . T C 32.0097 PASS DP=11;VDB=0.0467807;SGB=-0.556411;RPB=0.924449;MQB=0.361741;MQSB=0.979382;BQB=0.442128;MQ0F=0.0909091;AF1=0.5;AC1=1;DP4=2,5,1,3;MQ=44;FQ=35.0165;PV4=1,1,0.0579965,1 GT:PL 0/1:62,0,141
Scaffold_1 171430 . C T 40.0075 PASS DP=10;VDB=0.036866;SGB=-0.556411;RPB=0.559863;MQB=0.167959;MQSB=1.00775;BQB=0.895781;MQ0F=0.1;AF1=0.5;AC1=1;DP4=3,3,1,3;MQ=46;FQ=43.0154;PV4=0.571429,1,0.0111693,0.361335 GT:PL 0/1:70,0,161
Scaffold_1 174442 . G C 13.2188 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.222222;MQB=1;MQSB=0.950952;BQB=0.555556;MQ0F=0;AF1=0.499987;AC1=1;DP4=4,5,2,0;MQ=60;FQ=16.1222;PV4=0.454545,1,1,0.0968276 GT:PL 0/1:43,0,220
Scaffold_1 175869 . G T 25.0205 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=1;MQSB=1.01283;BQB=0.8;MQ0F=0;AF1=0.499999;AC1=1;DP4=1,4,2,0;MQ=60;FQ=28.0219;PV4=0.142857,1,1,1 GT:PL 0/1:55,0,145
Scaffold_1 177174 . G T 43.5131 PASS DP=6;VDB=0.220638;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,2;MQ=60;FQ=-38.9864 GT:PL 1/1:76,12,0
Scaffold_1 185504 . C A 19.061 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.571429;MQB=0.857143;MQSB=0.857143;BQB=0.857143;MQ0F=0;AF1=0.499997;AC1=1;DP4=5,2,2,0;MQ=59;FQ=22.0421;PV4=1,1,1,1 GT:PL 0/1:49,0,198
Scaffold_1 185517 . C A 16.1143 PASS DP=13;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0.875;MQSB=0.875;BQB=1;MQ0F=0;AF1=0.499994;AC1=1;DP4=6,2,2,0;MQ=59;FQ=19.069;PV4=1,0.350592,1,0.000109499 GT:PL 0/1:46,0,225
Scaffold_1 197314 . A G 40.0075 PASS DP=18;VDB=0.186688;SGB=-0.616816;RPB=0.620971;MQB=0.0292791;MQSB=0.983592;BQB=0.948436;MQ0F=0.0555556;AF1=0.5;AC1=1;DP4=6,4,6,0;MQ=41;FQ=43.0154;PV4=0.233516,0.490603,0.012066,0.0290181 GT:PL 0/1:70,0,224
Scaffold_1 198349 . A G 18.0749 PASS DP=33;VDB=0.0247636;SGB=-0.636426;RPB=0.603379;MQB=0.219802;MQSB=0.0544055;BQB=0.706505;MQ0F=0.515152;AF1=0.499996;AC1=1;DP4=8,15,4,3;MQ=19;FQ=21.0486;PV4=0.391547,1,1,1 GT:PL 0/1:48,0,87
Scaffold_1 198355 . C T 87.0082 PASS DP=31;VDB=0.280152;SGB=-0.676189;RPB=0.291197;MQB=0.00878864;MQSB=0.138153;BQB=0.981422;MQ0F=0.516129;AF1=0.500063;AC1=1;DP4=6,13,6,5;MQ=18;FQ=9.5281;PV4=0.266258,1,1,1 GT:PL 0/1:117,0,36
Scaffold_1 198403 . C T 62.0073 PASS DP=32;VDB=0.916667;SGB=-0.662043;RPB=0.937241;MQB=0.236815;MQSB=0.976181;BQB=0.999669;MQ0F=0.375;AF1=0.5;AC1=1;DP4=8,10,4,5;MQ=22;FQ=65.0086;PV4=1,1,1,0.368002 GT:PL 0/1:92,0,120
Scaffold_1 198782 . T G 36.1285 PASS DP=14;VDB=0.00476095;SGB=-0.616816;RPB=0.811936;MQB=0.00822975;MQSB=0.5;BQB=0.875173;MQ0F=0.571429;AF1=1;AC1=2;DP4=2,6,0,6;MQ=15;FQ=-27.9926;PV4=0.472527,0.445815,1,1 GT:PL 1/1:65,1,0
Scaffold_1 199555 . C T 19.0611 PASS DP=9;VDB=0.0681597;SGB=-0.511536;RPB=0.462292;MQB=0.462292;MQSB=0;BQB=0.809011;MQ0F=0.111111;AF1=0.500009;AC1=1;DP4=0,6,2,1;MQ=23;FQ=15.1756;PV4=0.0833333,1,1,1 GT:PL 0/1:49,0,43
Scaffold_1 199570 . C T 68.0076 PASS DP=11;VDB=0.858927;SGB=-0.556411;RPB=0.643095;MQB=0.0401934;MQSB=0.444444;BQB=0.924449;MQ0F=0.0909091;AF1=0.50002;AC1=1;DP4=0,7,2,2;MQ=30;FQ=14.1838;PV4=0.109091,1,1,0.0201735 GT:PL 0/1:98,0,41
Scaffold_1 199603 . G T 136.041 PASS DP=11;VDB=0.346864;SGB=-0.670168;RPB=1;MQB=1;MQSB=0.444444;BQB=1;MQ0F=0.0909091;AF1=1;AC1=2;DP4=0,1,2,8;MQ=30;FQ=-49.986;PV4=1,0.307615,1,1 GT:PL 1/1:169,23,0
Scaffold_1 199617 . G T 36.0082 PASS DP=12;VDB=0.905887;SGB=-0.511536;RPB=0.231146;MQB=0.115573;MQSB=0.142857;BQB=0.809011;MQ0F=0.0833333;AF1=0.50001;AC1=1;DP4=0,6,2,1;MQ=31;FQ=17.0736;PV4=0.0833333,0.23552,1,1 GT:PL 0/1:66,0,44
Scaffold_1 199663 . G A 102.177 PASS DP=7;VDB=0.444886;SGB=-0.590765;RPB=0;MQB=0;MQSB=1;BQB=0.4;MQ0F=0;AF1=0.520679;AC1=1;DP4=0,2,1,4;MQ=40;FQ=-16.0937;PV4=1,1,1,1 GT:PL 0/1:132,0,11
Scaffold_1 199746 . G A 100.514 PASS DP=4;VDB=0.38486;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,3;MQ=42;FQ=-38.9864 GT:PL 1/1:133,12,0
Scaffold_1 199785 . T A 38.7651 PASS DP=2;VDB=0.52;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=38;FQ=-32.988 GT:PL 1/1:70,6,0
Scaffold_1 210848 . A G 36.0081 PASS DP=10;VDB=0.5;SGB=-0.511536;RPB=0.28717;MQB=0.28717;MQSB=0.75;BQB=0.28717;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,2,1;MQ=49;FQ=38.6018;PV4=1,1,0.0464433,1 GT:PL 0/1:66,0,76
Scaffold_1 210910 . A G 19.061 PASS DP=7;VDB=0.6;SGB=-0.453602;RPB=0.4;MQB=0;MQSB=0.7;BQB=0.8;MQ0F=0;AF1=0.499997;AC1=1;DP4=1,4,1,1;MQ=55;FQ=22.0421;PV4=1,1,0.00298206,0.290829 GT:PL 0/1:49,0,127
Scaffold_1 211879 . G A 18.0749 PASS DP=14;VDB=0.259298;SGB=-0.511536;RPB=0.414697;MQB=0.774755;MQSB=0.803868;BQB=1;MQ0F=0.285714;AF1=0.499996;AC1=1;DP4=5,3,2,1;MQ=27;FQ=20.9423;PV4=1,0.442203,1,0.288381 GT:PL 0/1:48,0,64
Scaffold_1 211906 . C T 34.0224 PASS DP=15;VDB=0.484771;SGB=-0.556411;RPB=0.62023;MQB=0.62023;MQSB=0.450401;BQB=0.992367;MQ0F=0.2;AF1=0.501582;AC1=1;DP4=2,2,3,1;MQ=24;FQ=-6.18248;PV4=1,1,1,1 GT:PL 0/1:64,0,22
Scaffold_1 211917 . T A 18.075 PASS DP=14;VDB=0.319981;SGB=-0.556411;RPB=0.868321;MQB=0.868321;MQSB=0.75;BQB=0.868321;MQ0F=0.142857;AF1=0.499999;AC1=1;DP4=4,0,2,2;MQ=24;FQ=18.9462;PV4=0.428571,1,0.469346,1 GT:PL 0/1:48,0,50
Scaffold_1 226363 . C A 31.0104 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,2,0;MQ=60;FQ=34.0099;PV4=0.1,1,1,0.0842146 GT:PL 0/1:61,0,89
Scaffold_1 226411 . A G 23.0285 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,1,2,0;MQ=52;FQ=26.0258;PV4=1,0.136114,0,0.327926 GT:PL 0/1:53,0,101
Scaffold_1 226437 . G A 18.0749 PASS DP=4;VDB=0.06;SGB=-0.453602;RPB=0;MQB=0;BQB=0.5;MQ0F=0;AF1=0.499996;AC1=1;DP4=2,0,2,0;MQ=50;FQ=20.915;PV4=1,0.211325,0,1 GT:PL 0/1:48,0,63
Scaffold_1 226446 . A T 14.176 PASS DP=4;VDB=0.1;SGB=-0.453602;RPB=0;MQB=0;BQB=1;MQ0F=0;AF1=0.499995;AC1=1;DP4=2,0,2,0;MQ=50;FQ=15.3782;PV4=1,0.481405,0,1 GT:PL 0/1:44,0,47
Scaffold_1 226471 . G A 20.0499 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.625;MQ0F=0;AF1=0.499997;AC1=1;DP4=3,1,2,0;MQ=53;FQ=23.0366;PV4=1,1,0,1 GT:PL 0/1:50,0,106
Scaffold_1 226472 . A C 20.0499 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.499997;AC1=1;DP4=3,1,2,0;MQ=53;FQ=23.0366;PV4=1,1,0,1 GT:PL 0/1:50,0,124
Scaffold_1 226476 . T G 12.272 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.875;MQ0F=0;AF1=0.499984;AC1=1;DP4=3,1,2,0;MQ=53;FQ=15.1496;PV4=1,0.361108,0,1 GT:PL 0/1:42,0,113
Scaffold_1 226480 . T C 12.272 PASS DP=6;VDB=0.18;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.625;MQ0F=0;AF1=0.499984;AC1=1;DP4=3,1,2,0;MQ=53;FQ=15.1496;PV4=1,0.216543,0,1 GT:PL 0/1:42,0,120
Scaffold_1 226523 . C T 15.1417 PASS DP=5;VDB=0.26;SGB=-0.453602;RPB=0;MQB=0;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,1,2,0;MQ=52;FQ=18.0829;PV4=1,0.290859,0,0.437356 GT:PL 0/1:45,0,94
Scaffold_1 226579 . G A 18.0749 PASS DP=7;VDB=0.06;SGB=-0.453602;RPB=0.2;MQB=0;MQSB=0.405132;BQB=0.4;MQ0F=0;AF1=0.499996;AC1=1;DP4=4,1,0,2;MQ=54;FQ=21.0492;PV4=0.142857,0.404031,0,0.0774773 GT:PL 0/1:48,0,139
Scaffold_1 226602 . C T 18.0749 PASS DP=7;VDB=0.1;SGB=-0.453602;RPB=0.2;MQB=0;MQSB=0.405132;BQB=0.5;MQ0F=0;AF1=0.499996;AC1=1;DP4=4,1,0,2;MQ=54;FQ=21.0492;PV4=0.142857,0.0586934,0,1 GT:PL 0/1:48,0,147
Scaffold_1 226614 . G A 13.2188 PASS DP=7;VDB=0.1;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0.405132;BQB=0.7;MQ0F=0;AF1=0.499987;AC1=1;DP4=4,1,0,2;MQ=54;FQ=16.1222;PV4=0.142857,0.256655,0,1 GT:PL 0/1:43,0,142
Scaffold_1 226619 . G A 18.0749 PASS DP=7;VDB=0.1;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0.405132;BQB=0.9;MQ0F=0;AF1=0.499996;AC1=1;DP4=4,1,0,2;MQ=54;FQ=21.0492;PV4=0.142857,1,0,1 GT:PL 0/1:48,0,134
Scaffold_1 226639 . C T 23.0285 PASS DP=6;VDB=0.1;SGB=-0.453602;RPB=1;MQB=0;MQSB=0;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,0,0,2;MQ=52;FQ=26.0172;PV4=0.1,1,0,1 GT:PL 0/1:53,0,80
Scaffold_1 226642 . A G 23.0285 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=0.666667;MQB=0;MQSB=0;BQB=0.666667;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,0,0,2;MQ=52;FQ=26.0172;PV4=0.1,1,0,1 GT:PL 0/1:53,0,80
Scaffold_1 226655 . A G 18.0749 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=1;MQB=0;MQSB=0;BQB=0.6;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,0,0,2;MQ=54;FQ=21.0492;PV4=0.047619,1,0,1 GT:PL 0/1:48,0,120
Scaffold_1 226663 . T A 11.3381 PASS DP=8;VDB=0.14;SGB=-0.453602;RPB=0.833333;MQB=0;MQSB=0;BQB=0.833333;MQ0F=0;AF1=0.49998;AC1=1;DP4=6,0,0,2;MQ=55;FQ=14.1838;PV4=0.0357143,1,0,1 GT:PL 0/1:41,0,122
Scaffold_1 226668 . T C 11.3381 PASS DP=8;VDB=0.14;SGB=-0.453602;RPB=0.833333;MQB=0;MQSB=0;BQB=0.666667;MQ0F=0;AF1=0.49998;AC1=1;DP4=6,0,0,2;MQ=55;FQ=14.1838;PV4=0.0357143,0.237059,0,1 GT:PL 0/1:41,0,135
Scaffold_1 226670 . C T 18.0749 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0;BQB=0.5;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,0,0,2;MQ=54;FQ=21.0492;PV4=0.047619,0.0586934,0,1 GT:PL 0/1:48,0,127
Scaffold_1 226672 . A G 18.0749 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0;BQB=0.6;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,0,0,2;MQ=54;FQ=21.0492;PV4=0.047619,1,0,1 GT:PL 0/1:48,0,123
Scaffold_1 226677 . A G 18.0749 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0;BQB=0.8;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,0,0,2;MQ=54;FQ=21.0492;PV4=0.047619,1,0,1 GT:PL 0/1:48,0,120
Scaffold_1 226684 . T A 12.272 PASS DP=9;VDB=0.14;SGB=-0.453602;RPB=0.428571;MQB=0;MQSB=0.487298;BQB=0.428571;MQ0F=0;AF1=0.499984;AC1=1;DP4=5,2,0,2;MQ=56;FQ=15.1496;PV4=0.166667,1,0,1 GT:PL 0/1:42,0,168
Scaffold_1 226688 . G T 12.272 PASS DP=9;VDB=0.14;SGB=-0.453602;RPB=0.428571;MQB=0;MQSB=0.487298;BQB=0.642857;MQ0F=0;AF1=0.499984;AC1=1;DP4=5,2,0,2;MQ=56;FQ=15.1496;PV4=0.166667,0.172699,0,1 GT:PL 0/1:42,0,193
Scaffold_1 241926 . A G 31.0104 PASS DP=9;VDB=0.0649539;SGB=-0.511536;RPB=0.924584;MQB=0.115573;MQSB=0.730948;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,1,2;MQ=53;FQ=34.0168;PV4=0.52381,1,0.00142623,1 GT:PL 0/1:61,0,166
Scaffold_1 241934 . T C 34.0087 PASS DP=9;VDB=0.0649539;SGB=-0.511536;RPB=0.900802;MQB=0.150134;MQSB=0.868321;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,1,2;MQ=52;FQ=37.016;PV4=1,1,0.00348109,1 GT:PL 0/1:64,0,125
Scaffold_1 269290 . C A 16.1143 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1.00775;BQB=0.375;MQ0F=0;AF1=0.499994;AC1=1;DP4=4,4,0,2;MQ=60;FQ=19.069;PV4=0.466667,1,1,1 GT:PL 0/1:46,0,200
Scaffold_1 276463 . C A 18.0749 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0.8;MQSB=0.5;BQB=0.6;MQ0F=0;AF1=0.499996;AC1=1;DP4=3,2,2,0;MQ=59;FQ=21.0492;PV4=1,1,1,1 GT:PL 0/1:48,0,120
Scaffold_1 277504 . G A 19.061 PASS DP=9;VDB=0.6;SGB=-0.453602;RPB=0.571429;MQB=0;MQSB=0.809011;BQB=0.857143;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,3,2,0;MQ=58;FQ=22.0421;PV4=0.5,1,0.00686869,1 GT:PL 0/1:49,0,196
Scaffold_1 277513 . G A 19.061 PASS DP=9;VDB=0.6;SGB=-0.453602;RPB=0.571429;MQB=0;MQSB=0.809011;BQB=0.571429;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,3,2,0;MQ=58;FQ=22.0421;PV4=0.5,1,0.00686869,1 GT:PL 0/1:49,0,189
Scaffold_1 278418 . T C 10.4212 PASS DP=3;VDB=0.36;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500133;AC1=1;DP4=0,1,1,1;MQ=60;FQ=5.72748;PV4=1,0.0816925,1,1 GT:PL 0/1:40,0,32
Scaffold_1 278530 . T C 10.42 PASS DP=8;VDB=0.52;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.5;BQB=0.25;MQ0F=0;AF1=0.499975;AC1=1;DP4=2,2,2,0;MQ=52;FQ=13.2265;PV4=0.466667,1,0.00356303,1 GT:PL 0/1:40,0,118
Scaffold_1 278638 . G C 19.061 PASS DP=9;VDB=0.52;SGB=-0.453602;RPB=0.285714;MQB=0.571429;MQSB=0.346719;BQB=0.714286;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,3,2,0;MQ=51;FQ=22.0421;PV4=0.5,1,0.414515,0.477422 GT:PL 0/1:49,0,176
Scaffold_1 278647 . A C 45.0072 PASS DP=8;VDB=0.765925;SGB=-0.556411;RPB=0.202566;MQB=0.202566;MQSB=0.2;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,4,0;MQ=48;FQ=47.988;PV4=0.142857,0.218294,0.0414499,1 GT:PL 0/1:75,0,97
Scaffold_1 278666 . C T 16.1143 PASS DP=6;VDB=0.52;SGB=-0.453602;RPB=1;MQB=0.5;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499994;AC1=1;DP4=3,1,2,0;MQ=40;FQ=19.0673;PV4=1,0.0889039,1,1 GT:PL 0/1:46,0,80
Scaffold_1 278677 . C T 13.2188 PASS DP=7;VDB=0.28;SGB=-0.453602;RPB=0.5;MQB=0.375;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499987;AC1=1;DP4=4,0,1,1;MQ=41;FQ=16.1209;PV4=0.333333,1,0.206572,1 GT:PL 0/1:43,0,78
Scaffold_1 278679 . C T 16.1143 PASS DP=6;VDB=0.32;SGB=-0.453602;RPB=0.666667;MQB=0.5;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.499994;AC1=1;DP4=3,0,1,1;MQ=36;FQ=19.0016;PV4=0.4,1,0.319784,1 GT:PL 0/1:46,0,64
Scaffold_1 278739 . G A 25.0205 PASS DP=9;VDB=0.172729;SGB=-0.511536;RPB=0.202566;MQB=0.202566;MQSB=0.810265;BQB=0.810265;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,2,2,1;MQ=49;FQ=28.0219;PV4=1,0.219985,0.000817346,1 GT:PL 0/1:55,0,145
Scaffold_1 278818 . C A 129.646 PASS DP=9;VDB=0.557348;SGB=-0.590765;RPB=0.8;MQB=0;MQSB=0.6;BQB=0.6;MQ0F=0;AF1=0.593902;AC1=1;DP4=2,0,3,2;MQ=51;FQ=-22.013;PV4=1,1,1,1 GT:PL 0/1:159,0,5
Scaffold_1 278852 . T C 12.272 PASS DP=9;VDB=0.585652;SGB=-0.556411;RPB=0.405132;MQB=0.202566;MQSB=1;BQB=0.607698;MQ0F=0;AF1=0.499984;AC1=1;DP4=1,2,1,3;MQ=43;FQ=15.1496;PV4=1,0.0845167,0.0225124,0.364517 GT:PL 0/1:42,0,111
Scaffold_1 278863 . A T 23.0285 PASS DP=9;VDB=0.431509;SGB=-0.590765;RPB=0.600535;MQB=0.150134;MQSB=1;BQB=0.450401;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,3,1,4;MQ=43;FQ=26.0215;PV4=1,0.146577,0.0236387,0.121236 GT:PL 0/1:53,0,83
Scaffold_1 278931 . C G 25.0205 PASS DP=8;VDB=0.0481132;SGB=-0.511536;RPB=1.01283;MQB=0.607698;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,0,3;MQ=36;FQ=26.2609;PV4=1,0.142795,1,1 GT:PL 0/1:55,0,58
Scaffold_1 278937 . C T 17.0924 PASS DP=9;VDB=0.1;SGB=-0.453602;RPB=0.857143;MQB=1;MQSB=1;BQB=0.428571;MQ0F=0;AF1=0.499995;AC1=1;DP4=2,5,0,2;MQ=43;FQ=20.058;PV4=1,1,1,1 GT:PL 0/1:47,0,122
Scaffold_1 278938 . T G 26.0177 PASS DP=9;VDB=0.211317;SGB=-0.556411;RPB=0.405132;MQB=0.810265;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.500001;AC1=1;DP4=0,3,1,3;MQ=36;FQ=22.8442;PV4=1,1,0.408803,1 GT:PL 0/1:56,0,51
Scaffold_1 278959 . C A 17.0924 PASS DP=9;VDB=0.1;SGB=-0.453602;RPB=0.571429;MQB=0.714286;MQSB=1;BQB=0.857143;MQ0F=0;AF1=0.499995;AC1=1;DP4=1,6,0,2;MQ=38;FQ=20.058;PV4=1,1,1,1 GT:PL 0/1:47,0,118
Scaffold_1 278999 . C T 38.0131 PASS DP=6;VDB=0.459448;SGB=-0.556411;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=0,1,1,3;MQ=36;FQ=-3.53106;PV4=1,1,0.026655,0.306203 GT:PL 0/1:68,0,26
Scaffold_1 279626 . C T 101.973 PASS DP=4;VDB=0.539554;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,2;MQ=60;FQ=-35.9869 GT:PL 1/1:134,9,0
Scaffold_1 281063 . T A 32.4619 PASS DP=5;VDB=0.21346;SGB=-0.511536;RPB=1;MQB=1;MQSB=0;BQB=1;MQ0F=0.2;AF1=0.829413;AC1=1;DP4=0,1,2,1;MQ=29;FQ=-25.9966;PV4=1,0.246411,1,0.333333 GT:PL 0/1:61,0,1
Scaffold_1 282685 . C T 25.1277 PASS DP=3;VDB=0.06;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.512851;AC1=1;DP4=1,0,2,0;MQ=47;FQ=-14.1559;PV4=1,1,1,1 GT:PL 0/1:55,0,13
Scaffold_1 282806 . A G 20.8005 PASS DP=4;VDB=0.36;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=31;FQ=-32.988 GT:PL 1/1:52,6,0
Scaffold_1 282826 . T G 26.9806 PASS DP=4;VDB=0.354794;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=26;FQ=-35.9869 GT:PL 1/1:59,9,0
Scaffold_1 282827 . C T 20.5794 PASS DP=4;VDB=0.354794;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,1,3,0;MQ=23;FQ=-28.9912;PV4=0.25,1,1,1 GT:PL 1/1:50,2,0
Scaffold_1 282866 . T A 11.3413 PASS DP=5;VDB=0.5;SGB=-0.453602;RPB=0.25;MQB=0.75;MQSB=0.75;BQB=0.25;MQ0F=0;AF1=0.500377;AC1=1;DP4=0,2,2,0;MQ=30;FQ=3.42997;PV4=0.333333,1,1,0.211325 GT:PL 0/1:41,0,28
Scaffold_1 283072 . G A 11.1139 PASS DP=3;VDB=0.28;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=29;FQ=-32.9882 GT:PL 1/1:42,6,0
Scaffold_1 284971 . G C 12.5219 PASS DP=13;VDB=0.167399;SGB=-0.590765;RPB=0.0540977;MQB=0.0452104;MQSB=0.909091;BQB=0.976181;MQ0F=0.307692;AF1=0.533571;AC1=1;DP4=2,6,0,5;MQ=16;FQ=-18.0562;PV4=0.487179,0.289001,1,1 GT:PL 0/1:42,0,9
Scaffold_1 285020 . C T 13.4716 PASS DP=10;VDB=0.170249;SGB=-0.590765;RPB=0.238087;MQB=0.0952347;MQSB=0.625;BQB=0.761877;MQ0F=0.2;AF1=0.533574;AC1=1;DP4=2,3,0,5;MQ=18;FQ=-18.0558;PV4=0.444444,1,1,1 GT:PL 0/1:43,0,9
Scaffold_1 285069 . C T 27.5284 PASS DP=4;VDB=0.107235;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.571815;AC1=1;DP4=0,1,0,3;MQ=25;FQ=-21.0201;PV4=1,1,1,1 GT:PL 0/1:57,0,6
Scaffold_1 285087 . G A 22.7872 PASS DP=2;VDB=0.14;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=30;FQ=-32.988 GT:PL 1/1:54,6,0
Scaffold_1 285094 . C T 22.7872 PASS DP=2;VDB=0.1;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=30;FQ=-32.988 GT:PL 1/1:54,6,0
Scaffold_1 285458 . A G 23.7825 PASS DP=2;VDB=0.02;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=30;FQ=-32.988 GT:PL 1/1:55,6,0
Scaffold_1 285501 . G A 21.0411 PASS DP=7;VDB=0.22;SGB=-0.453602;RPB=0.4;MQB=0.4;BQB=0.9;MQ0F=0;AF1=0.499998;AC1=1;DP4=5,0,2,0;MQ=36;FQ=24.0321;PV4=1,1,1,0.0506046 GT:PL 0/1:51,0,102
Scaffold_1 285528 . T C 43.0073 PASS DP=7;VDB=0.0433485;SGB=-0.511536;RPB=0.810265;MQB=1.01283;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=4,0,3,0;MQ=36;FQ=45.961;PV4=1,1,1,1 GT:PL 0/1:73,0,92
Scaffold_1 285562 . A G 17.0924 PASS DP=10;VDB=0.22;SGB=-0.453602;RPB=0.857143;MQB=0.285714;BQB=0.571429;MQ0F=0;AF1=0.499995;AC1=1;DP4=7,0,2,0;MQ=32;FQ=20.058;PV4=1,1,1,1 GT:PL 0/1:47,0,104
Scaffold_1 285573 . T A 35.0083 PASS DP=10;VDB=0.0588947;SGB=-0.511536;RPB=0.824834;MQB=0.641538;BQB=0.641538;MQ0F=0;AF1=0.5;AC1=1;DP4=7,0,3,0;MQ=31;FQ=38.0049;PV4=1,1,1,1 GT:PL 0/1:65,0,91
Scaffold_1 285609 . C T 69.0074 PASS DP=11;VDB=0.884234;SGB=-0.590765;RPB=0.564628;MQB=0.683497;MQSB=1;BQB=0.950952;MQ0F=0;AF1=0.5;AC1=1;DP4=6,0,4,1;MQ=34;FQ=47.0016;PV4=0.454545,1,1,0.285281 GT:PL 0/1:99,0,74
Scaffold_1 285693 . C T 25.0205 PASS DP=11;VDB=0.220755;SGB=-0.511536;RPB=0.594025;MQB=1;MQSB=0.924449;BQB=0.994805;MQ0F=0;AF1=0.499999;AC1=1;DP4=6,2,1,2;MQ=37;FQ=28.0219;PV4=0.490909,0.439908,1,1 GT:PL 0/1:55,0,154
Scaffold_1 285707 . C T 74.0075 PASS DP=11;VDB=0.934887;SGB=-0.590765;RPB=0.475476;MQB=0.8618;MQSB=0.964642;BQB=0.683497;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,2;MQ=39;FQ=77.0143;PV4=1,0.152044,1,1 GT:PL 0/1:104,0,139
Scaffold_1 285708 . G A 27.0155 PASS DP=11;VDB=0.152777;SGB=-0.556411;RPB=0.442128;MQB=0.924449;MQSB=0.964642;BQB=0.442128;MQ0F=0;AF1=0.499999;AC1=1;DP4=5,2,2,2;MQ=39;FQ=30.0194;PV4=0.575758,0.040042,0.440699,0.277494 GT:PL 0/1:57,0,147
Scaffold_1 285712 . A T 73.0074 PASS DP=11;VDB=0.913383;SGB=-0.556411;RPB=0.89338;MQB=0.487298;MQSB=0.89338;BQB=0.649731;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,2,2;MQ=40;FQ=75.6017;PV4=1,1,1,1 GT:PL 0/1:103,0,113
Scaffold_1 285784 . G A 20.0499 PASS DP=20;VDB=0.71601;SGB=-0.511536;RPB=0.46131;MQB=0.46131;MQSB=0.951002;BQB=0.893793;MQ0F=0.1;AF1=0.499997;AC1=1;DP4=8,7,3,0;MQ=36;FQ=23.0366;PV4=0.245098,0.47158,1,0.130756 GT:PL 0/1:50,0,232
Scaffold_1 285786 . G A 27.0155 PASS DP=20;VDB=0.552878;SGB=-0.590765;RPB=0.288308;MQB=0.885629;MQSB=0.951002;BQB=0.980754;MQ0F=0.1;AF1=0.499999;AC1=1;DP4=9,4,2,3;MQ=36;FQ=30.0194;PV4=0.32598,1,1,0.354146 GT:PL 0/1:57,0,225
Scaffold_1 285798 . C T 164.009 PASS DP=19;VDB=0.372756;SGB=-0.670168;RPB=0.776754;MQB=0.387378;MQSB=0.983729;BQB=0.824135;MQ0F=0.105263;AF1=0.5;AC1=1;DP4=6,2,5,5;MQ=36;FQ=105.016;PV4=0.366516,1,1,1 GT:PL 0/1:194,0,132
Scaffold_1 285799 . G A 29.0123 PASS DP=19;VDB=0.301053;SGB=-0.511536;RPB=0.228678;MQB=0.102932;MQSB=0.965097;BQB=0.993007;MQ0F=0.105263;AF1=0.5;AC1=1;DP4=9,6,1,2;MQ=36;FQ=32.0178;PV4=0.558824,1,1,1 GT:PL 0/1:59,0,238
Scaffold_1 285821 . C T 15.1417 PASS DP=19;VDB=0.372756;SGB=-0.556411;RPB=0.457833;MQB=0.882497;MQSB=0.996597;BQB=0.809572;MQ0F=0.105263;AF1=0.499992;AC1=1;DP4=11,4,0,4;MQ=35;FQ=18.0829;PV4=0.0180599,0.14488,1,0.0915885 GT:PL 0/1:45,0,230
Scaffold_1 285829 . T C 31.0104 PASS DP=19;VDB=0.281254;SGB=-0.556411;RPB=0.980199;MQB=0.923116;MQSB=0.957193;BQB=0.75484;MQ0F=0.105263;AF1=0.5;AC1=1;DP4=10,5,2,2;MQ=34;FQ=34.0168;PV4=0.602683,1,1,1 GT:PL 0/1:61,0,221
Scaffold_1 285870 . A G 39.0076 PASS DP=14;VDB=0.875967;SGB=-0.556411;RPB=0.466776;MQB=0.742584;MQSB=0.944459;BQB=0.928296;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=8,1,2,2;MQ=30;FQ=42.0137;PV4=0.202797,0.494358,1,0.0184981 GT:PL 0/1:69,0,103
Scaffold_1 286087 . C G 24.0241 PASS DP=19;VDB=0.582158;SGB=-0.616816;RPB=0.948436;MQB=0.948436;MQSB=0.971017;BQB=0.809155;MQ0F=0.0526316;AF1=0.499999;AC1=1;DP4=2,8,2,4;MQ=27;FQ=27.0236;PV4=0.604396,0.0555764,0.325672,1 GT:PL 0/1:54,0,137
Scaffold_1 286132 . C T 44.0073 PASS DP=22;VDB=0.783783;SGB=-0.636426;RPB=0.267278;MQB=0.470332;MQSB=0.845852;BQB=0.797045;MQ0F=0;AF1=0.5;AC1=1;DP4=4,9,4,3;MQ=29;FQ=47.0153;PV4=0.356347,0.266169,0.122485,0.073093 GT:PL 0/1:74,0,193
Scaffold_1 286137 . T A 14.176 PASS DP=22;VDB=0.470313;SGB=-0.511536;RPB=0.542747;MQB=0.25284;MQSB=0.748924;BQB=0.633936;MQ0F=0;AF1=0.49999;AC1=1;DP4=6,12,2,1;MQ=30;FQ=17.1004;PV4=0.530827,1,1,1 GT:PL 0/1:44,0,194
Scaffold_1 286145 . G A 24.0241 PASS DP=21;VDB=0.160409;SGB=-0.556411;RPB=0.990006;MQB=0.167677;MQSB=0.845852;BQB=0.972484;MQ0F=0;AF1=0.499999;AC1=1;DP4=8,8,0,4;MQ=29;FQ=27.0236;PV4=0.116615,0.364441,1,1 GT:PL 0/1:54,0,191
Scaffold_1 286154 . G A 167.178 PASS DP=20;VDB=0.0354852;SGB=-0.688148;RPB=0.576229;MQB=0.606531;MQSB=0.933295;BQB=0.998751;MQ0F=0;AF1=0.520679;AC1=1;DP4=0,4,8,7;MQ=29;FQ=-16.0937;PV4=0.103199,1,1,1 GT:PL 0/1:197,0,11
Scaffold_1 286155 . C T 158.009 PASS DP=20;VDB=0.120659;SGB=-0.676189;RPB=0.686704;MQB=0.0833066;MQSB=0.933295;BQB=0.758709;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,4,7;MQ=29;FQ=33.0172;PV4=0.657696,1,1,1 GT:PL 0/1:188,0,60
Scaffold_1 286163 . A C 191.178 PASS DP=21;VDB=0.0981525;SGB=-0.688148;RPB=0.486752;MQB=0.606531;MQSB=0.959099;BQB=0.666977;MQ0F=0;AF1=0.520679;AC1=1;DP4=0,4,8,7;MQ=28;FQ=-16.0937;PV4=0.103199,1,1,1 GT:PL 0/1:221,0,11
Scaffold_1 286188 . T A 18.0749 PASS DP=20;VDB=0.160409;SGB=-0.556411;RPB=0.378164;MQB=0.288619;MQSB=0.993603;BQB=0.88901;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,7,0,4;MQ=32;FQ=21.0492;PV4=0.244505,0.216105,1,0.180549 GT:PL 0/1:48,0,182
Scaffold_1 286192 . A C 24.0241 PASS DP=20;VDB=0.160409;SGB=-0.556411;RPB=0.537025;MQB=0.236074;MQSB=0.769146;BQB=0.987392;MQ0F=0;AF1=0.499999;AC1=1;DP4=7,7,0,4;MQ=31;FQ=27.0236;PV4=0.119281,0.491162,1,0.294922 GT:PL 0/1:54,0,184
Scaffold_1 286233 . G A 49.0072 PASS DP=15;VDB=0.255054;SGB=-0.556411;RPB=0.697676;MQB=0.527292;MQSB=0.84472;BQB=0.960789;MQ0F=0;AF1=0.5;AC1=1;DP4=5,5,1,3;MQ=29;FQ=52.0153;PV4=0.58042,0.330719,1,1 GT:PL 0/1:79,0,151
Scaffold_1 286259 . T A 11.3407 PASS DP=6;VDB=0.76;SGB=-0.453602;RPB=0.666667;MQB=0.333333;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.500295;AC1=1;DP4=1,2,0,2;MQ=26;FQ=3.97226;PV4=1,1,1,1 GT:PL 0/1:41,0,29
Scaffold_1 286427 . C T 21.0519 PASS DP=8;VDB=0.116687;SGB=-0.511536;RPB=0.574341;MQB=0.574341;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.501254;AC1=1;DP4=0,3,1,2;MQ=23;FQ=-5.44992;PV4=1,1,1,0.268019 GT:PL 0/1:51,0,23
Scaffold_1 286781 . C T 61.9723 PASS DP=3;VDB=0.0649539;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:94,9,0
Scaffold_1 286786 . T C 65.9724 PASS DP=3;VDB=0.0588947;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:98,9,0
Scaffold_1 286798 . A G 67.9724 PASS DP=3;VDB=0.0649539;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:100,9,0
Scaffold_1 286801 . C T 59.9723 PASS DP=3;VDB=0.0649539;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:92,9,0
Scaffold_1 286813 . A G 67.9724 PASS DP=3;VDB=0.0649539;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:100,9,0
Scaffold_1 287486 . A C 161.033 PASS DP=8;VDB=0.00610857;SGB=-0.651104;MQSB=1;MQ0F=0.125;AF1=1;AC1=2;DP4=0,0,7,1;MQ=51;FQ=-50.986 GT:PL 1/1:194,24,0
Scaffold_1 287488 . C T 160.033 PASS DP=8;VDB=0.00721959;SGB=-0.651104;MQSB=1;MQ0F=0.125;AF1=1;AC1=2;DP4=0,0,7,1;MQ=51;FQ=-50.986 GT:PL 1/1:193,24,0
Scaffold_1 287492 . A C 130.062 PASS DP=8;VDB=0.00540982;SGB=-0.636426;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.125;AF1=0.50636;AC1=1;DP4=1,0,6,1;MQ=51;FQ=-11.3185;PV4=1,0.367882,1,1 GT:PL 0/1:160,0,16
Scaffold_1 287698 . T C 186.011 PASS DP=13;VDB=0.0963598;SGB=-0.670168;RPB=0.6;MQB=0.9;MQSB=0.760054;BQB=0.6;MQ0F=0.0769231;AF1=0.500199;AC1=1;DP4=0,2,5,5;MQ=42;FQ=5.46595;PV4=0.469697,0.223386,1,0.338041 GT:PL 0/1:216,0,31
Scaffold_1 287704 . G T 188.011 PASS DP=13;VDB=0.0963598;SGB=-0.670168;RPB=0.6;MQB=0.9;MQSB=0.760054;BQB=0.6;MQ0F=0.0769231;AF1=0.500199;AC1=1;DP4=0,2,5,5;MQ=42;FQ=5.46595;PV4=0.469697,0.223386,1,0.338041 GT:PL 0/1:218,0,31
Scaffold_1 287771 . C G 124.014 PASS DP=6;VDB=0.8442;SGB=-0.556411;RPB=1;MQB=1;MQSB=0.666667;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=0,1,2,2;MQ=57;FQ=-3.53091;PV4=1,1,1,0.342519 GT:PL 0/1:154,0,26
Scaffold_1 287795 . A C 124.014 PASS DP=8;VDB=0.8442;SGB=-0.556411;RPB=1;MQB=1;MQSB=0.666667;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=0,1,2,2;MQ=57;FQ=-3.53091;PV4=1,1,1,0.34049 GT:PL 0/1:154,0,26
Scaffold_1 288142 . G A 58.5131 PASS DP=4;VDB=0.0516381;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,4;MQ=51;FQ=-38.9864 GT:PL 1/1:91,12,0
Scaffold_1 289069 . C T 12.272 PASS DP=14;VDB=0.26;SGB=-0.453602;RPB=0.333333;MQB=0.833333;MQSB=0.8618;BQB=0.444444;MQ0F=0.142857;AF1=0.499984;AC1=1;DP4=3,6,2,0;MQ=53;FQ=15.1496;PV4=0.181818,1,1,0.451007 GT:PL 0/1:42,0,169
Scaffold_1 289096 . A G 49.0072 PASS DP=13;VDB=0.764622;SGB=-0.590765;RPB=0.896474;MQB=0.253351;MQSB=0.506703;BQB=0.95494;MQ0F=0;AF1=0.5;AC1=1;DP4=2,5,5,0;MQ=53;FQ=52.0153;PV4=0.0277778,1,0.0147941,0.127491 GT:PL 0/1:79,0,173
Scaffold_1 289188 . A G 89.0077 PASS DP=16;VDB=0.934887;SGB=-0.590765;RPB=0.84246;MQB=1;MQSB=0.97357;BQB=0.989343;MQ0F=0;AF1=0.5;AC1=1;DP4=5,3,4,1;MQ=56;FQ=92.0158;PV4=1,1,0.26933,0.172221 GT:PL 0/1:119,0,206
Scaffold_1 289207 . C T 124.008 PASS DP=18;VDB=0.978989;SGB=-0.636426;RPB=0.720273;MQB=0.97357;MQSB=0.948127;BQB=0.898397;MQ0F=0;AF1=0.5;AC1=1;DP4=5,3,6,1;MQ=57;FQ=127.016;PV4=0.569231,0.479719,0.365257,1 GT:PL 0/1:154,0,200
Scaffold_1 289229 . C T 138.008 PASS DP=17;VDB=0.427859;SGB=-0.636426;RPB=0.428703;MQB=0.925999;MQSB=0.726149;BQB=0.777382;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,5,2;MQ=54;FQ=140.804;PV4=1,0.396775,1,1 GT:PL 0/1:168,0,181
Scaffold_1 289254 . G A 174.009 PASS DP=16;VDB=0.770293;SGB=-0.651104;RPB=0.381255;MQB=0.941512;MQSB=0.941512;BQB=0.720273;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,5,3;MQ=55;FQ=138.016;PV4=0.61927,1,1,0.0436497 GT:PL 0/1:204,0,165
Scaffold_1 289264 . C T 83.0076 PASS DP=15;VDB=0.0157002;SGB=-0.616816;RPB=0.99308;MQB=0.984496;MQSB=0.898397;BQB=0.0621765;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,3,3;MQ=56;FQ=86.0157;PV4=1,0.004079,1,1 GT:PL 0/1:113,0,205
Scaffold_1 289282 . C G 140.008 PASS DP=16;VDB=0.103091;SGB=-0.636426;RPB=0.987474;MQB=0.9986;MQSB=0.809155;BQB=0.789232;MQ0F=0;AF1=0.5;AC1=1;DP4=3,6,3,4;MQ=57;FQ=142.973;PV4=1,1,1,1 GT:PL 0/1:170,0,190
Scaffold_1 289295 . T G 154.008 PASS DP=16;VDB=0.0498124;SGB=-0.651104;RPB=0.763211;MQB=0.702619;MQSB=0.851779;BQB=0.607926;MQ0F=0;AF1=0.5;AC1=1;DP4=2,6,3,5;MQ=57;FQ=138.948;PV4=1,1,0.0782642,1 GT:PL 0/1:184,0,166
Scaffold_1 289323 . G T 121.008 PASS DP=17;VDB=0.702808;SGB=-0.636426;RPB=0.444739;MQB=0.898397;MQSB=0.976835;BQB=0.845852;MQ0F=0;AF1=0.5;AC1=1;DP4=0,8,3,4;MQ=58;FQ=121.006;PV4=0.0769231,0.251108,0.150968,0.426746 GT:PL 0/1:151,0,151
Scaffold_1 289554 . C G 205.009 PASS DP=16;VDB=0.437652;SGB=-0.662043;RPB=0.606531;MQB=1;MQSB=0.966012;BQB=0.945959;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,5,4;MQ=60;FQ=114.016;PV4=1,0.239133,1,0.280489 GT:PL 0/1:235,0,141
Scaffold_1 289558 . C T 197.009 PASS DP=16;VDB=0.433802;SGB=-0.662043;RPB=0.894839;MQB=1;MQSB=1;BQB=0.868815;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,5,4;MQ=60;FQ=137.016;PV4=1,0.255025,1,0.322484 GT:PL 0/1:227,0,164
Scaffold_1 289657 . C T 105.008 PASS DP=11;VDB=0.636041;SGB=-0.590765;RPB=0.891517;MQB=0.950952;MQSB=0.964642;BQB=0.950952;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,2;MQ=60;FQ=107.804;PV4=1,1,1,1 GT:PL 0/1:135,0,148
Scaffold_1 289954 . A G 41.0074 PASS DP=11;VDB=0.681436;SGB=-0.511536;RPB=0.916482;MQB=0.733186;MQSB=0.783809;BQB=0.916482;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,2,1;MQ=59;FQ=44.0154;PV4=1,0.448573,0.0664005,1 GT:PL 0/1:71,0,179
Scaffold_1 290031 . T C 90.0077 PASS DP=10;VDB=0.211317;SGB=-0.556411;RPB=0.730948;MQB=0.0812164;MQSB=0.809011;BQB=0.89338;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,2,2;MQ=52;FQ=93.0089;PV4=0.52381,0.364194,6.18677e-05,1 GT:PL 0/1:120,0,148
Scaffold_1 290273 . A G 73.0076 PASS DP=8;VDB=0.255054;SGB=-0.556411;RPB=0.5;MQB=0.375;MQSB=1;BQB=0.25;MQ0F=0;AF1=0.50002;AC1=1;DP4=1,1,0,4;MQ=50;FQ=14.1838;PV4=0.333333,1,0.097569,1 GT:PL 0/1:103,0,41
Scaffold_1 290650 . G T 31.0104 PASS DP=4;VDB=0.22;SGB=-0.453602;RPB=0;MQB=0;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=47;FQ=31.8934;PV4=1,1,0.0688417,1 GT:PL 0/1:61,0,63
Scaffold_1 310569 . C T 27.0155 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;BQB=0;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,0,2,0;MQ=46;FQ=30.0166;PV4=1,1,0.131108,1 GT:PL 0/1:57,0,89
Scaffold_1 339167 . C A 13.2188 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.888889;MQB=1;MQSB=1;BQB=0.777778;MQ0F=0;AF1=0.499987;AC1=1;DP4=3,6,0,2;MQ=60;FQ=16.1222;PV4=1,1,1,1 GT:PL 0/1:43,0,229
Scaffold_1 344558 . G A 29.0123 PASS DP=4;VDB=0.52;SGB=-0.453602;RPB=0;MQB=0;MQSB=0;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,2,0;MQ=51;FQ=30.5634;PV4=0.333333,0.211325,0.00137931,1 GT:PL 0/1:59,0,63
Scaffold_1 344606 . G A 25.0205 PASS DP=4;VDB=0.52;SGB=-0.453602;RPB=0;MQB=0;BQB=0.5;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,0,2,0;MQ=51;FQ=27.384;PV4=1,0.211325,0.00137931,1 GT:PL 0/1:55,0,63
Scaffold_1 344839 . C T 29.0123 PASS DP=5;VDB=0.36;SGB=-0.453602;RPB=0.666667;MQB=0.333333;MQSB=0.333333;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,0,2;MQ=49;FQ=32.0134;PV4=0.1,1,0.109551,1 GT:PL 0/1:59,0,89
Scaffold_1 344850 . C T 29.0123 PASS DP=6;VDB=0.36;SGB=-0.453602;RPB=0.666667;MQB=0.333333;MQSB=0.333333;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,0,2;MQ=49;FQ=32.0134;PV4=0.1,0.247513,0.109551,1 GT:PL 0/1:59,0,89
Scaffold_1 344872 . G T 21.0411 PASS DP=7;VDB=0.32;SGB=-0.453602;RPB=0.4;MQB=0;MQSB=0.6;BQB=0.8;MQ0F=0;AF1=0.499998;AC1=1;DP4=2,3,0,2;MQ=55;FQ=24.0321;PV4=1,0.476237,0,1 GT:PL 0/1:51,0,152
Scaffold_1 344884 . G A 20.0499 PASS DP=8;VDB=0.32;SGB=-0.453602;RPB=0.333333;MQB=0;MQSB=0.750668;BQB=0.333333;MQ0F=0;AF1=0.499997;AC1=1;DP4=3,3,0,2;MQ=56;FQ=23.0366;PV4=0.464286,1,0,1 GT:PL 0/1:50,0,160
Scaffold_1 370422 . C T 62.9723 PASS DP=4;VDB=0.539554;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,1;MQ=43;FQ=-35.9869 GT:PL 1/1:95,9,0
Scaffold_1 371830 . T G 54.0072 PASS DP=8;VDB=0.259298;SGB=-0.511536;RPB=0.202566;MQB=0.202566;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=36;FQ=42.8459;PV4=1,1,1,0.0312672 GT:PL 0/1:84,0,70
Scaffold_1 371835 . G A 37.0079 PASS DP=8;VDB=0.131345;SGB=-0.556411;RPB=0.248092;MQB=0.124046;MQSB=0.833333;BQB=0.992367;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=38;FQ=40.0156;PV4=1,0.234562,0.0150099,1 GT:PL 0/1:67,0,119
Scaffold_1 371847 . G A 49.0072 PASS DP=9;VDB=0.324419;SGB=-0.590765;RPB=0.649731;MQB=0.0812164;MQSB=0.857143;BQB=0.974597;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,4,1;MQ=37;FQ=52.0126;PV4=1,0.376622,0.00655523,0.2837 GT:PL 0/1:79,0,111
Scaffold_1 371849 . C A 44.0073 PASS DP=9;VDB=0.328499;SGB=-0.590765;RPB=0.450401;MQB=0.150134;MQSB=1;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=34;FQ=46.3764;PV4=1,0.122523,0.0193819,0.261025 GT:PL 0/1:74,0,82
Scaffold_1 371881 . T G 80.0075 PASS DP=11;VDB=0.427066;SGB=-0.590765;RPB=0.904729;MQB=0.238087;MQSB=0.75;BQB=0.523791;MQ0F=0.181818;AF1=0.5;AC1=1;DP4=4,1,4,1;MQ=35;FQ=48.014;PV4=1,1,1,1 GT:PL 0/1:110,0,75
Scaffold_1 371896 . T C 44.0073 PASS DP=10;VDB=0.86066;SGB=-0.590765;RPB=0.974597;MQB=0.0812164;MQSB=0.857143;BQB=0.974597;MQ0F=0.2;AF1=0.5;AC1=1;DP4=3,1,4,1;MQ=37;FQ=47.0126;PV4=1,1,0.00977723,0.127953 GT:PL 0/1:74,0,106
Scaffold_1 371905 . T G 27.0155 PASS DP=9;VDB=0.803107;SGB=-0.556411;RPB=0.868321;MQB=0.62023;BQB=0.868321;MQ0F=0.222222;AF1=0.499999;AC1=1;DP4=4,0,4,0;MQ=33;FQ=30.0107;PV4=1,0.379069,0.255885,0.0669873 GT:PL 0/1:57,0,84
Scaffold_1 372071 . C T 25.4672 PASS DP=5;VDB=0.0729503;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0.4;AF1=1;AC1=2;DP4=0,1,0,4;MQ=25;FQ=-33.9875;PV4=1,0.418097,1,1 GT:PL 1/1:57,7,0
Scaffold_1 372081 . G A 28.0138 PASS DP=7;VDB=0.0729503;SGB=-0.556411;RPB=0.202566;MQB=0.810265;BQB=0.607698;MQ0F=0.428571;AF1=0.500006;AC1=1;DP4=0,3,0,4;MQ=29;FQ=18.8067;PV4=1,1,0.411427,1 GT:PL 0/1:58,0,46
Scaffold_1 372188 . C A 15.1417 PASS DP=10;VDB=0.0320192;SGB=-0.556411;RPB=0.895781;MQB=0.503877;MQSB=0;BQB=0.503877;MQ0F=0.4;AF1=0.499992;AC1=1;DP4=2,4,0,4;MQ=36;FQ=18.0829;PV4=0.466667,0.0452352,0.185586,1 GT:PL 0/1:45,0,124
Scaffold_1 372209 . C G 17.0924 PASS DP=9;VDB=0.0320192;SGB=-0.556411;RPB=0.487298;MQB=0.243649;MQSB=0.115573;BQB=0.89338;MQ0F=0.333333;AF1=0.499995;AC1=1;DP4=3,2,0,4;MQ=41;FQ=20.058;PV4=0.166667,1,0.0748313,0.42407 GT:PL 0/1:47,0,118
Scaffold_1 373438 . C T 146.461 PASS DP=11;VDB=0.986231;SGB=-0.616816;RPB=1;MQB=1;MQSB=0.8;BQB=1;MQ0F=0;AF1=0.829413;AC1=1;DP4=1,0,4,2;MQ=39;FQ=-25.9966;PV4=1,1,1,0.146077 GT:PL 0/1:175,0,1
Scaffold_1 373440 . G T 146.797 PASS DP=11;VDB=0.976615;SGB=-0.590765;RPB=1;MQB=1;MQSB=0.5;BQB=1;MQ0F=0;AF1=0.624261;AC1=1;DP4=1,0,3,2;MQ=42;FQ=-23.0074;PV4=1,1,1,0.0889039 GT:PL 0/1:176,0,4
Scaffold_1 373464 . G A 97.062 PASS DP=10;VDB=0.0229453;SGB=-0.616816;RPB=0;MQB=0.333333;MQSB=0.150134;BQB=0;MQ0F=0;AF1=0.50636;AC1=1;DP4=2,0,1,5;MQ=36;FQ=-11.3185;PV4=0.107143,0.000486305,1,1 GT:PL 0/1:127,0,16
Scaffold_1 373494 . G A 97.062 PASS DP=8;VDB=0.0229453;SGB=-0.616816;RPB=0;MQB=0.333333;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.50636;AC1=1;DP4=0,2,1,5;MQ=36;FQ=-11.3185;PV4=1,0.199869,1,1 GT:PL 0/1:127,0,16
Scaffold_1 373538 . G A 64.0346 PASS DP=8;VDB=0.834014;SGB=-0.590765;RPB=0.4;MQB=0;BQB=0.4;MQ0F=0;AF1=0.503167;AC1=1;DP4=0,2,0,5;MQ=42;FQ=-8.62639;PV4=1,0.103968,1,0.0711772 GT:PL 0/1:94,0,19
Scaffold_1 373952 . G A 27.9788 PASS DP=3;VDB=0.748679;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,1;MQ=25;FQ=-35.9869 GT:PL 1/1:60,9,0
Scaffold_1 376117 . G T 42.0073 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1.01283;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,2,0;MQ=60;FQ=45.0154;PV4=0.428571,1,1,0.0111079 GT:PL 0/1:72,0,159
Scaffold_1 376644 . C T 33.0091 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,2;MQ=60;FQ=34.2524;PV4=1,1,1,1 GT:PL 0/1:63,0,66
Scaffold_1 380088 . C A 58.0073 PASS DP=8;VDB=0.0058656;SGB=-0.556411;RPB=0.992367;MQB=0.992367;MQSB=1;BQB=0.62023;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,0,4;MQ=60;FQ=60.9982;PV4=1,0.254708,1,1 GT:PL 0/1:88,0,112
Scaffold_1 391609 . G A 78.0075 PASS DP=9;VDB=0.202231;SGB=-0.556411;RPB=0.0812164;MQB=0.243649;MQSB=0.649731;BQB=0.89338;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=3,2,2,2;MQ=34;FQ=49.0126;PV4=1,1,1,1 GT:PL 0/1:108,0,76
Scaffold_1 391694 . C A 129.264 PASS DP=6;VDB=0.0815962;SGB=-0.590765;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,4;MQ=49;FQ=-41.9862 GT:PL 1/1:162,15,0
Scaffold_1 393198 . T G 31.0155 PASS DP=3;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.333333;AF1=1;AC1=2;DP4=0,1,2,0;MQ=31;FQ=-29.9901;PV4=0.333333,0,1,0.0128147 GT:PL 1/1:61,3,0
Scaffold_1 393246 . T A 61.1254 PASS DP=4;VDB=0.0349627;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.25;AF1=1;AC1=2;DP4=0,1,3,0;MQ=34;FQ=-31.9885;PV4=0.25,1,1,1 GT:PL 1/1:92,5,0
Scaffold_1 393258 . G A 61.1254 PASS DP=5;VDB=0.0349627;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.2;AF1=1;AC1=2;DP4=0,1,3,0;MQ=34;FQ=-31.9885;PV4=0.25,1,1,1 GT:PL 1/1:92,5,0
Scaffold_1 393263 . C T 78.193 PASS DP=5;VDB=0.292086;SGB=-0.556411;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.2;AF1=1;AC1=2;DP4=0,1,4,0;MQ=40;FQ=-34.9872;PV4=0.2,1,1,1 GT:PL 1/1:110,8,0
Scaffold_1 394067 . G C 155.134 PASS DP=6;VDB=0.9708;SGB=-0.616816;MQSB=0.625;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,2;MQ=58;FQ=-44.9861 GT:PL 1/1:188,18,0
Scaffold_1 394073 . C T 115.264 PASS DP=6;VDB=0.610267;SGB=-0.590765;MQSB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,3;MQ=57;FQ=-41.9862 GT:PL 1/1:148,15,0
Scaffold_1 394145 . C T 133.133 PASS DP=6;VDB=0.82691;SGB=-0.616816;MQSB=0.574341;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,3;MQ=51;FQ=-44.9861 GT:PL 1/1:166,18,0
Scaffold_1 394151 . T C 119.264 PASS DP=6;VDB=0.807392;SGB=-0.590765;MQSB=0.666667;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,3;MQ=49;FQ=-41.9862 GT:PL 1/1:152,15,0
Scaffold_1 394176 . T A 115.514 PASS DP=4;VDB=0.658104;SGB=-0.556411;MQSB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,2;MQ=49;FQ=-38.9864 GT:PL 1/1:148,12,0
Scaffold_1 394179 . G T 101.514 PASS DP=4;VDB=0.658104;SGB=-0.556411;MQSB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,2;MQ=49;FQ=-38.9864 GT:PL 1/1:134,12,0
Scaffold_1 394191 . A C 112.514 PASS DP=4;VDB=0.658104;SGB=-0.556411;MQSB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,2;MQ=49;FQ=-38.9864 GT:PL 1/1:145,12,0
Scaffold_1 394222 . T C 67.9724 PASS DP=3;VDB=0.756524;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,2;MQ=41;FQ=-35.9869 GT:PL 1/1:100,9,0
Scaffold_1 394240 . T C 88.5135 PASS DP=4;VDB=0.851686;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,3;MQ=43;FQ=-38.9864 GT:PL 1/1:121,12,0
Scaffold_1 394250 . C T 82.5134 PASS DP=4;VDB=0.836469;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,3;MQ=43;FQ=-38.9864 GT:PL 1/1:115,12,0
Scaffold_1 394252 . A C 91.5135 PASS DP=4;VDB=0.851686;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,3;MQ=43;FQ=-38.9864 GT:PL 1/1:124,12,0
Scaffold_1 394348 . C T 111.264 PASS DP=5;VDB=0.597187;SGB=-0.590765;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,5;MQ=52;FQ=-41.9862 GT:PL 1/1:144,15,0
Scaffold_1 394353 . C T 111.264 PASS DP=5;VDB=0.60592;SGB=-0.590765;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,5;MQ=52;FQ=-41.9862 GT:PL 1/1:144,15,0
Scaffold_1 394381 . G A 60.9723 PASS DP=3;VDB=0.292464;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,3;MQ=56;FQ=-35.9869 GT:PL 1/1:93,9,0
Scaffold_1 394403 . C G 63.9723 PASS DP=3;VDB=0.301053;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,3;MQ=56;FQ=-35.9869 GT:PL 1/1:96,9,0
Scaffold_1 394421 . C T 43.7647 PASS DP=2;VDB=0.36;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=54;FQ=-32.988 GT:PL 1/1:75,6,0
Scaffold_1 394514 . G A 19.0627 PASS DP=3;VDB=0.32;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500196;AC1=1;DP4=1,0,2,0;MQ=41;FQ=5.41717;PV4=1,0.333333,0.493664,1 GT:PL 0/1:49,0,31
Scaffold_1 394537 . G C 25.7758 PASS DP=2;VDB=0.32;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=42;FQ=-32.988 GT:PL 1/1:57,6,0
Scaffold_1 394592 . T C 20.0839 PASS DP=3;VDB=0.18;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.503991;AC1=1;DP4=1,0,2,0;MQ=41;FQ=-9.50452;PV4=1,1,0.184433,0.447961 GT:PL 0/1:50,0,18
Scaffold_1 394599 . C T 27.7716 PASS DP=3;VDB=0.18;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=33;FQ=-32.988 GT:PL 1/1:59,6,0
Scaffold_1 394927 . T A 20.0499 PASS DP=11;VDB=0.654404;SGB=-0.511536;RPB=0.916482;MQB=0.916482;MQSB=0.904729;BQB=0.916482;MQ0F=0.0909091;AF1=0.499997;AC1=1;DP4=4,3,1,2;MQ=34;FQ=23.0366;PV4=1,0.486016,0.490388,0.328423 GT:PL 0/1:50,0,150
Scaffold_1 394953 . C G 10.42 PASS DP=10;VDB=0.286646;SGB=-0.556411;RPB=0.727822;MQB=0.335918;MQSB=0.727822;BQB=0.727822;MQ0F=0.2;AF1=0.499975;AC1=1;DP4=2,4,2,2;MQ=30;FQ=13.2265;PV4=1,1,0.0838113,0.120752 GT:PL 0/1:40,0,133
Scaffold_1 394977 . C G 10.42 PASS DP=11;VDB=0.286646;SGB=-0.556411;RPB=0.559863;MQB=0.335918;MQSB=0.727822;BQB=1.00775;MQ0F=0.181818;AF1=0.499975;AC1=1;DP4=2,4,2,2;MQ=30;FQ=13.2265;PV4=1,0.350635,0.0838113,1 GT:PL 0/1:40,0,133
Scaffold_1 395048 . C T 29.0124 PASS DP=8;VDB=0.732596;SGB=-0.511536;RPB=1.01283;MQB=0.607698;MQSB=1;BQB=0.810265;MQ0F=0.25;AF1=0.500008;AC1=1;DP4=1,3,0,3;MQ=27;FQ=17.9161;PV4=1,1,1,1 GT:PL 0/1:59,0,45
Scaffold_1 395385 . C T 35.4607 PASS DP=3;VDB=0.06;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.829413;AC1=1;DP4=1,0,2,0;MQ=33;FQ=-25.9966;PV4=1,1,1,0.149975 GT:PL 0/1:64,0,1
Scaffold_1 395394 . T A 51.1276 PASS DP=4;VDB=0.0900131;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=1,0,3,0;MQ=31;FQ=-27.9926;PV4=1,0.333333,1,0.310093 GT:PL 1/1:80,1,0
Scaffold_1 395421 . A G 49.1276 PASS DP=5;VDB=0.0860477;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=1,0,3,0;MQ=31;FQ=-27.9926;PV4=1,0.333333,1,1 GT:PL 1/1:78,1,0
Scaffold_1 395503 . C T 53.1147 PASS DP=6;VDB=0.686815;SGB=-0.556411;RPB=0.5;MQB=0.25;MQSB=0.25;BQB=0.5;MQ0F=0;AF1=0.512852;AC1=1;DP4=0,2,4,0;MQ=28;FQ=-14.1556;PV4=0.0666667,1,1,0.170025 GT:PL 0/1:83,0,13
Scaffold_1 395519 . A G 10.4448 PASS DP=5;VDB=0.58;SGB=-0.453602;RPB=0;MQB=0.5;MQSB=1;BQB=0;MQ0F=0;AF1=0.503142;AC1=1;DP4=0,2,1,1;MQ=31;FQ=-8.65605;PV4=1,0.042156,1,0.211325 GT:PL 0/1:40,0,19
Scaffold_1 397042 . A T 40.5407 PASS DP=9;VDB=0.07183;SGB=-0.590765;RPB=0.89338;MQB=0.162433;MQSB=0.115573;BQB=0.406082;MQ0F=0.555556;AF1=1;AC1=2;DP4=0,4,3,2;MQ=21;FQ=-30.9892;PV4=0.166667,0.0677017,1,0.366505 GT:PL 1/1:71,4,0
Scaffold_1 397225 . T C 46.2191 PASS DP=4;VDB=0.0295886;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.526316;AC1=1;DP4=0,1,0,3;MQ=36;FQ=-17.0717;PV4=1,0.333333,1,1 GT:PL 0/1:76,0,10
Scaffold_1 397228 . T A 18.075 PASS DP=4;VDB=0.06;SGB=-0.453602;RPB=0;MQB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=36;FQ=18.0728;PV4=1,1,0.489386,1 GT:PL 0/1:48,0,48
Scaffold_1 397229 . C T 46.2191 PASS DP=4;VDB=0.0279572;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.526316;AC1=1;DP4=0,1,0,3;MQ=36;FQ=-17.0717;PV4=1,1,1,1 GT:PL 0/1:76,0,10
Scaffold_1 398897 . T C 54.5131 PASS DP=4;VDB=0.0117389;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=30;FQ=-38.9864 GT:PL 1/1:87,12,0
Scaffold_1 398925 . C T 18.0749 PASS DP=10;VDB=0.0207102;SGB=-0.590765;RPB=0.89338;MQB=0.730948;MQSB=1;BQB=0.649731;MQ0F=0.3;AF1=0.499996;AC1=1;DP4=4,0,4,1;MQ=25;FQ=20.7856;PV4=1,0.11903,0.258689,0.385863 GT:PL 0/1:48,0,60
Scaffold_1 399233 . G A 11.3582 PASS DP=18;VDB=0.0157002;SGB=-0.616816;RPB=0.569783;MQB=0.840624;MQSB=0.934728;BQB=0.984496;MQ0F=0.722222;AF1=0.502493;AC1=1;DP4=5,4,0,6;MQ=17;FQ=-7.80664;PV4=0.043956,0.315334,1,1 GT:PL 0/1:41,0,20
Scaffold_1 405399 . G T 34.1291 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0;MQ0F=0.25;AF1=1;AC1=2;DP4=1,1,2,0;MQ=28;FQ=-27.9926;PV4=1,1,1,1 GT:PL 1/1:63,1,0
Scaffold_1 405429 . C T 34.1291 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0;MQ0F=0.25;AF1=1;AC1=2;DP4=1,1,2,0;MQ=28;FQ=-27.9926;PV4=1,1,1,1 GT:PL 1/1:63,1,0
Scaffold_1 405445 . G A 34.1291 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0;MQ0F=0.25;AF1=1;AC1=2;DP4=1,1,2,0;MQ=28;FQ=-27.9926;PV4=1,1,1,1 GT:PL 1/1:63,1,0
Scaffold_1 405497 . C T 34.1291 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=1;MQB=0;MQSB=1;BQB=0.5;MQ0F=0.285714;AF1=1;AC1=2;DP4=1,1,2,0;MQ=28;FQ=-27.9926;PV4=1,1,1,1 GT:PL 1/1:63,1,0
Scaffold_1 405562 . A C 39.0127 PASS DP=3;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0.333333;AF1=1;AC1=2;DP4=0,1,0,2;MQ=47;FQ=-29.9901;PV4=1,1,1,1 GT:PL 1/1:69,3,0
Scaffold_1 406645 . T C 54.1253 PASS DP=4;VDB=0.301053;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0.25;AF1=1;AC1=2;DP4=1,0,3,0;MQ=35;FQ=-31.9885;PV4=1,1,1,1 GT:PL 1/1:85,5,0
Scaffold_1 406690 . T C 74.0075 PASS DP=7;VDB=0.459448;SGB=-0.556411;RPB=1.01283;MQB=0.405132;MQSB=1;BQB=0.810265;MQ0F=0.142857;AF1=0.500003;AC1=1;DP4=2,1,4,0;MQ=39;FQ=23.0366;PV4=0.428571,1,1,1 GT:PL 0/1:104,0,50
Scaffold_1 406747 . A G 12.272 PASS DP=10;VDB=0.64;SGB=-0.453602;RPB=1;MQB=1;MQSB=0.0916482;BQB=0.9375;MQ0F=0.3;AF1=0.499984;AC1=1;DP4=5,3,2,0;MQ=36;FQ=15.1496;PV4=1,1,1,1 GT:PL 0/1:42,0,115
Scaffold_1 406778 . G A 18.0749 PASS DP=11;VDB=0.559209;SGB=-0.511536;RPB=0.641538;MQB=0.641538;MQSB=0.0559863;BQB=0.916482;MQ0F=0.272727;AF1=0.499996;AC1=1;DP4=4,3,2,1;MQ=34;FQ=21.0491;PV4=1,0.458512,1,1 GT:PL 0/1:48,0,102
Scaffold_1 406780 . G A 59.0073 PASS DP=11;VDB=0.842333;SGB=-0.590765;RPB=0.523791;MQB=0.857112;MQSB=0.0559863;BQB=0.428556;MQ0F=0.272727;AF1=0.500003;AC1=1;DP4=2,3,4,1;MQ=34;FQ=23.036;PV4=0.52381,0.0723299,1,0.0342093 GT:PL 0/1:89,0,50
Scaffold_1 406800 . T C 10.42 PASS DP=10;VDB=0.0714862;SGB=-0.511536;RPB=0.115573;MQB=0.924584;MQSB=0.0812164;BQB=0.809011;MQ0F=0.3;AF1=0.499975;AC1=1;DP4=3,3,2,1;MQ=34;FQ=13.2134;PV4=1,0.163415,1,1 GT:PL 0/1:40,0,65
Scaffold_1 406816 . G A 13.2188 PASS DP=11;VDB=0.440791;SGB=-0.511536;RPB=0.300267;MQB=0.900802;MQSB=0.124046;BQB=0.300267;MQ0F=0.272727;AF1=0.499995;AC1=1;DP4=2,3,2,1;MQ=32;FQ=14.0642;PV4=1,0.0606995,1,1 GT:PL 0/1:43,0,45
Scaffold_1 407121 . T A 45.0072 PASS DP=5;VDB=0.327477;SGB=-0.511536;RPB=0.333333;MQB=0;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,0,3;MQ=49;FQ=29.9511;PV4=1,0.319069,9.65895e-05,1 GT:PL 0/1:75,0,57
Scaffold_1 407145 . T A 33.0091 PASS DP=6;VDB=0.52;SGB=-0.453602;RPB=0.5;MQB=0.75;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=46;FQ=33.0069;PV4=1,1,0.232503,1 GT:PL 0/1:63,0,63
Scaffold_1 407188 . T A 58.0073 PASS DP=5;VDB=0.617121;SGB=-0.511536;RPB=0.166667;MQB=0.333333;BQB=0.5;MQ0F=0;AF1=0.500006;AC1=1;DP4=0,2,0,3;MQ=38;FQ=19.0688;PV4=1,1,1,0.247513 GT:PL 0/1:88,0,46
Scaffold_1 407194 . C T 99.2638 PASS DP=5;VDB=0.724679;SGB=-0.590765;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,5;MQ=38;FQ=-41.9862 GT:PL 1/1:132,15,0
Scaffold_1 407200 . C T 52.0073 PASS DP=5;VDB=0.617121;SGB=-0.511536;RPB=0.166667;MQB=0.333333;BQB=0.666667;MQ0F=0;AF1=0.500006;AC1=1;DP4=0,2,0,3;MQ=38;FQ=19.068;PV4=1,0.247513,1,0.119721 GT:PL 0/1:82,0,46
Scaffold_1 407209 . C T 37.0079 PASS DP=5;VDB=0.617121;SGB=-0.511536;RPB=0.166667;MQB=0.333333;BQB=0.833333;MQ0F=0;AF1=0.500006;AC1=1;DP4=0,2,0,3;MQ=38;FQ=19.0351;PV4=1,0.325164,1,0.113072 GT:PL 0/1:67,0,46
Scaffold_1 407269 . C T 19.0627 PASS DP=3;VDB=0.26;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500196;AC1=1;DP4=0,1,0,2;MQ=36;FQ=5.41717;PV4=1,0.333333,0.333333,1 GT:PL 0/1:49,0,31
Scaffold_1 407628 . C T 24.9856 PASS DP=3;VDB=0.220755;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=24;FQ=-35.9869 GT:PL 1/1:57,9,0
Scaffold_1 407652 . G A 24.9856 PASS DP=3;VDB=0.220755;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=24;FQ=-35.9869 GT:PL 1/1:57,9,0
Scaffold_1 407653 . G A 24.9856 PASS DP=3;VDB=0.220755;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=24;FQ=-35.9869 GT:PL 1/1:57,9,0
Scaffold_1 407781 . T C 22.0341 PASS DP=5;VDB=0.56;SGB=-0.453602;RPB=0.333333;MQB=0.666667;BQB=0.5;MQ0F=0;AF1=0.499998;AC1=1;DP4=3,0,2,0;MQ=45;FQ=25.0275;PV4=1,0.136114,1,0.136114 GT:PL 0/1:52,0,88
Scaffold_1 407849 . C T 75.0075 PASS DP=6;VDB=0.378793;SGB=-0.556411;RPB=0.25;MQB=0.5;MQSB=0.574341;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,1,3;MQ=42;FQ=30.0193;PV4=0.4,0.270735,0.104639,1 GT:PL 0/1:105,0,57
Scaffold_1 407906 . C T 75.0183 PASS DP=6;VDB=0.413797;SGB=-0.590765;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.501256;AC1=1;DP4=1,0,0,5;MQ=43;FQ=-5.445;PV4=0.166667,0.352,0.0876171,1 GT:PL 0/1:105,0,23
Scaffold_1 407995 . C T 52.0072 PASS DP=5;VDB=0.411594;SGB=-0.511536;RPB=0.333333;MQB=0.666667;BQB=0;MQ0F=0;AF1=0.500003;AC1=1;DP4=0,2,0,3;MQ=50;FQ=22.04;PV4=1,1,0.423206,0.247513 GT:PL 0/1:82,0,49
Scaffold_1 408003 . C G 33.0091 PASS DP=5;VDB=0.26;SGB=-0.453602;RPB=0.5;MQB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,0,2;MQ=54;FQ=31.2539;PV4=1,1,1,1 GT:PL 0/1:63,0,60
Scaffold_1 408361 . G A 30.0116 PASS DP=4;VDB=0.76;SGB=-0.453602;RPB=1;MQB=0;BQB=0.75;MQ0F=0;AF1=0.500039;AC1=1;DP4=2,0,2,0;MQ=47;FQ=11.3204;PV4=1,1,1,1 GT:PL 0/1:60,0,38
Scaffold_1 408466 . C T 17.8363 PASS DP=4;VDB=0.02;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=27;FQ=-32.988 GT:PL 1/1:49,6,0
Scaffold_1 408621 . C G 104.514 PASS DP=5;VDB=0.27062;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=57;FQ=-38.9864 GT:PL 1/1:137,12,0
Scaffold_1 408833 . G A 46.7647 PASS DP=3;VDB=0.96;SGB=-0.453602;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,1;MQ=60;FQ=-32.988 GT:PL 1/1:78,6,0
Scaffold_1 409121 . T C 91.5135 PASS DP=5;VDB=0.865924;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=57;FQ=-38.9864 GT:PL 1/1:124,12,0
Scaffold_1 416673 . G T 44.0073 PASS DP=8;VDB=0.0221621;SGB=-0.511536;RPB=0.202566;MQB=1.01283;MQSB=1;BQB=1.01283;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=60;FQ=47.0132;PV4=1,1,1,0.0183713 GT:PL 0/1:74,0,107
Scaffold_1 423118 . G T 19.061 PASS DP=12;VDB=0.32;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.888889;MQ0F=0;AF1=0.499997;AC1=1;DP4=8,1,1,1;MQ=60;FQ=22.0421;PV4=0.345455,0.433638,1,1 GT:PL 0/1:49,0,210
Scaffold_1 424555 . C A 10.42 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.444444;MQB=1;MQSB=0.964642;BQB=1;MQ0F=0;AF1=0.499975;AC1=1;DP4=5,4,2,0;MQ=60;FQ=13.2265;PV4=0.490909,1,1,1 GT:PL 0/1:40,0,228
Scaffold_1 435952 . G T 19.061 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0.571429;MQB=1;MQSB=0.974597;BQB=0.714286;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,3,0,2;MQ=60;FQ=22.0421;PV4=0.444444,1,1,1 GT:PL 0/1:49,0,197
Scaffold_1 441746 . G C 129.264 PASS DP=7;VDB=0.444886;SGB=-0.590765;MQSB=0.833333;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,3;MQ=48;FQ=-41.9862 GT:PL 1/1:162,15,0
Scaffold_1 441761 . A C 129.264 PASS DP=6;VDB=0.597187;SGB=-0.590765;MQSB=0.833333;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,2;MQ=44;FQ=-41.9862 GT:PL 1/1:162,15,0
Scaffold_1 441803 . A G 139.134 PASS DP=7;VDB=0.688859;SGB=-0.616816;MQSB=0.375;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,4;MQ=39;FQ=-44.9861 GT:PL 1/1:172,18,0
Scaffold_1 441807 . T A 139.134 PASS DP=7;VDB=0.688859;SGB=-0.616816;MQSB=0.375;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,4;MQ=39;FQ=-44.9861 GT:PL 1/1:172,18,0
Scaffold_1 441813 . A C 125.264 PASS DP=8;VDB=0.648709;SGB=-0.590765;MQSB=0.333333;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,3;MQ=39;FQ=-41.9862 GT:PL 1/1:158,15,0
Scaffold_1 441823 . C T 154.067 PASS DP=7;VDB=0.513814;SGB=-0.636426;MQSB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,5;MQ=43;FQ=-47.986 GT:PL 1/1:187,21,0
Scaffold_1 441841 . A T 180.067 PASS DP=7;VDB=0.459196;SGB=-0.636426;MQSB=0.405132;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,4;MQ=45;FQ=-47.986 GT:PL 1/1:213,21,0
Scaffold_1 454268 . A G 25.0205 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.8;MQB=1;MQSB=1.01283;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=4,1,0,2;MQ=60;FQ=28.0219;PV4=0.142857,1,1,1 GT:PL 0/1:55,0,147
Scaffold_1 454289 . C A 19.061 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0.285714;MQB=1;MQSB=0.974597;BQB=0.571429;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,3,0,2;MQ=60;FQ=22.0421;PV4=0.444444,1,1,1 GT:PL 0/1:49,0,183
Scaffold_1 463555 . T G 23.0285 PASS DP=12;VDB=0.275636;SGB=-0.511536;RPB=0.979382;MQB=0.0497871;MQSB=0.8618;BQB=0.829029;MQ0F=0;AF1=0.499999;AC1=1;DP4=4,4,2,1;MQ=54;FQ=26.0258;PV4=1,1,5.54241e-05,1 GT:PL 0/1:53,0,215
Scaffold_1 463561 . G A 17.0924 PASS DP=13;VDB=0.275636;SGB=-0.511536;RPB=0.996435;MQB=0.040184;MQSB=0.777113;BQB=0.447727;MQ0F=0;AF1=0.499995;AC1=1;DP4=4,6,2,1;MQ=55;FQ=20.058;PV4=0.559441,1,6.83622e-06,1 GT:PL 0/1:47,0,234
Scaffold_1 463652 . A G 15.1417 PASS DP=12;VDB=0.1;SGB=-0.453602;RPB=0.1875;MQB=0;MQSB=0.5625;BQB=0.9375;MQ0F=0;AF1=0.499992;AC1=1;DP4=1,7,1,1;MQ=56;FQ=18.0829;PV4=0.377778,1,7.33807e-09,0.45519 GT:PL 0/1:45,0,179
Scaffold_1 468518 . G T 22.0341 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.499998;AC1=1;DP4=1,1,0,2;MQ=60;FQ=24.8596;PV4=1,0.281574,1,0.00829551 GT:PL 0/1:52,0,66
Scaffold_1 530459 . C A 25.0205 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0.2;MQSB=0.6;BQB=0.8;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,0,2;MQ=51;FQ=28.0219;PV4=1,1,1,1 GT:PL 0/1:55,0,145
Scaffold_1 530843 . T G 25.0205 PASS DP=11;VDB=0.38;SGB=-0.453602;RPB=0.5;MQB=0.571429;MQSB=0.649731;BQB=1;MQ0F=0.0909091;AF1=0.499999;AC1=1;DP4=3,4,1,1;MQ=50;FQ=28.0219;PV4=1,0.359281,0.171388,1 GT:PL 0/1:55,0,205
Scaffold_1 531329 . G C 36.0081 PASS DP=7;VDB=0.125998;SGB=-0.590765;RPB=0;MQB=0;MQSB=1;BQB=0.8;MQ0F=0.142857;AF1=0.500001;AC1=1;DP4=0,2,1,4;MQ=38;FQ=24.8596;PV4=1,0.328851,0.00992338,1 GT:PL 0/1:66,0,52
Scaffold_1 531363 . C G 25.0205 PASS DP=9;VDB=0.133161;SGB=-0.590765;RPB=0.150134;MQB=0.150134;MQSB=1;BQB=0.900802;MQ0F=0.111111;AF1=0.499999;AC1=1;DP4=0,3,1,4;MQ=42;FQ=27.9787;PV4=1,1,0.00274459,1 GT:PL 0/1:55,0,75
Scaffold_1 536092 . C A 22.0341 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0.833333;MQB=1;MQSB=0.900802;BQB=0.666667;MQ0F=0;AF1=0.499998;AC1=1;DP4=3,3,0,2;MQ=60;FQ=25.0286;PV4=0.464286,1,1,1 GT:PL 0/1:52,0,175
Scaffold_1 540133 . C A 24.0241 PASS DP=7;VDB=0.1;SGB=-0.453602;RPB=0.75;MQB=0.75;BQB=0.375;MQ0F=0.142857;AF1=0.499999;AC1=1;DP4=4,0,2,0;MQ=55;FQ=26.938;PV4=1,1,1,1 GT:PL 0/1:54,0,71
Scaffold_1 544525 . G C 27.0155 PASS DP=31;VDB=0.329692;SGB=-0.616816;RPB=0.527751;MQB=0.0928125;MQSB=0.290678;BQB=0.940605;MQ0F=0.419355;AF1=0.5;AC1=1;DP4=12,11,5,1;MQ=20;FQ=29.9117;PV4=0.354385,0.208392,1,1 GT:PL 0/1:57,0,73
Scaffold_1 544587 . G A 14.1767 PASS DP=30;VDB=0.159034;SGB=-0.590765;RPB=0.0321815;MQB=0.00930435;MQSB=0.614459;BQB=0.822995;MQ0F=0.466667;AF1=0.500069;AC1=1;DP4=12,10,4,1;MQ=18;FQ=8.21065;PV4=0.618481,1,1,0.0336086 GT:PL 0/1:44,0,35
Scaffold_1 544671 . C T 23.0294 PASS DP=28;VDB=0.218338;SGB=-0.616816;RPB=0.996181;MQB=0.124514;MQSB=0.160885;BQB=0.966147;MQ0F=0.678571;AF1=0.500098;AC1=1;DP4=6,15,2,4;MQ=17;FQ=7.75713;PV4=1,0.182361,1,1 GT:PL 0/1:53,0,34
Scaffold_1 545517 . A C 142.03 PASS DP=12;VDB=0.17748;SGB=-0.636426;RPB=0.916482;MQB=0.0916482;MQSB=0.0559863;BQB=0.733186;MQ0F=0.0833333;AF1=0.502513;AC1=1;DP4=1,2,5,2;MQ=37;FQ=-7.77799;PV4=0.5,0.353109,1,1 GT:PL 0/1:172,0,20
Scaffold_1 545559 . G A 89.0213 PASS DP=7;VDB=0.988087;SGB=-0.590765;RPB=0.8;MQB=0.2;MQSB=0;BQB=0.7;MQ0F=0;AF1=0.501582;AC1=1;DP4=0,2,2,3;MQ=37;FQ=-6.18227;PV4=1,0.223908,1,0.151248 GT:PL 0/1:119,0,22
Scaffold_1 545913 . G A 64.1982 PASS DP=6;VDB=0.60592;SGB=-0.590765;RPB=1;MQB=1;MQSB=0.75;BQB=1;MQ0F=0;AF1=0.730437;AC1=1;DP4=1,0,3,2;MQ=27;FQ=-24.9994;PV4=1,1,1,1 GT:PL 0/1:93,0,2
Scaffold_1 546087 . T A 41.0074 PASS DP=8;VDB=0.192436;SGB=-0.511536;RPB=0.300267;MQB=0.750668;MQSB=1;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,0;MQ=45;FQ=44.0154;PV4=1,1,0.222139,0.0276957 GT:PL 0/1:71,0,141
Scaffold_1 546100 . C G 75.0075 PASS DP=8;VDB=0.720889;SGB=-0.590765;RPB=0.300267;MQB=0.750668;MQSB=1;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,4,1;MQ=45;FQ=44.0136;PV4=1,0.0613088,1,0.240809 GT:PL 0/1:105,0,71
Scaffold_1 546136 . C G 39.0076 PASS DP=9;VDB=0.192436;SGB=-0.511536;RPB=0.809011;MQB=0.462292;MQSB=0.924584;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,3,0;MQ=50;FQ=42.0155;PV4=0.464286,1,0.0687908,1 GT:PL 0/1:69,0,178
Scaffold_1 546149 . G A 39.0076 PASS DP=10;VDB=0.199299;SGB=-0.511536;RPB=0.577865;MQB=0.346719;MQSB=0.89338;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,3,0;MQ=51;FQ=42.0155;PV4=0.166667,0.244102,0.0490456,1 GT:PL 0/1:69,0,172
Scaffold_1 546151 . A C 154.008 PASS DP=12;VDB=0.821768;SGB=-0.636426;RPB=0.733186;MQB=0.366593;MQSB=0.895781;BQB=0.641538;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,3,4;MQ=51;FQ=39.0157;PV4=0.2,0.198491,1,0.156977 GT:PL 0/1:184,0,66
Scaffold_1 546345 . G A 13.2188 PASS DP=14;VDB=0.160332;SGB=-0.511536;RPB=0.505697;MQB=0.505697;MQSB=0.399018;BQB=0.552148;MQ0F=0;AF1=0.499987;AC1=1;DP4=3,8,3,0;MQ=47;FQ=16.1222;PV4=0.0549451,0.213561,0.0944422,1 GT:PL 0/1:43,0,227
Scaffold_1 546368 . G A 21.0411 PASS DP=18;VDB=0.560696;SGB=-0.556411;RPB=0.998399;MQB=0.94394;MQSB=0.286505;BQB=0.156835;MQ0F=0.111111;AF1=0.499998;AC1=1;DP4=8,5,4,0;MQ=36;FQ=24.0321;PV4=0.260504,0.119456,0.47538,1 GT:PL 0/1:51,0,233
Scaffold_1 546374 . G A 21.0411 PASS DP=18;VDB=0.573211;SGB=-0.556411;RPB=0.892087;MQB=0.816272;MQSB=0.0887307;BQB=0.331124;MQ0F=0.111111;AF1=0.499998;AC1=1;DP4=8,6,4,0;MQ=34;FQ=24.0321;PV4=0.245098,0.00677519,1,1 GT:PL 0/1:51,0,208
Scaffold_1 546438 . C T 50.0072 PASS DP=16;VDB=0.0625499;SGB=-0.556411;RPB=0.0632055;MQB=0.426445;MQSB=0.0928531;BQB=0.966484;MQ0F=0.125;AF1=0.5;AC1=1;DP4=7,4,2,2;MQ=29;FQ=53.0153;PV4=1,1,1,1 GT:PL 0/1:80,0,139
Scaffold_1 546485 . G A 31.0104 PASS DP=18;VDB=0.535497;SGB=-0.556411;RPB=1;MQB=0.460409;MQSB=0.0897512;BQB=0.823732;MQ0F=0.277778;AF1=0.5;AC1=1;DP4=7,6,3,1;MQ=26;FQ=34.0168;PV4=0.602941,0.438455,1,1 GT:PL 0/1:61,0,130
Scaffold_1 546636 . G A 116.008 PASS DP=10;VDB=0.891746;SGB=-0.616816;RPB=0.503877;MQB=1.00775;MQSB=0.167959;BQB=0.895781;MQ0F=0;AF1=0.500001;AC1=1;DP4=3,1,3,3;MQ=38;FQ=27.0236;PV4=0.571429,1,1,0.196827 GT:PL 0/1:146,0,54
Scaffold_1 546645 . A G 116.008 PASS DP=10;VDB=0.975898;SGB=-0.636426;RPB=0.916482;MQB=0.641538;MQSB=0.167959;BQB=0.641538;MQ0F=0;AF1=0.500002;AC1=1;DP4=3,0,3,4;MQ=38;FQ=24.0321;PV4=0.2,0.108274,0.227567,0.168877 GT:PL 0/1:146,0,51
Scaffold_1 546649 . G A 113.008 PASS DP=10;VDB=0.888498;SGB=-0.616816;RPB=0.503877;MQB=1.00775;MQSB=0.167959;BQB=0.895781;MQ0F=0;AF1=0.500001;AC1=1;DP4=3,1,3,3;MQ=38;FQ=27.0236;PV4=0.571429,1,1,0.0887445 GT:PL 0/1:143,0,54
Scaffold_1 546655 . G A 67.0074 PASS DP=8;VDB=0.89732;SGB=-0.556411;RPB=0.868321;MQB=0.992367;MQSB=0.166667;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,1;MQ=40;FQ=32.0171;PV4=1,1,1,0.11329 GT:PL 0/1:97,0,59
Scaffold_1 546675 . C T 25.0205 PASS DP=10;VDB=0.800701;SGB=-0.511536;RPB=0.809011;MQB=0.924584;MQSB=0.285714;BQB=0.577865;MQ0F=0;AF1=0.499999;AC1=1;DP4=5,1,2,1;MQ=38;FQ=28.0205;PV4=1,0.131705,1,0.389475 GT:PL 0/1:55,0,90
Scaffold_1 546692 . G C 51.0072 PASS DP=15;VDB=0.622417;SGB=-0.556411;RPB=0.99005;MQB=0.778801;MQSB=0.360111;BQB=0.527292;MQ0F=0.0666667;AF1=0.5;AC1=1;DP4=6,4,1,3;MQ=35;FQ=54.0153;PV4=0.559441,0.260594,1,1 GT:PL 0/1:81,0,137
Scaffold_1 546817 . G C 66.0074 PASS DP=11;VDB=0.0236989;SGB=-0.590765;RPB=0.742931;MQB=0.297172;MQSB=0.829029;BQB=0.8618;MQ0F=0.0909091;AF1=0.5;AC1=1;DP4=3,3,0,5;MQ=31;FQ=68.0423;PV4=0.181818,1,1,1 GT:PL 0/1:96,0,102
Scaffold_1 546839 . G C 29.0129 PASS DP=5;VDB=0.18;SGB=-0.453602;RPB=0.333333;MQB=0;MQSB=1;BQB=0.333333;MQ0F=0.2;AF1=0.500062;AC1=1;DP4=1,2,0,2;MQ=30;FQ=9.50881;PV4=1,1,1,1 GT:PL 0/1:59,0,36
Scaffold_1 546945 . T A 60.0141 PASS DP=7;VDB=0.0560361;SGB=-0.511536;RPB=1;MQB=0.833333;MQSB=0.5;BQB=0;MQ0F=0;AF1=0.500792;AC1=1;DP4=1,1,1,2;MQ=41;FQ=-4.11551;PV4=1,1,1,1 GT:PL 0/1:90,0,25
Scaffold_1 546946 . A T 99.0099 PASS DP=8;VDB=0.0376133;SGB=-0.590765;RPB=0;MQB=0.2;MQSB=1.01283;BQB=0.9;MQ0F=0;AF1=0.50025;AC1=1;DP4=0,2,3,2;MQ=38;FQ=4.77417;PV4=0.428571,0.389455,1,1 GT:PL 0/1:129,0,30
Scaffold_1 546950 . T A 57.0073 PASS DP=8;VDB=0.0618664;SGB=-0.511536;RPB=0.28717;MQB=0.574341;MQSB=1;BQB=0.28717;MQ0F=0;AF1=0.500002;AC1=1;DP4=0,3,1,2;MQ=37;FQ=25.0273;PV4=1,1,1,1 GT:PL 0/1:87,0,52
Scaffold_1 546973 . C T 115.042 PASS DP=9;VDB=0.507898;SGB=-0.590765;RPB=0.4;MQB=0.2;MQSB=0.810265;BQB=0.4;MQ0F=0.111111;AF1=0.503994;AC1=1;DP4=0,2,3,2;MQ=39;FQ=-9.50208;PV4=0.428571,1,1,0.257257 GT:PL 0/1:145,0,18
Scaffold_1 556687 . C A 25.0205 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=1;MQSB=1.01283;BQB=0.4;MQ0F=0;AF1=0.499999;AC1=1;DP4=4,1,0,2;MQ=60;FQ=28.0219;PV4=0.142857,1,1,1 GT:PL 0/1:55,0,116
Scaffold_1 574112 . G T 15.1417 PASS DP=4;VDB=0.94;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.499993;AC1=1;DP4=2,0,1,1;MQ=49;FQ=17.7563;PV4=1,0.382149,0.0160597,0.340606 GT:PL 0/1:45,0,56
Scaffold_1 574120 . C T 29.0124 PASS DP=4;VDB=0.94;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=1;BQB=0;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=49;FQ=27.2588;PV4=1,1,0.0160597,1 GT:PL 0/1:59,0,56
Scaffold_1 574127 . G A 29.0123 PASS DP=5;VDB=0.94;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,1,1;MQ=49;FQ=30.5634;PV4=1,1,0.0160597,1 GT:PL 0/1:59,0,63
Scaffold_1 576602 . T C 27.9788 PASS DP=3;VDB=0.154358;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=26;FQ=-35.9869 GT:PL 1/1:60,9,0
Scaffold_1 576821 . T C 42.1422 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:72,0,12
Scaffold_1 576826 . A G 38.1426 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:68,0,12
Scaffold_1 576835 . G A 42.1422 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:72,0,12
Scaffold_1 576842 . C T 42.1422 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:72,0,12
Scaffold_1 576845 . T C 42.1422 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:72,0,12
Scaffold_1 576856 . C T 42.1422 PASS DP=4;VDB=0.44;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.516288;AC1=1;DP4=1,0,1,1;MQ=43;FQ=-15.1212;PV4=1,1,1,1 GT:PL 0/1:72,0,12
Scaffold_1 576953 . T C 43.5131 PASS DP=4;VDB=0.566962;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,4;MQ=34;FQ=-38.9864 GT:PL 1/1:76,12,0
Scaffold_1 577993 . C T 118.264 PASS DP=5;VDB=0.37035;SGB=-0.590765;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,1;MQ=52;FQ=-41.9862 GT:PL 1/1:151,15,0
Scaffold_1 578046 . C T 79.9725 PASS DP=3;VDB=0.0983484;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,1;MQ=50;FQ=-35.9869 GT:PL 1/1:112,9,0
Scaffold_1 578156 . G A 40.9724 PASS DP=3;VDB=0.519801;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,3;MQ=40;FQ=-35.9869 GT:PL 1/1:73,9,0
Scaffold_1 578238 . A G 41.7648 PASS DP=3;VDB=0.6;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=40;FQ=-32.988 GT:PL 1/1:73,6,0
Scaffold_1 581745 . C G 17.4977 PASS DP=14;VDB=0.318564;SGB=-0.511536;RPB=0.360295;MQB=0.594025;MQSB=0.8618;BQB=0.920044;MQ0F=0.357143;AF1=0.555404;AC1=1;DP4=3,5,2,1;MQ=18;FQ=-20.0294;PV4=0.545455,0.439983,1,1 GT:PL 0/1:47,0,7
Scaffold_1 581756 . T C 22.0341 PASS DP=15;VDB=0.00143357;SGB=-0.616816;RPB=0.0102252;MQB=0.777113;MQSB=0.470358;BQB=0.777113;MQ0F=0.266667;AF1=0.5;AC1=1;DP4=5,2,2,4;MQ=21;FQ=22.5004;PV4=0.286131,0.155726,1,0.000107382 GT:PL 0/1:52,0,53
Scaffold_1 581768 . G A 11.3382 PASS DP=16;VDB=0.301053;SGB=-0.511536;RPB=0.239651;MQB=0.597928;MQSB=0.50373;BQB=0.996435;MQ0F=0.25;AF1=0.499983;AC1=1;DP4=6,4,2,1;MQ=21;FQ=13.6896;PV4=1,0.355431,1,0.447843 GT:PL 0/1:41,0,50
Scaffold_1 581905 . G A 33.0091 PASS DP=9;VDB=0.0349627;SGB=-0.511536;RPB=0.809011;MQB=0.809011;MQSB=0.5;BQB=0.462292;MQ0F=0;AF1=0.5;AC1=1;DP4=1,5,1,2;MQ=29;FQ=35.8039;PV4=1,1,1,1 GT:PL 0/1:63,0,76
Scaffold_1 581922 . G A 33.0091 PASS DP=9;VDB=0.0349627;SGB=-0.511536;RPB=0.924584;MQB=0.809011;MQSB=1;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=0,6,1,2;MQ=29;FQ=35.6843;PV4=0.333333,1,1,1 GT:PL 0/1:63,0,74
Scaffold_1 581924 . A G 33.0091 PASS DP=9;VDB=0.0349627;SGB=-0.511536;RPB=0.924584;MQB=0.809011;MQSB=1;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=0,6,1,2;MQ=29;FQ=35.6843;PV4=0.333333,1,1,1 GT:PL 0/1:63,0,74
Scaffold_1 581951 . G T 36.0081 PASS DP=8;VDB=0.0349627;SGB=-0.511536;RPB=0.900802;MQB=0.450401;MQSB=1;BQB=0.900802;MQ0F=0;AF1=0.500005;AC1=1;DP4=0,5,1,2;MQ=26;FQ=20.0042;PV4=0.375,1,1,1 GT:PL 0/1:66,0,47
Scaffold_1 585203 . T C 11.1139 PASS DP=2;VDB=0.26;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=28;FQ=-32.9882 GT:PL 1/1:42,6,0
Scaffold_1 585736 . C T 31.7673 PASS DP=2;VDB=0.1;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-32.988 GT:PL 1/1:63,6,0
Scaffold_1 585737 . G A 39.765 PASS DP=2;VDB=0.06;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-32.988 GT:PL 1/1:71,6,0
Scaffold_1 586496 . C A 28.0137 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,2;MQ=60;FQ=31.0185;PV4=0.466667,0.270735,1,1 GT:PL 0/1:58,0,151
Scaffold_1 591491 . G T 31.0104 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,2,0;MQ=60;FQ=34.0165;PV4=0.4,1,1,0.0122777 GT:PL 0/1:61,0,102
Scaffold_1 616208 . C A 43.7647 PASS DP=3;VDB=0.02;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,2,0;MQ=60;FQ=-32.988 GT:PL 1/1:75,6,0
Scaffold_1 623881 . G T 49.0072 PASS DP=10;VDB=0.0221621;SGB=-0.511536;RPB=0.115573;MQB=0.924584;MQSB=1;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,0;MQ=60;FQ=52.0153;PV4=0.5,1,1,0.0228127 GT:PL 0/1:79,0,177
Scaffold_1 633855 . G T 34.0114 PASS DP=5;VDB=0.851467;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=1,0,3,0;MQ=46;FQ=4.13262;PV4=1,0.246411,0.222597,0.333333 GT:PL 0/1:64,0,29
Scaffold_1 633868 . T C 41.0101 PASS DP=4;VDB=0.845642;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=1,0,3,0;MQ=46;FQ=4.1333;PV4=1,1,0.222597,1 GT:PL 0/1:71,0,29
Scaffold_1 633895 . G A 41.0101 PASS DP=5;VDB=0.857144;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=0,1,3,0;MQ=46;FQ=4.1333;PV4=0.25,0.333333,0.222597,0.235664 GT:PL 0/1:71,0,29
Scaffold_1 633944 . G A 48.0072 PASS DP=9;VDB=0.845642;SGB=-0.511536;RPB=0.810265;MQB=0.405132;MQSB=0.607698;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,3,0;MQ=58;FQ=51.0149;PV4=0.142857,0.360486,0.0761094,0.309704 GT:PL 0/1:78,0,118
Scaffold_1 633994 . G A 72.0074 PASS DP=12;VDB=0.552878;SGB=-0.590765;RPB=0.8618;MQB=0.0891517;MQSB=0.950952;BQB=0.8618;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,3,2;MQ=55;FQ=75.0156;PV4=0.5671,0.187113,0.0353079,0.0794036 GT:PL 0/1:102,0,168
Scaffold_1 633995 . C T 72.0074 PASS DP=12;VDB=0.539429;SGB=-0.590765;RPB=0.8618;MQB=0.0891517;MQSB=0.950952;BQB=0.8618;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,3,2;MQ=55;FQ=75.0156;PV4=0.5671,0.246117,0.0353079,0.0942452 GT:PL 0/1:102,0,165
Scaffold_1 634032 . A G 97.0078 PASS DP=11;VDB=0.187998;SGB=-0.590765;RPB=0.742931;MQB=0.0891517;MQSB=0.683497;BQB=0.208021;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,2,3;MQ=53;FQ=100.015;PV4=1,1,0.0136198,1 GT:PL 0/1:127,0,165
Scaffold_1 634072 . G A 115.008 PASS DP=13;VDB=0.417842;SGB=-0.616816;RPB=0.828239;MQB=0.0511259;MQSB=0.777113;BQB=0.961166;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,3,3;MQ=53;FQ=118.015;PV4=1,1,0.00418682,1 GT:PL 0/1:145,0,182
Scaffold_1 634081 . G A 120.008 PASS DP=12;VDB=0.438189;SGB=-0.616816;RPB=0.931779;MQB=0.0508243;MQSB=0.6821;BQB=0.864013;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,3;MQ=52;FQ=122.847;PV4=1,1,0.00732894,1 GT:PL 0/1:150,0,164
Scaffold_1 634088 . G T 115.008 PASS DP=13;VDB=0.438189;SGB=-0.616816;RPB=0.891517;MQB=0.0891517;MQSB=0.442128;BQB=0.891517;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,3;MQ=52;FQ=113.892;PV4=0.545455,1,0.0129397,0.331029 GT:PL 0/1:145,0,143
Scaffold_1 634096 . G A 75.0075 PASS DP=10;VDB=0.791535;SGB=-0.590765;RPB=0.761877;MQB=0.0476173;MQSB=0.857112;BQB=0.904729;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,2,3;MQ=49;FQ=78.0019;PV4=1,1,0.000419798,1 GT:PL 0/1:105,0,130
Scaffold_1 634123 . T C 90.0077 PASS DP=10;VDB=0.784982;SGB=-0.590765;RPB=0.428556;MQB=0.0476173;MQSB=0.857112;BQB=0.857112;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,2,3;MQ=49;FQ=93.0124;PV4=1,0.173297,0.000419798,0.3565 GT:PL 0/1:120,0,151
Scaffold_1 634136 . A T 83.0076 PASS DP=9;VDB=0.610267;SGB=-0.556411;RPB=0.649731;MQB=0.0812164;MQSB=0.974597;BQB=0.406082;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,2,2;MQ=51;FQ=85.994;PV4=1,1,4.87063e-06,0.146176 GT:PL 0/1:113,0,136
Scaffold_1 634137 . C T 81.0075 PASS DP=10;VDB=0.598008;SGB=-0.556411;RPB=0.503877;MQB=0.0559863;MQSB=0.895781;BQB=0.727822;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,2,2;MQ=52;FQ=84.0157;PV4=1,1,7.80787e-07,1 GT:PL 0/1:111,0,166
Scaffold_1 634138 . A G 83.0076 PASS DP=10;VDB=0.610267;SGB=-0.556411;RPB=0.243649;MQB=0.0812164;MQSB=0.974597;BQB=0.649731;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,2,2;MQ=51;FQ=85.9725;PV4=1,1,4.87063e-06,1 GT:PL 0/1:113,0,133
Scaffold_1 634191 . T G 44.0073 PASS DP=11;VDB=0.88811;SGB=-0.511536;RPB=0.979382;MQB=0.0497871;MQSB=0.924449;BQB=0.954207;MQ0F=0;AF1=0.5;AC1=1;DP4=5,3,2,1;MQ=55;FQ=47.0153;PV4=1,1,1.11179e-07,0.17502 GT:PL 0/1:74,0,217
Scaffold_1 634220 . T C 38.0077 PASS DP=15;VDB=0.892765;SGB=-0.511536;RPB=0.447727;MQB=0.040184;MQSB=1;BQB=0.748798;MQ0F=0;AF1=0.5;AC1=1;DP4=7,3,2,1;MQ=56;FQ=41.0155;PV4=1,1,3.36187e-09,0.248812 GT:PL 0/1:68,0,255
Scaffold_1 634263 . C A 14.176 PASS DP=11;VDB=0.42;SGB=-0.453602;RPB=0.571429;MQB=0;MQSB=0.571429;BQB=0.857143;MQ0F=0;AF1=0.49999;AC1=1;DP4=6,1,1,1;MQ=56;FQ=17.1004;PV4=0.416667,0.313142,2.1669e-06,1 GT:PL 0/1:44,0,196
Scaffold_1 634281 . G A 53.0072 PASS DP=16;VDB=0.784982;SGB=-0.556411;RPB=0.735784;MQB=0.356561;MQSB=0.934728;BQB=0.77274;MQ0F=0;AF1=0.5;AC1=1;DP4=9,2,1,3;MQ=57;FQ=56.0154;PV4=0.0769231,0.250584,0.00523455,0.36474 GT:PL 0/1:83,0,234
Scaffold_1 634291 . C T 48.0072 PASS DP=16;VDB=0.765925;SGB=-0.556411;RPB=0.778801;MQB=0.367879;MQSB=0.945959;BQB=0.913931;MQ0F=0;AF1=0.5;AC1=1;DP4=8,2,1,3;MQ=57;FQ=51.0153;PV4=0.0949051,0.432279,0.00753645,1 GT:PL 0/1:78,0,219
Scaffold_1 634329 . G T 57.0073 PASS DP=16;VDB=0.765925;SGB=-0.556411;RPB=0.697617;MQB=0.356561;MQSB=1;BQB=0.735784;MQ0F=0;AF1=0.5;AC1=1;DP4=6,5,1,3;MQ=57;FQ=60.0154;PV4=0.569231,1,0.00523455,0.271244 GT:PL 0/1:87,0,234
Scaffold_1 634343 . C T 55.0072 PASS DP=15;VDB=0.314313;SGB=-0.556411;RPB=0.913931;MQB=0.778801;MQSB=0.927743;BQB=0.527292;MQ0F=0;AF1=0.5;AC1=1;DP4=6,4,0,4;MQ=58;FQ=58.0154;PV4=0.0849151,1,0.058378,1 GT:PL 0/1:85,0,227
Scaffold_1 635203 . T C 22.0341 PASS DP=6;VDB=0.1;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.574341;BQB=1;MQ0F=0;AF1=0.499998;AC1=1;DP4=3,1,0,2;MQ=55;FQ=25.0286;PV4=0.4,1,0.000612458,1 GT:PL 0/1:52,0,120
Scaffold_1 635223 . C A 23.0285 PASS DP=7;VDB=0.1;SGB=-0.453602;RPB=0.4;MQB=0.2;MQSB=0.405132;BQB=0.4;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,2,0,2;MQ=53;FQ=26.0258;PV4=0.428571,1,0.0547608,1 GT:PL 0/1:53,0,148
Scaffold_1 635256 . A G 20.0499 PASS DP=9;VDB=0.1;SGB=-0.453602;RPB=0.333333;MQB=0.333333;MQSB=0.750668;BQB=0.333333;MQ0F=0;AF1=0.499997;AC1=1;DP4=3,3,0,2;MQ=52;FQ=23.0366;PV4=0.464286,1,0.0868479,0.370882 GT:PL 0/1:50,0,156
Scaffold_1 635262 . C A 23.0285 PASS DP=8;VDB=0.1;SGB=-0.453602;RPB=0;MQB=0.4;MQSB=0.8;BQB=0.2;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,0,2;MQ=51;FQ=26.0258;PV4=1,1,0.127178,0.00611762 GT:PL 0/1:53,0,125
Scaffold_1 636794 . G T 19.061 PASS DP=9;VDB=0.06;SGB=-0.453602;RPB=0.571429;MQB=1;MQSB=0.974597;BQB=0.571429;MQ0F=0;AF1=0.499997;AC1=1;DP4=5,2,0,2;MQ=60;FQ=22.0421;PV4=0.166667,1,1,1 GT:PL 0/1:49,0,180
Scaffold_1 643554 . G T 28.0137 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.25;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,2,0;MQ=60;FQ=31.0141;PV4=1,1,1,1 GT:PL 0/1:58,0,88
Scaffold_1 646598 . G T 46.0072 PASS DP=9;VDB=0.0221621;SGB=-0.511536;RPB=0.346719;MQB=0.924584;MQSB=1;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,0;MQ=60;FQ=49.0153;PV4=0.5,1,1,1 GT:PL 0/1:76,0,168
Scaffold_1 655945 . G T 30.0112 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,2,0;MQ=60;FQ=30.4799;PV4=1,1,1,1 GT:PL 0/1:60,0,61
Scaffold_1 673010 . G A 26.6538 PASS DP=7;VDB=0.06;SGB=-0.453602;RPB=0.125;MQB=0;MQSB=0;BQB=0.25;MQ0F=0.285714;AF1=0.593902;AC1=1;DP4=0,4,2,0;MQ=24;FQ=-22.0131;PV4=0.0666667,1,1,0.020101 GT:PL 0/1:56,0,5
Scaffold_1 680573 . G A 85.0076 PASS DP=13;VDB=0.0196075;SGB=-0.590765;RPB=0.0194886;MQB=0.95494;MQSB=0.95494;BQB=0.896474;MQ0F=0;AF1=0.5;AC1=1;DP4=2,5,5,0;MQ=60;FQ=88.0158;PV4=0.0277778,0.208947,1,1 GT:PL 0/1:115,0,207
Scaffold_1 680584 . G A 103.008 PASS DP=17;VDB=0.0389458;SGB=-0.616816;RPB=0.188548;MQB=1;MQSB=1;BQB=0.569783;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,5,1;MQ=60;FQ=106.016;PV4=0.286713,0.125651,1,1 GT:PL 0/1:133,0,247
Scaffold_1 680591 . A C 128.008 PASS DP=18;VDB=0.192892;SGB=-0.636426;RPB=0.698693;MQB=1;MQSB=1;BQB=0.933674;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,6,1;MQ=60;FQ=131.016;PV4=0.145105,0.22536,1,1 GT:PL 0/1:158,0,242
Scaffold_1 680616 . A G 119.008 PASS DP=16;VDB=0.226073;SGB=-0.636426;RPB=0.68614;MQB=1;MQSB=1;BQB=0.941512;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,6,1;MQ=60;FQ=122.016;PV4=0.282051,0.253399,1,1 GT:PL 0/1:149,0,207
Scaffold_1 680634 . G A 138.008 PASS DP=15;VDB=0.107308;SGB=-0.651104;RPB=0.244651;MQB=1;MQSB=1;BQB=0.87319;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,7,1;MQ=60;FQ=140.962;PV4=0.118881,0.154303,1,1 GT:PL 0/1:168,0,187
Scaffold_1 680636 . G A 121.008 PASS DP=15;VDB=0.105704;SGB=-0.636426;RPB=0.240074;MQB=0.966012;MQSB=1;BQB=0.714506;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,6,1;MQ=60;FQ=124.014;PV4=0.265734,0.216601,1,1 GT:PL 0/1:151,0,185
Scaffold_1 680638 . C T 102.008 PASS DP=15;VDB=0.104392;SGB=-0.636426;RPB=0.240074;MQB=0.966012;MQSB=1;BQB=0.0114321;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,6,1;MQ=60;FQ=105.016;PV4=0.265734,0.000515448,1,1 GT:PL 0/1:132,0,192
Scaffold_1 680657 . A C 151.008 PASS DP=15;VDB=0.165403;SGB=-0.651104;RPB=0.94925;MQB=1;MQSB=1;BQB=0.471383;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,7,1;MQ=60;FQ=126.009;PV4=0.538462,1,1,1 GT:PL 0/1:181,0,153
Scaffold_1 680661 . C T 102.008 PASS DP=16;VDB=0.155866;SGB=-0.636426;RPB=0.966012;MQB=0.966012;MQSB=1;BQB=0.30295;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,6,1;MQ=60;FQ=105.016;PV4=0.559441,0.0412012,1,1 GT:PL 0/1:132,0,181
Scaffold_1 680683 . C T 91.0077 PASS DP=14;VDB=0.693673;SGB=-0.590765;RPB=0.761877;MQB=0.952347;MQSB=0.916482;BQB=0.904729;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,2;MQ=60;FQ=91.8914;PV4=1,0.320515,1,0.149008 GT:PL 0/1:121,0,123
Scaffold_1 680704 . C T 41.0074 PASS DP=14;VDB=0.672523;SGB=-0.511536;RPB=0.824834;MQB=0.916482;MQSB=0.952347;BQB=0.916482;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,1,2;MQ=60;FQ=44.0154;PV4=1,0.421234,1,1 GT:PL 0/1:71,0,178
Scaffold_1 680705 . G A 105.008 PASS DP=14;VDB=0.374894;SGB=-0.636426;RPB=0.834543;MQB=0.966012;MQSB=1;BQB=0.360111;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,5,2;MQ=60;FQ=108.015;PV4=1,0.0729747,1,1 GT:PL 0/1:135,0,172
Scaffold_1 680718 . C T 64.0073 PASS DP=14;VDB=0.756056;SGB=-0.556411;RPB=0.895781;MQB=1.00775;MQSB=1.00775;BQB=0.783809;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,2,2;MQ=60;FQ=67.0155;PV4=1,0.296229,1,1 GT:PL 0/1:94,0,153
Scaffold_1 680754 . T G 20.0499 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.625;MQ0F=0;AF1=0.499997;AC1=1;DP4=1,3,1,1;MQ=60;FQ=23.0366;PV4=1,0.128478,1,1 GT:PL 0/1:50,0,124
Scaffold_1 680762 . C G 25.0205 PASS DP=6;VDB=0.14;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.875;MQ0F=0;AF1=0.499999;AC1=1;DP4=1,3,1,1;MQ=60;FQ=28.0219;PV4=1,0.437126,1,1 GT:PL 0/1:55,0,117
Scaffold_1 680777 . G A 17.0924 PASS DP=7;VDB=0.26;SGB=-0.453602;RPB=0.4;MQB=1;MQSB=1;BQB=0.7;MQ0F=0;AF1=0.499995;AC1=1;DP4=1,4,1,1;MQ=60;FQ=20.058;PV4=1,0.256655,1,1 GT:PL 0/1:47,0,135
Scaffold_1 680836 . T G 45.0072 PASS DP=8;VDB=0.0312982;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=1;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=48.0153;PV4=1,0.301461,1,1 GT:PL 0/1:75,0,141
Scaffold_1 680840 . T C 52.0072 PASS DP=8;VDB=0.0349627;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=1;BQB=0.600535;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=55.0153;PV4=1,1,1,1 GT:PL 0/1:82,0,131
Scaffold_1 680845 . T C 45.0072 PASS DP=8;VDB=0.0389723;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=1;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=48.0153;PV4=1,1,1,1 GT:PL 0/1:75,0,133
Scaffold_1 680846 . G A 49.0072 PASS DP=8;VDB=0.0389723;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=1;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=52.0153;PV4=1,0.362302,1,1 GT:PL 0/1:79,0,143
Scaffold_1 680848 . T C 52.0072 PASS DP=8;VDB=0.0389723;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=1;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,0,3;MQ=60;FQ=55.0153;PV4=1,1,1,1 GT:PL 0/1:82,0,138
Scaffold_1 680860 . G A 57.0073 PASS DP=6;VDB=0.0532881;SGB=-0.511536;RPB=0.28717;MQB=0.861511;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=59.7497;PV4=1,1,1,1 GT:PL 0/1:87,0,99
Scaffold_1 680866 . C T 57.0073 PASS DP=6;VDB=0.0532881;SGB=-0.511536;RPB=0.28717;MQB=0.861511;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=55.8909;PV4=1,1,1,1 GT:PL 0/1:87,0,85
Scaffold_1 680885 . T C 70.0074 PASS DP=7;VDB=0.225386;SGB=-0.556411;RPB=0.405132;MQB=1.01283;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=64.3765;PV4=0.428571,0.259359,1,0.218294 GT:PL 0/1:100,0,92
Scaffold_1 680891 . G C 76.0075 PASS DP=7;VDB=0.215949;SGB=-0.556411;RPB=0.405132;MQB=1.01283;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=68.6016;PV4=0.428571,0.218294,1,1 GT:PL 0/1:106,0,96
Scaffold_1 680909 . C T 67.0074 PASS DP=8;VDB=0.235052;SGB=-0.556411;RPB=0.405132;MQB=1.01283;MQSB=1;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=60;FQ=69.846;PV4=0.428571,0.1195,1,1 GT:PL 0/1:97,0,111
Scaffold_1 680915 . G A 78.0075 PASS DP=7;VDB=0.235052;SGB=-0.556411;RPB=0.5;MQB=1;MQSB=1;BQB=0.375;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,4;MQ=60;FQ=56.0017;PV4=0.333333,0.0799511,1,0.270735 GT:PL 0/1:108,0,83
Scaffold_1 680916 . A G 75.0075 PASS DP=7;VDB=0.225386;SGB=-0.556411;RPB=0.5;MQB=1;MQSB=1;BQB=0.375;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,4;MQ=60;FQ=55.9881;PV4=0.333333,0.0770244,1,0.270735 GT:PL 0/1:105,0,83
Scaffold_1 680930 . C T 107.008 PASS DP=9;VDB=0.749879;SGB=-0.616816;RPB=0;MQB=0.5;MQSB=1;BQB=0.333333;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=58;FQ=50.0153;PV4=0.25,0.0331929,0.133285,1 GT:PL 0/1:137,0,77
Scaffold_1 680935 . C A 95.0077 PASS DP=9;VDB=0.879762;SGB=-0.590765;RPB=0;MQB=0.4;MQSB=1;BQB=0.4;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,5;MQ=58;FQ=53.0152;PV4=0.285714,0.0544194,0.101555,1 GT:PL 0/1:125,0,80
Scaffold_1 680936 . A T 103.008 PASS DP=9;VDB=0.697961;SGB=-0.616816;RPB=0;MQB=0.5;MQSB=1;BQB=0.333333;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=58;FQ=50.0153;PV4=0.25,0.0309217,0.133285,1 GT:PL 0/1:133,0,77
Scaffold_1 680937 . C T 107.008 PASS DP=9;VDB=0.679639;SGB=-0.616816;RPB=0;MQB=0.5;MQSB=1;BQB=0.416667;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=58;FQ=50.0153;PV4=0.25,0.0355234,0.133285,1 GT:PL 0/1:137,0,77
Scaffold_1 680966 . A C 111.008 PASS DP=8;VDB=0.0157002;SGB=-0.616816;RPB=0;MQB=0.166667;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.500003;AC1=1;DP4=1,1,0,6;MQ=55;FQ=22.0421;PV4=0.25,1,0.075727,1 GT:PL 0/1:141,0,49
Scaffold_1 680974 . G A 101.008 PASS DP=8;VDB=0.00625083;SGB=-0.616816;RPB=0;MQB=0.166667;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,0,6;MQ=55;FQ=31.0185;PV4=0.25,0.261916,0.075727,1 GT:PL 0/1:131,0,58
Scaffold_1 691278 . A G 23.0286 PASS DP=7;VDB=0.548121;SGB=-0.556411;RPB=0.25;MQB=0;BQB=0.5;MQ0F=0.142857;AF1=0.500015;AC1=1;DP4=2,0,4,0;MQ=41;FQ=14.8282;PV4=1,1,0.0229252,0.270735 GT:PL 0/1:53,0,42
Scaffold_1 691286 . G A 24.0241 PASS DP=7;VDB=0.548121;SGB=-0.556411;RPB=0.810265;MQB=0.202566;MQSB=1;BQB=0.405132;MQ0F=0.142857;AF1=0.499999;AC1=1;DP4=2,1,4,0;MQ=44;FQ=27.0193;PV4=0.428571,1,0.00754706,0.218294 GT:PL 0/1:54,0,84
Scaffold_1 691351 . G A 21.0411 PASS DP=7;VDB=0.364077;SGB=-0.511536;RPB=0.28717;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0.142857;AF1=0.499998;AC1=1;DP4=1,2,3,0;MQ=47;FQ=24.032;PV4=0.4,0.319198,0.0199909,0.18695 GT:PL 0/1:51,0,95
Scaffold_1 691369 . A G 34.0087 PASS DP=9;VDB=0.698002;SGB=-0.556411;RPB=0.607698;MQB=0.202566;MQSB=1;BQB=0.810265;MQ0F=0.222222;AF1=0.5;AC1=1;DP4=2,1,4,0;MQ=49;FQ=36.9728;PV4=0.428571,1,0.0562158,1 GT:PL 0/1:64,0,84
Scaffold_1 691405 . C T 25.0205 PASS DP=12;VDB=0.891512;SGB=-0.556411;RPB=0.763675;MQB=0.0803868;MQSB=0.763675;BQB=0.763675;MQ0F=0.166667;AF1=0.499999;AC1=1;DP4=4,3,3,1;MQ=49;FQ=28.0219;PV4=1,1,0.0278974,1 GT:PL 0/1:55,0,163
Scaffold_1 691410 . C T 26.0177 PASS DP=13;VDB=0.952698;SGB=-0.590765;RPB=0.950952;MQB=0.0594345;MQSB=0.924449;BQB=0.950952;MQ0F=0.153846;AF1=0.499999;AC1=1;DP4=4,2,3,2;MQ=46;FQ=29.0205;PV4=1,1,0.0186153,1 GT:PL 0/1:56,0,149
Scaffold_1 691497 . G A 17.0924 PASS DP=17;VDB=0.840365;SGB=-0.556411;RPB=0.77274;MQB=0.0330712;MQSB=0.972604;BQB=0.900862;MQ0F=0.0588235;AF1=0.499995;AC1=1;DP4=5,6,1,3;MQ=53;FQ=20.058;PV4=0.604396,0.229625,0.0109648,0.047454 GT:PL 0/1:47,0,255
Scaffold_1 691543 . T G 10.42 PASS DP=14;VDB=0.714437;SGB=-0.556411;RPB=0.558035;MQB=0.0211283;MQSB=0.908075;BQB=0.0211283;MQ0F=0;AF1=0.499975;AC1=1;DP4=4,5,1,3;MQ=53;FQ=13.2265;PV4=1,0.00468987,0.000335303,0.0124923 GT:PL 0/1:40,0,255
Scaffold_1 691568 . T A 75.0075 PASS DP=15;VDB=0.303109;SGB=-0.556411;RPB=0.0474718;MQB=0.381255;MQSB=0.765017;BQB=0.953497;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,1,3;MQ=58;FQ=78.0156;PV4=1,0.324705,0.0193548,1 GT:PL 0/1:105,0,252
Scaffold_1 691664 . T A 51.0072 PASS DP=9;VDB=0.0389723;SGB=-0.511536;RPB=0.450401;MQB=0.900802;MQSB=0.62023;BQB=0.600535;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,1,2;MQ=54;FQ=54.0153;PV4=1,0.0916055,1,1 GT:PL 0/1:81,0,142
Scaffold_1 691668 . T G 46.0072 PASS DP=9;VDB=0.0389723;SGB=-0.511536;RPB=0.450401;MQB=0.900802;MQSB=0.62023;BQB=0.750668;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,1,2;MQ=54;FQ=49.0153;PV4=1,0.19001,1,1 GT:PL 0/1:76,0,153
Scaffold_1 691681 . T G 59.0073 PASS DP=9;VDB=0.045681;SGB=-0.511536;RPB=0.450401;MQB=0.900802;MQSB=0.750668;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,1,2;MQ=54;FQ=62.0153;PV4=1,1,1,0.347969 GT:PL 0/1:89,0,134
Scaffold_1 705928 . G A 28.0137 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=0.861511;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,2,0;MQ=60;FQ=31.0185;PV4=0.4,1,1,0.133463 GT:PL 0/1:58,0,128
Scaffold_1 707516 . C T 14.176 PASS DP=12;VDB=0.14;SGB=-0.453602;RPB=1;MQB=0;MQSB=0.982603;BQB=0.6;MQ0F=0;AF1=0.49999;AC1=1;DP4=5,5,1,1;MQ=57;FQ=17.1004;PV4=1,1,0,1 GT:PL 0/1:44,0,239
Scaffold_1 707560 . A T 20.0499 PASS DP=10;VDB=0.14;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.89338;BQB=0.714286;MQ0F=0;AF1=0.499997;AC1=1;DP4=3,4,1,1;MQ=56;FQ=23.0366;PV4=1,1,0,0.00126056 GT:PL 0/1:50,0,194
Scaffold_1 722860 . C A 19.061 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;BQB=0.666667;MQ0F=0;AF1=0.499997;AC1=1;DP4=0,3,0,2;MQ=60;FQ=22.0387;PV4=1,0.395103,1,1 GT:PL 0/1:49,0,80
Scaffold_1 745018 . G T 12.272 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=0.4;MQB=0.6;MQSB=0.6;BQB=0.9;MQ0F=0;AF1=0.499984;AC1=1;DP4=4,1,1,1;MQ=51;FQ=15.1493;PV4=1,0.422302,1,1 GT:PL 0/1:42,0,84
Scaffold_1 745552 . T C 28.0137 PASS DP=13;VDB=0.698947;SGB=-0.511536;RPB=0.485672;MQB=0.055638;MQSB=0.931779;BQB=0.898672;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,2,1;MQ=46;FQ=31.0185;PV4=1,0.464738,0.00150464,1 GT:PL 0/1:58,0,228
Scaffold_1 745870 . C T 19.061 PASS DP=6;VDB=0.38;SGB=-0.453602;RPB=0.25;MQB=0.125;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499997;AC1=1;DP4=1,3,0,2;MQ=40;FQ=22.0421;PV4=1,0.0889039,0.0491571,1 GT:PL 0/1:49,0,126
Scaffold_1 745903 . G A 54.0107 PASS DP=4;VDB=0.5;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500397;AC1=1;DP4=0,1,0,3;MQ=39;FQ=3.54723;PV4=1,0.333333,0.333333,1 GT:PL 0/1:84,0,28
Scaffold_1 745949 . G A 31.0121 PASS DP=4;VDB=0.52;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500198;AC1=1;DP4=0,1,0,2;MQ=39;FQ=5.46285;PV4=1,1,0.333333,1 GT:PL 0/1:61,0,31
Scaffold_1 749702 . C A 23.0285 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0.2;MQB=0.6;MQSB=0.810265;BQB=0;MQ0F=0;AF1=0.499999;AC1=1;DP4=1,4,2,0;MQ=44;FQ=26.0258;PV4=0.142857,1,0.246372,1 GT:PL 0/1:53,0,137
Scaffold_1 771509 . G T 22.0341 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=0.900802;BQB=0.666667;MQ0F=0;AF1=0.499998;AC1=1;DP4=3,3,2,0;MQ=60;FQ=25.0286;PV4=0.464286,1,1,0.111649 GT:PL 0/1:52,0,170
Scaffold_1 778571 . C A 15.1417 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.333333;MQB=1;MQSB=0.992367;BQB=0.833333;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,4,2,0;MQ=60;FQ=18.0829;PV4=0.428571,1,1,1 GT:PL 0/1:45,0,146
Scaffold_1 792490 . C A 31.0104 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,2;MQ=60;FQ=34.0159;PV4=0.4,1,1,1 GT:PL 0/1:61,0,98
Scaffold_1 793057 . G T 32.0097 PASS DP=14;VDB=0.0221621;SGB=-0.511536;RPB=0.2628;MQB=1;MQSB=1;BQB=0.973096;MQ0F=0;AF1=0.5;AC1=1;DP4=5,6,3,0;MQ=60;FQ=35.0165;PV4=0.208791,1,1,1 GT:PL 0/1:62,0,255
Scaffold_1 793729 . G T 47.0072 PASS DP=6;VDB=0.0295886;SGB=-0.511536;RPB=0.861511;MQB=0.861511;MQSB=1;BQB=0.574341;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,3;MQ=60;FQ=49.988;PV4=1,0.0856741,1,1 GT:PL 0/1:77,0,99
Scaffold_1 797309 . T C 10.42 PASS DP=13;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0.4;MQSB=0.540433;BQB=0.6;MQ0F=0;AF1=0.499975;AC1=1;DP4=7,3,2,0;MQ=53;FQ=13.2265;PV4=1,1,0.469914,0.00012945 GT:PL 0/1:40,0,214
Scaffold_1 797324 . A G 10.42 PASS DP=14;VDB=0.02;SGB=-0.453602;RPB=0.2;MQB=0.4;MQSB=0.540433;BQB=0.5;MQ0F=0;AF1=0.499975;AC1=1;DP4=7,3,2,0;MQ=53;FQ=13.2265;PV4=1,1,0.469914,0.408599 GT:PL 0/1:40,0,199
Scaffold_1 797374 . C A 35.0083 PASS DP=10;VDB=0.28399;SGB=-0.511536;RPB=0.809011;MQB=0.115573;MQSB=1;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=5,1,3,0;MQ=54;FQ=38.0158;PV4=1,1,0.0161584,1 GT:PL 0/1:65,0,160
Scaffold_1 797376 . C T 35.0083 PASS DP=10;VDB=0.02;SGB=-0.453602;RPB=0.571429;MQB=0.285714;MQSB=1;BQB=0.428571;MQ0F=0;AF1=0.5;AC1=1;DP4=6,1,2,0;MQ=54;FQ=38.0158;PV4=1,1,0.388006,1 GT:PL 0/1:65,0,163
Scaffold_1 797383 . T A 35.0083 PASS DP=10;VDB=0.02;SGB=-0.453602;RPB=0.571429;MQB=0.285714;MQSB=1;BQB=0.285714;MQ0F=0;AF1=0.5;AC1=1;DP4=6,1,2,0;MQ=54;FQ=38.0158;PV4=1,1,0.388006,1 GT:PL 0/1:65,0,154
Scaffold_1 797415 . C A 44.0073 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=0;MQSB=1;BQB=0.833333;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,2,0;MQ=56;FQ=46.9981;PV4=1,1,0.0997914,1 GT:PL 0/1:74,0,98
Scaffold_1 797429 . G A 41.0074 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.5;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,2,0;MQ=57;FQ=44.0153;PV4=0.466667,1,0.0583321,1 GT:PL 0/1:71,0,117
Scaffold_1 800637 . A T 35.7656 PASS DP=2;VDB=0.7;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=53;FQ=-32.988 GT:PL 1/1:67,6,0
Scaffold_1 800639 . C A 39.765 PASS DP=2;VDB=0.68;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=53;FQ=-32.988 GT:PL 1/1:71,6,0
Scaffold_1 809146 . G A 16.1143 PASS DP=10;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1.00775;BQB=0.5;MQ0F=0;AF1=0.499994;AC1=1;DP4=4,4,2,0;MQ=60;FQ=19.069;PV4=0.466667,1,1,1 GT:PL 0/1:46,0,205
Scaffold_1 812368 . C T 24.0241 PASS DP=9;VDB=0.26;SGB=-0.453602;RPB=0.333333;MQB=0.5;MQSB=0.833333;BQB=0.666667;MQ0F=0;AF1=0.499999;AC1=1;DP4=5,1,1,1;MQ=58;FQ=27.0236;PV4=0.464286,0.209877,0.0390704,0.0388535 GT:PL 0/1:54,0,162
Scaffold_1 813841 . G A 15.1417 PASS DP=10;VDB=0.892765;SGB=-0.511536;RPB=0.924584;MQB=0.115573;MQSB=0.162433;BQB=0.809011;MQ0F=0;AF1=0.499992;AC1=1;DP4=1,5,3,0;MQ=52;FQ=18.0829;PV4=0.047619,0.360991,0.000812449,1 GT:PL 0/1:45,0,146
Scaffold_1 813843 . T A 19.061 PASS DP=9;VDB=0.892765;SGB=-0.511536;RPB=0.900802;MQB=0.150134;MQSB=0.150134;BQB=0.750668;MQ0F=0;AF1=0.499997;AC1=1;DP4=0,5,3,0;MQ=51;FQ=22.0421;PV4=0.0178571,0.363466,0.00215897,0.0799653 GT:PL 0/1:49,0,119
Scaffold_1 820102 . A G 94.0249 PASS DP=16;VDB=0.0202676;SGB=-0.616816;RPB=0.666667;MQB=1;BQB=0.333333;MQ0F=0.1875;AF1=0.501994;AC1=1;DP4=2,0,6,0;MQ=38;FQ=-6.96162;PV4=1,1,1,1 GT:PL 0/1:124,0,21
Scaffold_1 820158 . C T 19.061 PASS DP=16;VDB=0.509904;SGB=-0.511536;RPB=0.263597;MQB=0.829029;MQSB=0.222222;BQB=0.360295;MQ0F=0.125;AF1=0.499997;AC1=1;DP4=8,0,1,2;MQ=38;FQ=22.0421;PV4=0.0545455,0.0358541,1,1 GT:PL 0/1:49,0,140
Scaffold_1 820169 . C T 29.0123 PASS DP=8;VDB=0.559209;SGB=-0.511536;RPB=0.28717;MQB=0.574341;MQSB=0;BQB=0.28717;MQ0F=0.125;AF1=0.5;AC1=1;DP4=3,0,1,2;MQ=39;FQ=27.8976;PV4=0.4,0.0350096,1,1 GT:PL 0/1:59,0,57
Scaffold_1 820202 . T C 11.3432 PASS DP=9;VDB=0.0356013;SGB=-0.556411;RPB=1;MQB=1;MQSB=0.333333;BQB=1;MQ0F=0;AF1=0.500609;AC1=1;DP4=0,1,3,1;MQ=31;FQ=-3.60667;PV4=0.4,0.153514,0.0630069,0.0316446 GT:PL 0/1:41,0,26
Scaffold_1 820250 . A G 23.0285 PASS DP=55;VDB=0.000287941;SGB=-0.689466;RPB=0.978791;MQB=0.858611;MQSB=0.930129;BQB=0.912508;MQ0F=0.290909;AF1=0.499999;AC1=1;DP4=10,14,12,4;MQ=20;FQ=26.0258;PV4=0.0544846,1,0.372225,1 GT:PL 0/1:53,0,113
Scaffold_1 820277 . C A 51.0072 PASS DP=98;VDB=0.000730171;SGB=-0.692831;RPB=0.25457;MQB=0.782923;MQSB=0.958657;BQB=0.00337562;MQ0F=0.214286;AF1=0.5;AC1=1;DP4=31,12,15,9;MQ=17;FQ=54.0153;PV4=0.426308,0.00812831,1,1 GT:PL 0/1:81,0,151
Scaffold_1 820342 . A G 86.0076 PASS DP=92;VDB=0.000455068;SGB=-0.692717;RPB=0.943481;MQB=0.854982;MQSB=0.873834;BQB=0.21653;MQ0F=0.26087;AF1=0.5;AC1=1;DP4=12,19,14,9;MQ=20;FQ=89.0144;PV4=0.168315,0.0360167,1,1 GT:PL 0/1:116,0,151
Scaffold_1 820830 . G A 41.0074 PASS DP=22;VDB=0.320361;SGB=-0.590765;RPB=0.925212;MQB=0.245601;MQSB=0.824135;BQB=0.989128;MQ0F=0.318182;AF1=0.5;AC1=1;DP4=8,5,2,3;MQ=22;FQ=41.891;PV4=0.607843,0.263696,1,1 GT:PL 0/1:71,0,73
Scaffold_1 820832 . T C 55.0072 PASS DP=21;VDB=0.0428737;SGB=-0.651104;RPB=0.27833;MQB=0.46131;MQSB=0.636257;BQB=0.800884;MQ0F=0.285714;AF1=0.5;AC1=1;DP4=4,6,7,1;MQ=23;FQ=47.6014;PV4=0.0656109,0.168689,1,0.190572 GT:PL 0/1:85,0,75
Scaffold_1 820834 . C T 35.0083 PASS DP=21;VDB=0.0200665;SGB=-0.651104;RPB=0.513417;MQB=0.971479;MQSB=0.833753;BQB=0.928603;MQ0F=0.285714;AF1=0.5;AC1=1;DP4=4,5,7,1;MQ=24;FQ=38.0021;PV4=0.131222,1,0.386165,0.335604 GT:PL 0/1:65,0,90
Scaffold_1 820986 . C A 61.9785 PASS DP=32;VDB=0.000986863;SGB=-0.670168;RPB=0.612626;MQB=0.236928;MQSB=0.2628;BQB=0.655406;MQ0F=0.1875;AF1=0.667194;AC1=1;DP4=3,1,8,2;MQ=25;FQ=-24.003;PV4=1,0.141113,1,0.162183 GT:PL 0/1:91,0,3
Scaffold_1 821014 . T C 29.0123 PASS DP=136;VDB=1.91554e-06;SGB=-0.680642;RPB=0.32042;MQB=0.584446;MQSB=0.898028;BQB=0.560651;MQ0F=0.154412;AF1=0.5;AC1=1;DP4=43,27,8,4;MQ=33;FQ=32.0178;PV4=1,0.0612471,1,0.244402 GT:PL 0/1:59,0,255
Scaffold_1 821026 . A T 52.0072 PASS DP=161;VDB=4.07432e-08;SGB=-0.69168;RPB=0.343392;MQB=0.940774;MQSB=0.992298;BQB=0.0211502;MQ0F=0.15528;AF1=0.5;AC1=1;DP4=52,25,12,7;MQ=33;FQ=55.0154;PV4=0.787992,0.00564937,0.367933,1 GT:PL 0/1:82,0,255
Scaffold_1 821027 . G A 23.0285 PASS DP=160;VDB=1.94723e-06;SGB=-0.69168;RPB=0.216827;MQB=0.429184;MQSB=0.853954;BQB=0.977279;MQ0F=0.15625;AF1=0.499999;AC1=1;DP4=54,20,15,4;MQ=32;FQ=26.0258;PV4=0.771416,0.294856,0.0830389,1 GT:PL 0/1:53,0,255
Scaffold_1 821028 . C T 88.0076 PASS DP=169;VDB=1.22319e-12;SGB=-0.693141;RPB=0.101733;MQB=0.845354;MQSB=0.731088;BQB=0.126738;MQ0F=0.16568;AF1=0.5;AC1=1;DP4=44,15,26,11;MQ=33;FQ=91.0158;PV4=0.645658,0.00682105,0.257263,1 GT:PL 0/1:118,0,255
Scaffold_1 821031 . A G 225.009 PASS DP=183;VDB=8.24002e-08;SGB=-0.693145;RPB=0.837084;MQB=0.00863352;MQSB=0.977381;BQB=0.01243;MQ0F=0.174863;AF1=0.5;AC1=1;DP4=47,19,29,11;MQ=33;FQ=225.007;PV4=1,0.00175612,1,0.0955221 GT:PL 0/1:255,0,255
Scaffold_1 821036 . T C 53.0072 PASS DP=195;VDB=3.10919e-06;SGB=-0.693021;RPB=0.39708;MQB=0.0857956;MQSB=0.704798;BQB=0.313039;MQ0F=0.189744;AF1=0.5;AC1=1;DP4=62,18,21,6;MQ=31;FQ=56.0154;PV4=1,0.0151142,0.0113845,1 GT:PL 0/1:83,0,255
Scaffold_1 821040 . A T 225.009 PASS DP=215;VDB=2.1165e-16;SGB=-0.693147;RPB=0.763193;MQB=0.00763283;MQSB=0.873126;BQB=0.0839435;MQ0F=0.2;AF1=0.5;AC1=1;DP4=42,17,48,15;MQ=31;FQ=225.007;PV4=0.544584,0.0112609,1,1 GT:PL 0/1:255,0,255
Scaffold_1 821051 . T C 145.008 PASS DP=232;VDB=1.63199e-07;SGB=-0.693141;RPB=0.70523;MQB=0.781769;MQSB=0.412018;BQB=0.900723;MQ0F=0.189655;AF1=0.5;AC1=1;DP4=67,24,29,8;MQ=32;FQ=148.017;PV4=0.6568,0.221401,0.202433,1 GT:PL 0/1:175,0,255
Scaffold_1 821053 . C T 225.009 PASS DP=234;VDB=7.61536e-16;SGB=-0.693147;RPB=0.70376;MQB=0.0512216;MQSB=0.169843;BQB=0.632605;MQ0F=0.196581;AF1=0.5;AC1=1;DP4=49,17,48,16;MQ=33;FQ=225.007;PV4=1,0.180849,1,1 GT:PL 0/1:255,0,255
Scaffold_1 821054 . A C 225.009 PASS DP=237;VDB=2.11925e-09;SGB=-0.693146;RPB=0.593137;MQB=0.000544266;MQSB=0.789132;BQB=0.133899;MQ0F=0.194093;AF1=0.5;AC1=1;DP4=64,25,33,10;MQ=32;FQ=225.007;PV4=0.675128,0.00653469,1,1 GT:PL 0/1:255,0,255
Scaffold_1 821060 . A C 168.009 PASS DP=253;VDB=2.37032e-08;SGB=-0.693145;RPB=0.0340753;MQB=0.414288;MQSB=0.481452;BQB=0.884114;MQ0F=0.189723;AF1=0.5;AC1=1;DP4=70,25,29,11;MQ=33;FQ=171.017;PV4=1,1,0.0814347,1 GT:PL 0/1:198,0,255
Scaffold_1 821068 . G A 225.009 PASS DP=260;VDB=3.67075e-25;SGB=-0.693147;RPB=0.469889;MQB=0.211835;MQSB=0.649813;BQB=0.0970163;MQ0F=0.2;AF1=0.5;AC1=1;DP4=18,8,86,30;MQ=32;FQ=77.0156;PV4=0.62842,1,0.0173219,1 GT:PL 0/1:255,0,104
Scaffold_1 821164 . T C 220.01 PASS DP=52;VDB=0.000938499;SGB=-0.693021;RPB=0.961543;MQB=0.948023;MQSB=0.971731;BQB=0.896791;MQ0F=0.115385;AF1=0.500063;AC1=1;DP4=2,4,11,16;MQ=31;FQ=9.5281;PV4=1,0.211147,1,0.223478 GT:PL 0/1:250,0,36
Scaffold_1 821173 . A C 127.008 PASS DP=32;VDB=0.00410932;SGB=-0.69168;RPB=0.634153;MQB=0.981946;MQSB=0.90557;BQB=0.987428;MQ0F=0.1875;AF1=0.500016;AC1=1;DP4=1,5,5,14;MQ=27;FQ=15.1496;PV4=1,1,1,1 GT:PL 0/1:157,0,42
Scaffold_1 821181 . G A 110.106 PASS DP=23;VDB=0.00035155;SGB=-0.689466;RPB=0.913564;MQB=0.777932;MQSB=0.984877;BQB=0.366241;MQ0F=0.26087;AF1=1;AC1=2;DP4=1,3,4,12;MQ=21;FQ=-45.986;PV4=1,1,1,1 GT:PL 1/1:143,19,0
Scaffold_1 821208 . C A 80.7891 PASS DP=10;VDB=0.000426579;SGB=-0.636426;RPB=0.142857;MQB=0.428571;MQSB=0.857143;BQB=0.642857;MQ0F=0.3;AF1=1;AC1=2;DP4=0,2,2,5;MQ=24;FQ=-36.9867;PV4=1,1,1,0.0360148 GT:PL 1/1:113,10,0
Scaffold_1 821598 . A C 101.025 PASS DP=27;VDB=0.00688729;SGB=-0.616816;RPB=0.997919;MQB=0.0177152;MQSB=0.852144;BQB=0.301194;MQ0F=0.333333;AF1=0.501994;AC1=1;DP4=4,4,6,0;MQ=28;FQ=-6.96162;PV4=0.0849151,1,1,1 GT:PL 0/1:131,0,21
Scaffold_1 821632 . G A 76.0076 PASS DP=21;VDB=0.0124503;SGB=-0.590765;RPB=0.50373;MQB=0.0452104;MQSB=0.163537;BQB=0.273507;MQ0F=0.285714;AF1=0.500013;AC1=1;DP4=3,5,5,0;MQ=27;FQ=16.1222;PV4=0.0753691,1,1,0.00576603 GT:PL 0/1:106,0,43
Scaffold_1 822442 . A C 25.0205 PASS DP=26;VDB=0.0349627;SGB=-0.511536;RPB=0.27833;MQB=0.228678;MQSB=0.970092;BQB=0.839089;MQ0F=0.0384615;AF1=0.499999;AC1=1;DP4=10,5,3,0;MQ=41;FQ=28.0219;PV4=0.522059,0.181921,1,0.0443937 GT:PL 0/1:55,0,247
Scaffold_1 822501 . A G 225.009 PASS DP=55;VDB=0.00116965;SGB=-0.692831;RPB=0.191226;MQB=0.839972;MQSB=0.818;BQB=0.995546;MQ0F=0.0363636;AF1=0.5;AC1=1;DP4=5,2,16,8;MQ=43;FQ=112.016;PV4=1,1,0.443035,0.225779 GT:PL 0/1:255,0,139
Scaffold_1 822504 . C A 11.3381 PASS DP=55;VDB=0.131345;SGB=-0.556411;RPB=0.945259;MQB=0.440115;MQSB=0.883458;BQB=0.747674;MQ0F=0.0363636;AF1=0.49998;AC1=1;DP4=18,8,3,1;MQ=44;FQ=14.1838;PV4=1,0.269281,1,1 GT:PL 0/1:41,0,255
Scaffold_1 822518 . A T 148.008 PASS DP=52;VDB=0.00170801;SGB=-0.676189;RPB=0.979753;MQB=0.91287;MQSB=0.95171;BQB=0.0421013;MQ0F=0.0384615;AF1=0.5;AC1=1;DP4=11,7,7,4;MQ=44;FQ=151.017;PV4=1,0.00359311,1,1 GT:PL 0/1:178,0,255
Scaffold_1 822534 . C A 16.1143 PASS DP=48;VDB=0.118267;SGB=-0.556411;RPB=0.936886;MQB=0.36927;MQSB=0.990092;BQB=0.404254;MQ0F=0.0416667;AF1=0.499994;AC1=1;DP4=16,8,1,3;MQ=41;FQ=19.069;PV4=0.269353,0.199259,1,0.226984 GT:PL 0/1:46,0,255
Scaffold_1 822567 . A G 225.009 PASS DP=34;VDB=1.60055e-06;SGB=-0.688148;RPB=0.279855;MQB=0.12893;MQSB=0.490451;BQB=0.0653974;MQ0F=0;AF1=0.500002;AC1=1;DP4=1,5,6,9;MQ=44;FQ=24.0321;PV4=0.612616,1,1,1 GT:PL 0/1:255,0,51
Scaffold_1 822573 . T A 10.42 PASS DP=32;VDB=0.0499763;SGB=-0.556411;RPB=0.554105;MQB=0.497806;MQSB=0.727471;BQB=0.913564;MQ0F=0;AF1=0.499975;AC1=1;DP4=7,9,2,2;MQ=47;FQ=13.2265;PV4=1,0.247213,0.061202,0.0766861 GT:PL 0/1:40,0,255
Scaffold_1 938933 . G T 25.0205 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1.01283;BQB=0.8;MQ0F=0;AF1=0.499999;AC1=1;DP4=1,4,2,0;MQ=60;FQ=28.0219;PV4=0.142857,1,1,1 GT:PL 0/1:55,0,143
Scaffold_1 939639 . C T 17.0924 PASS DP=7;VDB=0.961028;SGB=-0.511536;RPB=1.01283;MQB=0.202566;MQSB=0.7;BQB=1.01283;MQ0F=0;AF1=0.499995;AC1=1;DP4=3,1,2,1;MQ=49;FQ=20.058;PV4=1,1,0.00161836,0.220317 GT:PL 0/1:47,0,124
Scaffold_1 940243 . T G 33.2209 PASS DP=4;VDB=0.0349627;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.526315;AC1=1;DP4=0,1,1,2;MQ=39;FQ=-17.0717;PV4=1,1,0.0615904,1 GT:PL 0/1:63,0,10
Scaffold_1 940251 . T G 45.9722 PASS DP=4;VDB=0.0349627;SGB=-0.511536;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,1,2;MQ=29;FQ=-35.9869 GT:PL 1/1:78,9,0
Scaffold_1 940269 . A T 36.0762 PASS DP=4;VDB=0.0389723;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.508032;AC1=1;DP4=0,1,1,2;MQ=39;FQ=-12.2521;PV4=1,1,0.0615904,1 GT:PL 0/1:66,0,15
Scaffold_1 940275 . G A 36.0108 PASS DP=4;VDB=0.0433485;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=0,1,1,2;MQ=39;FQ=4.13293;PV4=1,1,0.0615904,1 GT:PL 0/1:66,0,29
Scaffold_1 940287 . G A 36.0297 PASS DP=4;VDB=0.0481133;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.502513;AC1=1;DP4=0,1,1,2;MQ=39;FQ=-7.77808;PV4=1,1,0.0615904,1 GT:PL 0/1:66,0,20
Scaffold_1 940290 . T C 36.0149 PASS DP=4;VDB=0.0433485;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500792;AC1=1;DP4=0,1,1,2;MQ=39;FQ=-4.11572;PV4=1,1,0.0615904,1 GT:PL 0/1:66,0,25
Scaffold_1 940300 . C A 36.0108 PASS DP=4;VDB=0.0532881;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=0,1,1,2;MQ=39;FQ=4.13293;PV4=1,1,0.0615904,1 GT:PL 0/1:66,0,29
Scaffold_1 940301 . C A 33.0118 PASS DP=4;VDB=0.0532881;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500315;AC1=1;DP4=0,1,1,2;MQ=39;FQ=4.1324;PV4=1,0.211325,0.0615904,1 GT:PL 0/1:63,0,29
Scaffold_1 940305 . G A 33.016 PASS DP=4;VDB=0.0532881;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500792;AC1=1;DP4=0,1,1,2;MQ=39;FQ=-4.11593;PV4=1,1,0.0615904,0.211325 GT:PL 0/1:63,0,25
Scaffold_1 940382 . C T 11.3445 PASS DP=4;VDB=0.121629;SGB=-0.511536;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500772;AC1=1;DP4=1,0,3,0;MQ=37;FQ=-4.1818;PV4=1,1,0.0939824,0.333333 GT:PL 0/1:41,0,25
Scaffold_1 940404 . T C 36.0135 PASS DP=5;VDB=0.27062;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,4,0;MQ=40;FQ=-3.53115;PV4=1,0.342519,0.138329,0.342519 GT:PL 0/1:66,0,26
Scaffold_1 940408 . G A 40.0129 PASS DP=5;VDB=0.281254;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,4,0;MQ=40;FQ=-3.531;PV4=1,1,0.138329,0.342519 GT:PL 0/1:70,0,26
Scaffold_1 940412 . G A 36.0135 PASS DP=5;VDB=0.27062;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,4,0;MQ=40;FQ=-3.53115;PV4=1,0.342519,0.138329,0.342519 GT:PL 0/1:66,0,26
Scaffold_1 940427 . A G 29.0178 PASS DP=5;VDB=0.27062;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500628;AC1=1;DP4=1,0,4,0;MQ=40;FQ=-3.53212;PV4=1,0.342519,0.138329,1 GT:PL 0/1:59,0,26
Scaffold_1 940441 . C T 47.513 PASS DP=5;VDB=0.27062;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,0;MQ=33;FQ=-38.9864 GT:PL 1/1:80,12,0
Scaffold_1 940446 . C G 33.0146 PASS DP=5;VDB=0.281254;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,4,0;MQ=40;FQ=-3.53139;PV4=1,0.342519,0.138329,1 GT:PL 0/1:63,0,26
Scaffold_1 940501 . C G 62.0128 PASS DP=5;VDB=0.775568;SGB=-0.556411;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,3,1;MQ=51;FQ=-3.53091;PV4=1,0.239377,0.132045,0.342519 GT:PL 0/1:92,0,26
Scaffold_1 940529 . C T 90.0131 PASS DP=5;VDB=0.535497;SGB=-0.556411;RPB=1;MQB=1;MQSB=0.5;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=1,0,2,2;MQ=55;FQ=-3.53091;PV4=1,0.247513,0.2203,0.342519 GT:PL 0/1:120,0,26
Scaffold_1 940555 . T C 55.0072 PASS DP=6;VDB=0.470313;SGB=-0.511536;RPB=0.666667;MQB=0.333333;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,1,2;MQ=57;FQ=30.0125;PV4=0.4,0.203108,0.192589,1 GT:PL 0/1:85,0,57
Scaffold_1 940564 . T C 96.0077 PASS DP=6;VDB=0.811811;SGB=-0.556411;RPB=1;MQB=0.25;MQSB=0.861511;BQB=0.5;MQ0F=0;AF1=0.500001;AC1=1;DP4=2,0,1,3;MQ=54;FQ=27.0236;PV4=0.4,1,0.12747,0.363338 GT:PL 0/1:126,0,54
Scaffold_1 940566 . A G 93.0077 PASS DP=6;VDB=0.820274;SGB=-0.556411;RPB=1;MQB=0.25;MQSB=0.861511;BQB=0.75;MQ0F=0;AF1=0.500001;AC1=1;DP4=2,0,1,3;MQ=54;FQ=27.0236;PV4=0.4,1,0.12747,0.289169 GT:PL 0/1:123,0,54
Scaffold_1 940592 . G T 86.0076 PASS DP=7;VDB=0.156562;SGB=-0.556411;RPB=0.25;MQB=0.25;MQSB=0.75;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,2,2;MQ=53;FQ=31.0185;PV4=0.466667,0.270735,0.0725364,1 GT:PL 0/1:116,0,58
Scaffold_1 940624 . C T 130.008 PASS DP=9;VDB=0.159342;SGB=-0.636426;RPB=0.857143;MQB=0.142857;MQSB=0.89338;BQB=0.857143;MQ0F=0;AF1=0.500001;AC1=1;DP4=1,1,3,4;MQ=46;FQ=28.0219;PV4=1,0.313142,0.0734961,1 GT:PL 0/1:160,0,55
Scaffold_1 940635 . C T 119.008 PASS DP=10;VDB=0.159342;SGB=-0.636426;RPB=0.641538;MQB=0.183296;MQSB=0.895781;BQB=0.824834;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,4;MQ=47;FQ=56.0154;PV4=1,0.183905,0.0387026,1 GT:PL 0/1:149,0,83
Scaffold_1 940677 . A G 94.0077 PASS DP=11;VDB=0.377633;SGB=-0.636426;RPB=0.916482;MQB=0.0916482;MQSB=0.952347;BQB=0.916482;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,4,3;MQ=42;FQ=60.0145;PV4=1,0.272369,0.00784199,1 GT:PL 0/1:124,0,87
Scaffold_1 940685 . G A 108.008 PASS DP=11;VDB=0.329426;SGB=-0.651104;RPB=1;MQB=0.0497871;MQSB=0.950952;BQB=0.716531;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,5,3;MQ=43;FQ=35.0165;PV4=0.545455,1,0.0105572,1 GT:PL 0/1:138,0,62
Scaffold_1 940686 . G T 91.0077 PASS DP=11;VDB=0.366715;SGB=-0.636426;RPB=0.916482;MQB=0.0916482;MQSB=0.952347;BQB=0.824834;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,4,3;MQ=43;FQ=48.0152;PV4=1,1,0.00839751,1 GT:PL 0/1:121,0,75
Scaffold_1 940720 . T A 74.0076 PASS DP=9;VDB=0.604698;SGB=-0.636426;RPB=0.857143;MQB=0;MQSB=0.89338;BQB=0.785714;MQ0F=0;AF1=0.500016;AC1=1;DP4=0,2,5,2;MQ=38;FQ=15.1496;PV4=0.166667,1,0.0101082,1 GT:PL 0/1:104,0,42
Scaffold_1 940721 . T C 82.0076 PASS DP=9;VDB=0.579489;SGB=-0.636426;RPB=0.857143;MQB=0;MQSB=0.89338;BQB=0.5;MQ0F=0;AF1=0.500006;AC1=1;DP4=0,2,5,2;MQ=38;FQ=19.069;PV4=0.166667,1,0.0101082,1 GT:PL 0/1:112,0,46
Scaffold_1 940729 . C G 82.0076 PASS DP=9;VDB=0.604698;SGB=-0.636426;RPB=0.857143;MQB=0;MQSB=0.89338;BQB=0.857143;MQ0F=0;AF1=0.500003;AC1=1;DP4=0,2,5,2;MQ=38;FQ=22.0421;PV4=0.166667,0.313142,0.0101082,0.228051 GT:PL 0/1:112,0,49
Scaffold_1 940738 . G C 82.0078 PASS DP=9;VDB=0.715797;SGB=-0.616816;RPB=1;MQB=0;MQSB=0.992367;BQB=0.5;MQ0F=0;AF1=0.500025;AC1=1;DP4=0,2,4,2;MQ=40;FQ=13.2265;PV4=0.428571,1,0.0151553,0.237468 GT:PL 0/1:112,0,40
Scaffold_1 940764 . A G 40.0129 PASS DP=5;VDB=0.0516381;SGB=-0.556411;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500629;AC1=1;DP4=0,1,4,0;MQ=39;FQ=-3.531;PV4=0.2,0.269504,0.0806048,1 GT:PL 0/1:70,0,26
Scaffold_1 940795 . A T 37.9727 PASS DP=4;VDB=0.0785113;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=29;FQ=-35.9869 GT:PL 1/1:70,9,0
Scaffold_1 940869 . G T 19.1672 PASS DP=3;VDB=0.42;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.512848;AC1=1;DP4=1,0,0,2;MQ=53;FQ=-14.1567;PV4=0.333333,1,0.288921,0.333333 GT:PL 0/1:49,0,13
Scaffold_1 940872 . C T 24.0582 PASS DP=3;VDB=0.42;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.503993;AC1=1;DP4=1,0,0,2;MQ=53;FQ=-9.50305;PV4=0.333333,1,0.288921,0.333333 GT:PL 0/1:54,0,18
Scaffold_1 940873 . A G 32.011 PASS DP=3;VDB=0.42;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.500158;AC1=1;DP4=1,0,0,2;MQ=53;FQ=6.20122;PV4=0.333333,0.333333,0.288921,0.333333 GT:PL 0/1:62,0,32
Scaffold_1 940889 . A G 32.1171 PASS DP=4;VDB=0.52;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.512851;AC1=1;DP4=1,0,0,2;MQ=54;FQ=-14.1557;PV4=0.333333,1,0.333333,1 GT:PL 0/1:62,0,13
Scaffold_1 940905 . T C 13.943 PASS DP=4;VDB=0.5;SGB=-0.453602;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,2;MQ=51;FQ=-32.9881 GT:PL 1/1:45,6,0
Scaffold_1 940914 . G A 35.1158 PASS DP=7;VDB=0.42;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.512852;AC1=1;DP4=1,0,0,2;MQ=53;FQ=-14.1557;PV4=0.333333,1,0.288921,1 GT:PL 0/1:65,0,13
Scaffold_1 940924 . A T 152.03 PASS DP=8;VDB=0.427991;SGB=-0.616816;RPB=1;MQB=1;MQSB=0.405132;BQB=1;MQ0F=0;AF1=0.502513;AC1=1;DP4=1,0,3,3;MQ=57;FQ=-7.77799;PV4=1,0.360486,0.338122,1 GT:PL 0/1:182,0,20
Scaffold_1 940948 . C T 175.127 PASS DP=11;VDB=0.299782;SGB=-0.651104;RPB=1;MQB=1;MQSB=0.487298;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=1,0,4,4;MQ=58;FQ=-31.9885;PV4=1,1,0.344048,1 GT:PL 1/1:206,5,0
Scaffold_1 940991 . C T 196.012 PASS DP=12;VDB=0.193383;SGB=-0.670168;RPB=0.9;MQB=0.7;MQSB=0.253351;BQB=0.95;MQ0F=0;AF1=0.500315;AC1=1;DP4=2,0,5,5;MQ=59;FQ=4.13346;PV4=0.469697,1,0.229122,0.34032 GT:PL 0/1:226,0,29
Scaffold_1 941070 . G T 78.0075 PASS DP=11;VDB=0.681661;SGB=-0.590765;RPB=0.238087;MQB=0.666643;MQSB=0.916482;BQB=0.904729;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,2;MQ=56;FQ=80.994;PV4=1,0.199275,0.150042,0.076376 GT:PL 0/1:108,0,131
Scaffold_1 941086 . T A 92.0077 PASS DP=11;VDB=0.954032;SGB=-0.616816;RPB=0.742931;MQB=0.208021;MQSB=0.924449;BQB=0.8618;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,3,3;MQ=55;FQ=94.3769;PV4=0.545455,0.272283,0.0994637,0.0194599 GT:PL 0/1:122,0,130
Scaffold_1 941141 . A G 34.0087 PASS DP=10;VDB=0.522837;SGB=-0.556411;RPB=0.202566;MQB=0.202566;MQSB=0.6;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,3,1;MQ=47;FQ=37.0159;PV4=1,0.134722,0.0337574,0.218294 GT:PL 0/1:64,0,111
Scaffold_1 941175 . C T 103.008 PASS DP=14;VDB=0.645707;SGB=-0.636426;RPB=0.245404;MQB=0.0102252;MQSB=0.547344;BQB=0.828239;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,5,2;MQ=49;FQ=106.016;PV4=0.592075,0.164954,0.00201402,1 GT:PL 0/1:133,0,177
Scaffold_1 941219 . A T 110.008 PASS DP=11;VDB=0.119488;SGB=-0.636426;RPB=0.458241;MQB=0.0916482;MQSB=0.335918;BQB=0.916482;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,4,3;MQ=44;FQ=49.0153;PV4=0.2,0.272369,0.0138914,1 GT:PL 0/1:140,0,76
Scaffold_1 941220 . C G 106.008 PASS DP=10;VDB=0.128343;SGB=-0.636426;RPB=0.458241;MQB=0.0916482;MQSB=0.335918;BQB=0.824834;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,4,3;MQ=44;FQ=39.0157;PV4=0.2,1,0.0138914,1 GT:PL 0/1:136,0,66
Scaffold_1 941233 . T C 102.008 PASS DP=11;VDB=0.122391;SGB=-0.636426;RPB=0.924449;MQB=0.0401934;MQSB=0.683497;BQB=0.562708;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,4,3;MQ=46;FQ=86.9475;PV4=0.545455,0.10155,0.00602738,1 GT:PL 0/1:132,0,114
Scaffold_1 941234 . G A 101.008 PASS DP=11;VDB=0.119488;SGB=-0.636426;RPB=0.924449;MQB=0.0401934;MQSB=0.683497;BQB=0.562708;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,4,3;MQ=46;FQ=86.9299;PV4=0.545455,0.10155,0.00602738,1 GT:PL 0/1:131,0,114
Scaffold_1 941235 . G A 108.008 PASS DP=11;VDB=0.128343;SGB=-0.636426;RPB=0.924449;MQB=0.0401934;MQSB=0.683497;BQB=0.924449;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,4,3;MQ=46;FQ=84.0071;PV4=0.545455,0.441443,0.00602738,1 GT:PL 0/1:138,0,111
Scaffold_1 941270 . G A 163.009 PASS DP=15;VDB=0.690812;SGB=-0.662043;RPB=1;MQB=0.096972;MQSB=0.920266;BQB=0.742584;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,5,4;MQ=49;FQ=71.0155;PV4=1,1,0.0305966,1 GT:PL 0/1:193,0,98
Scaffold_1 941281 . G A 133.008 PASS DP=14;VDB=0.867721;SGB=-0.651104;RPB=0.94394;MQB=0.125315;MQSB=0.935451;BQB=0.594978;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,5,3;MQ=49;FQ=70.0155;PV4=1,1,0.02586,1 GT:PL 0/1:163,0,97
Scaffold_1 941286 . T G 174.009 PASS DP=17;VDB=0.986192;SGB=-0.670168;RPB=0.778801;MQB=0.0773047;MQSB=0.980199;BQB=0.960789;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,7,3;MQ=49;FQ=76.0156;PV4=0.58042,1,0.0282999,0.202339 GT:PL 0/1:204,0,103
Scaffold_1 941299 . G T 200.009 PASS DP=15;VDB=0.619273;SGB=-0.676189;RPB=0.927041;MQB=0.1098;MQSB=0.99778;BQB=0.973096;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,7,4;MQ=48;FQ=48.0153;PV4=1,0.31064,0.0470623,0.108284 GT:PL 0/1:230,0,75
Scaffold_1 941332 . C T 145.008 PASS DP=15;VDB=0.251186;SGB=-0.670168;RPB=0.913931;MQB=0.140858;MQSB=0.599223;BQB=0.266468;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,8,2;MQ=52;FQ=72.0156;PV4=1,0.068063,0.034668,1 GT:PL 0/1:175,0,99
Scaffold_1 941354 . C T 194.009 PASS DP=17;VDB=0.0941654;SGB=-0.662043;RPB=0.923116;MQB=0.249352;MQSB=0.778801;BQB=0.726149;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,7,2;MQ=56;FQ=91.0158;PV4=0.58042,1,0.0286032,1 GT:PL 0/1:224,0,118
Scaffold_1 941365 . T C 225.009 PASS DP=21;VDB=0.504358;SGB=-0.676189;RPB=0.998397;MQB=0.0767774;MQSB=0.994413;BQB=0.993603;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,6,5;MQ=55;FQ=98.0159;PV4=1,1,0.0121627,1 GT:PL 0/1:255,0,125
Scaffold_1 941399 . A G 221.009 PASS DP=17;VDB=0.407317;SGB=-0.680642;RPB=0.935966;MQB=0.0528036;MQSB=0.951579;BQB=0.479364;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,5,7;MQ=53;FQ=72.0156;PV4=0.569231,0.103142,0.0259587,1 GT:PL 0/1:251,0,99
Scaffold_1 941480 . G A 118.008 PASS DP=20;VDB=0.768162;SGB=-0.662043;RPB=0.603142;MQB=0.00385331;MQSB=0.284292;BQB=0.86931;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,1,8;MQ=50;FQ=121.016;PV4=0.105769,0.0991344,0.000303248,1 GT:PL 0/1:148,0,198
Scaffold_1 941483 . A G 142.008 PASS DP=18;VDB=0.768162;SGB=-0.662043;RPB=0.894839;MQB=0.00632972;MQSB=0.729713;BQB=0.972604;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,1,8;MQ=50;FQ=130.847;PV4=0.525275,0.31647,0.000684533,0.347782 GT:PL 0/1:172,0,158
Scaffold_1 941487 . C T 142.008 PASS DP=18;VDB=0.806617;SGB=-0.670168;RPB=0.958048;MQB=0.0029283;MQSB=0.493254;BQB=0.958048;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,1,9;MQ=51;FQ=144.973;PV4=0.25,0.266604,0.000624305,0.1915 GT:PL 0/1:172,0,192
Scaffold_1 941489 . G A 152.008 PASS DP=18;VDB=0.812497;SGB=-0.670168;RPB=0.958048;MQB=0.0029283;MQSB=0.493254;BQB=0.817757;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,1,9;MQ=51;FQ=154.804;PV4=0.25,0.112884,0.000624305,0.180017 GT:PL 0/1:182,0,195
Scaffold_1 941500 . T C 94.0077 PASS DP=18;VDB=0.798293;SGB=-0.636426;RPB=0.643095;MQB=0.0401934;MQSB=1;BQB=0.924449;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,0,7;MQ=49;FQ=96.0426;PV4=0.363636,0.107472,0.00921493,0.476239 GT:PL 0/1:124,0,130
Scaffold_1 941508 . G A 116.008 PASS DP=14;VDB=0.26936;SGB=-0.636426;RPB=0.143152;MQB=0.0102252;MQSB=0.635922;BQB=0.777113;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,2,5;MQ=49;FQ=119.016;PV4=0.592075,0.102053,1.40932e-05,0.382298 GT:PL 0/1:146,0,188
Scaffold_1 941536 . C A 148.008 PASS DP=15;VDB=0.716595;SGB=-0.651104;RPB=0.118442;MQB=0.00822975;MQSB=0.99005;BQB=0.927743;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,2,6;MQ=50;FQ=130.973;PV4=1,0.330788,0.00013109,1 GT:PL 0/1:178,0,158
Scaffold_1 941549 . G A 115.008 PASS DP=17;VDB=0.732068;SGB=-0.636426;RPB=0.360111;MQB=0.0857407;MQSB=0.977751;BQB=0.885987;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,1,6;MQ=49;FQ=117.948;PV4=0.559441,0.360091,0.0933947,1 GT:PL 0/1:145,0,163
Scaffold_1 941553 . T C 155.008 PASS DP=15;VDB=0.92643;SGB=-0.670168;RPB=0.236928;MQB=0.0183156;MQSB=0.738968;BQB=0.913931;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,3,7;MQ=46;FQ=76.0156;PV4=1,0.220827,0.00307653,1 GT:PL 0/1:185,0,103
Scaffold_1 941554 . G A 154.008 PASS DP=16;VDB=0.726608;SGB=-0.651104;RPB=0.84246;MQB=0.213769;MQSB=0.697593;BQB=0.50373;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,2,6;MQ=46;FQ=80.0157;PV4=1,0.399245,0.178951,1 GT:PL 0/1:184,0,107
Scaffold_1 941641 . A T 207.009 PASS DP=14;VDB=0.0532469;SGB=-0.670168;RPB=0.597928;MQB=0.207008;MQSB=0.635922;BQB=0.944459;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,5,5;MQ=51;FQ=34.0168;PV4=0.230769,1,0.0404879,0.393792 GT:PL 0/1:237,0,61
Scaffold_1 941709 . A T 81.0076 PASS DP=9;VDB=0.507898;SGB=-0.590765;RPB=0.4;MQB=0.4;MQSB=0.9;BQB=0.4;MQ0F=0;AF1=0.500001;AC1=1;DP4=0,2,2,3;MQ=50;FQ=28.0218;PV4=1,0.152329,0.128569,0.110594 GT:PL 0/1:111,0,55
Scaffold_1 941713 . T A 69.0074 PASS DP=7;VDB=0.585652;SGB=-0.556411;RPB=0.5;MQB=0.25;MQSB=0.75;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=0,2,2,2;MQ=50;FQ=31.0181;PV4=0.466667,0.165823,0.0882751,0.090703 GT:PL 0/1:99,0,58
Scaffold_1 941851 . C T 26.5224 PASS DP=5;VDB=0.740842;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,4;MQ=27;FQ=-38.9864 GT:PL 1/1:59,12,0
Scaffold_1 941859 . T C 38.5134 PASS DP=5;VDB=0.730433;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,0,4;MQ=27;FQ=-38.9864 GT:PL 1/1:71,12,0
Scaffold_1 941860 . A G 30.4589 PASS DP=5;VDB=0.730433;SGB=-0.556411;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,1,0,4;MQ=24;FQ=-33.9875;PV4=1,0.136114,1,0.401221 GT:PL 1/1:62,7,0
Scaffold_1 942403 . G C 22.0341 PASS DP=8;VDB=0.6;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=0.992367;BQB=0.833333;MQ0F=0;AF1=0.499998;AC1=1;DP4=2,4,2,0;MQ=60;FQ=25.0286;PV4=0.428571,1,1,0.29929 GT:PL 0/1:52,0,171
Scaffold_1 942413 . G A 22.0341 PASS DP=8;VDB=0.6;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=0.992367;BQB=0.666667;MQ0F=0;AF1=0.499998;AC1=1;DP4=2,4,2,0;MQ=60;FQ=25.0286;PV4=0.428571,1,1,1 GT:PL 0/1:52,0,154
Scaffold_1 942429 . A C 31.0104 PASS DP=7;VDB=0.6;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,2,0;MQ=60;FQ=34.0099;PV4=0.4,1,1,1 GT:PL 0/1:61,0,89
Scaffold_1 942536 . A G 14.176 PASS DP=10;VDB=0.98;SGB=-0.453602;RPB=1;MQB=0.5;MQSB=0.895781;BQB=0.75;MQ0F=0;AF1=0.49999;AC1=1;DP4=3,5,1,1;MQ=59;FQ=17.1004;PV4=1,1,0.0176326,0.0506729 GT:PL 0/1:44,0,182
Scaffold_1 942640 . C A 12.272 PASS DP=9;VDB=0.52;SGB=-0.453602;RPB=1;MQB=0;MQSB=0.487298;BQB=0.714286;MQ0F=0;AF1=0.499984;AC1=1;DP4=5,2,0,2;MQ=57;FQ=15.1496;PV4=0.166667,0.219859,0,1 GT:PL 0/1:42,0,187
Scaffold_1 942660 . A G 19.061 PASS DP=10;VDB=0.56;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.62023;BQB=1;MQ0F=0;AF1=0.499997;AC1=1;DP4=4,2,0,2;MQ=56;FQ=22.0421;PV4=0.428571,1,0,1 GT:PL 0/1:49,0,167
Scaffold_1 946772 . G T 16.1143 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.285714;MQB=1;MQSB=0.924584;BQB=1;MQ0F=0;AF1=0.499994;AC1=1;DP4=6,1,0,2;MQ=60;FQ=19.069;PV4=0.0833333,1,1,1 GT:PL 0/1:46,0,169
Scaffold_1 965010 . C T 10.42 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.833333;MQB=1;MQSB=1;BQB=0.833333;MQ0F=0;AF1=0.499975;AC1=1;DP4=2,4,0,2;MQ=60;FQ=13.2265;PV4=1,0.323101,1,1 GT:PL 0/1:40,0,165
Scaffold_1 973317 . G T 10.42 PASS DP=12;VDB=0.02;SGB=-0.453602;RPB=0.888889;MQB=1;MQSB=0.950952;BQB=0.5;MQ0F=0;AF1=0.499975;AC1=1;DP4=4,5,2,0;MQ=60;FQ=13.2265;PV4=0.454545,0.0119282,1,1 GT:PL 0/1:40,0,244
Scaffold_1 975299 . A T 17.0924 PASS DP=10;VDB=0.28;SGB=-0.453602;RPB=0.428571;MQB=1;MQSB=0.924584;BQB=0.428571;MQ0F=0;AF1=0.499995;AC1=1;DP4=5,2,1,1;MQ=60;FQ=20.058;PV4=1,0.313142,1,1 GT:PL 0/1:47,0,187
Scaffold_1 975331 . T A 34.0087 PASS DP=12;VDB=0.137328;SGB=-0.511536;RPB=0.979382;MQB=1;MQSB=0.950952;BQB=0.594025;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,2,1;MQ=60;FQ=37.016;PV4=1,0.18617,1,1 GT:PL 0/1:64,0,210
Scaffold_1 975336 . C T 36.0081 PASS DP=12;VDB=0.142856;SGB=-0.511536;RPB=0.824834;MQB=0.916482;MQSB=1.00775;BQB=0.366593;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,2,1;MQ=60;FQ=39.0157;PV4=1,0.0131402,1,1 GT:PL 0/1:66,0,201
Scaffold_1 975418 . C T 92.0077 PASS DP=19;VDB=0.918297;SGB=-0.556411;RPB=0.99005;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,8,2,2;MQ=60;FQ=95.0159;PV4=0.52048,1,1,0.420217 GT:PL 0/1:122,0,238
Scaffold_1 975432 . G T 79.0075 PASS DP=19;VDB=0.714437;SGB=-0.556411;RPB=0.851925;MQB=1;MQSB=1;BQB=0.730444;MQ0F=0;AF1=0.5;AC1=1;DP4=2,11,2,2;MQ=60;FQ=82.0157;PV4=0.218908,1,1,1 GT:PL 0/1:109,0,206
Scaffold_1 975461 . G C 117.008 PASS DP=18;VDB=0.262259;SGB=-0.590765;RPB=0.761685;MQB=1;MQSB=1;BQB=0.310971;MQ0F=0;AF1=0.5;AC1=1;DP4=3,9,3,2;MQ=60;FQ=120.016;PV4=0.280058,1,1,1 GT:PL 0/1:147,0,231
Scaffold_1 975496 . C A 126.008 PASS DP=16;VDB=0.262259;SGB=-0.590765;RPB=0.448332;MQB=1;MQSB=0.966012;BQB=0.83527;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,3,2;MQ=60;FQ=129.016;PV4=1,1,1,0.464442 GT:PL 0/1:156,0,225
Scaffold_1 975515 . T C 81.0075 PASS DP=16;VDB=0.193383;SGB=-0.556411;RPB=0.188162;MQB=1;MQSB=1;BQB=0.900862;MQ0F=0;AF1=0.5;AC1=1;DP4=4,7,3,1;MQ=60;FQ=84.0157;PV4=0.282051,1,1,1 GT:PL 0/1:111,0,245
Scaffold_1 975546 . A T 39.0076 PASS DP=15;VDB=0.220755;SGB=-0.511536;RPB=0.177538;MQB=1;MQSB=0.961166;BQB=0.914584;MQ0F=0;AF1=0.5;AC1=1;DP4=5,5,2,1;MQ=60;FQ=42.0155;PV4=1,1,1,0.177157 GT:PL 0/1:69,0,228
Scaffold_1 975647 . C A 32.0097 PASS DP=10;VDB=0.131948;SGB=-0.511536;RPB=0.0916482;MQB=0.916482;MQSB=0.952347;BQB=0.733186;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,1,2;MQ=60;FQ=35.0165;PV4=1,0.0664005,1,0.363913 GT:PL 0/1:62,0,203
Scaffold_1 975667 . G T 59.0073 PASS DP=8;VDB=0.131948;SGB=-0.511536;RPB=0.150134;MQB=0.900802;MQSB=0.900802;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,1,2;MQ=60;FQ=62.0154;PV4=0.464286,1,1,0.44106 GT:PL 0/1:89,0,137
Scaffold_1 975712 . A G 79.0075 PASS DP=13;VDB=0.26019;SGB=-0.556411;RPB=0.953497;MQB=1;MQSB=1;BQB=0.180092;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,1,3;MQ=60;FQ=82.0157;PV4=1,1,1,1 GT:PL 0/1:109,0,209
Scaffold_1 975779 . C G 59.0073 PASS DP=8;VDB=0.617121;SGB=-0.511536;RPB=0.900802;MQB=0.900802;MQSB=0.900802;BQB=0.750668;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,2,1;MQ=60;FQ=62.0152;PV4=0.464286,1,1,0.109972 GT:PL 0/1:89,0,131
Scaffold_1 975789 . T A 34.0087 PASS DP=7;VDB=0.56;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=0,4,1,1;MQ=60;FQ=37.0156;PV4=0.333333,1,1,1 GT:PL 0/1:64,0,105
Scaffold_1 975791 . A T 34.0087 PASS DP=7;VDB=0.56;SGB=-0.453602;RPB=0.25;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,1,1;MQ=60;FQ=37.0159;PV4=1,1,1,1 GT:PL 0/1:64,0,111
Scaffold_1 976636 . T G 45.0072 PASS DP=10;VDB=0.681436;SGB=-0.511536;RPB=0.809011;MQB=0.809011;MQSB=0.857143;BQB=0.346719;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,0;MQ=58;FQ=48.0153;PV4=0.5,1,0.0852353,0.403131 GT:PL 0/1:75,0,143
Scaffold_1 976643 . G A 48.0072 PASS DP=9;VDB=0.681436;SGB=-0.511536;RPB=0.809011;MQB=0.809011;MQSB=0.857143;BQB=0.462292;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,0;MQ=58;FQ=51.0153;PV4=0.5,1,0.0852353,1 GT:PL 0/1:78,0,158
Scaffold_1 976656 . T A 45.0072 PASS DP=9;VDB=0.698947;SGB=-0.511536;RPB=0.809011;MQB=0.809011;MQSB=0.857143;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,3,0;MQ=58;FQ=48.0153;PV4=0.5,0.313142,0.0852353,1 GT:PL 0/1:75,0,174
Scaffold_1 976672 . T G 25.0205 PASS DP=8;VDB=0.1;SGB=-0.453602;RPB=0.9;MQB=1;MQSB=1;BQB=0.4;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,2,2,0;MQ=60;FQ=28.0219;PV4=1,1,1,1 GT:PL 0/1:55,0,137
Scaffold_1 976695 . G A 79.0075 PASS DP=9;VDB=0.275912;SGB=-0.556411;RPB=0.405132;MQB=1.01283;MQSB=1.01283;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,1;MQ=60;FQ=48.0136;PV4=0.485714,1,1,0.0521755 GT:PL 0/1:109,0,75
Scaffold_1 976705 . C A 88.0087 PASS DP=9;VDB=0.400625;SGB=-0.590765;RPB=0.4;MQB=1;MQSB=1;BQB=0.6;MQ0F=0;AF1=0.500125;AC1=1;DP4=1,1,4,1;MQ=60;FQ=6.98503;PV4=1,1,1,0.219178 GT:PL 0/1:118,0,33
Scaffold_1 976739 . T C 103.008 PASS DP=12;VDB=0.324419;SGB=-0.590765;RPB=0.649731;MQB=0.974597;MQSB=0.974597;BQB=0.89338;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,4,1;MQ=60;FQ=78.0088;PV4=0.206349,1,1,1 GT:PL 0/1:133,0,105
Scaffold_1 976743 . T G 85.0076 PASS DP=12;VDB=0.308315;SGB=-0.590765;RPB=0.428556;MQB=0.952347;MQSB=1.00775;BQB=0.666643;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,4,1;MQ=60;FQ=85.8913;PV4=0.52381,1,1,1 GT:PL 0/1:115,0,117
Scaffold_1 976831 . T A 87.0076 PASS DP=12;VDB=0.66971;SGB=-0.556411;RPB=0.895781;MQB=1.00775;MQSB=0.952347;BQB=0.503877;MQ0F=0;AF1=0.5;AC1=1;DP4=4,2,1,3;MQ=60;FQ=90.0103;PV4=0.52381,1,1,1 GT:PL 0/1:117,0,146
Scaffold_1 976838 . A C 82.0076 PASS DP=11;VDB=0.658104;SGB=-0.556411;RPB=0.868321;MQB=0.992367;MQSB=0.992367;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,1,3;MQ=60;FQ=84.2256;PV4=0.485714,0.188461,1,1 GT:PL 0/1:112,0,119
Scaffold_1 976878 . C T 107.008 PASS DP=14;VDB=0.883497;SGB=-0.616816;RPB=0.931779;MQB=0.982603;MQSB=1;BQB=0.864013;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,1,5;MQ=60;FQ=109.999;PV4=0.545455,0.262113,1,0.0447479 GT:PL 0/1:137,0,161
Scaffold_1 976898 . T A 77.0075 PASS DP=10;VDB=0.187998;SGB=-0.590765;RPB=0.761877;MQB=0.952347;MQSB=1;BQB=0.761877;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,0,5;MQ=60;FQ=80.0139;PV4=0.444444,0.206558,1,1 GT:PL 0/1:107,0,141
Scaffold_1 976908 . G A 90.0077 PASS DP=10;VDB=0.138089;SGB=-0.590765;RPB=0.761877;MQB=0.952347;MQSB=0.916482;BQB=0.952347;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,0,5;MQ=60;FQ=93.0089;PV4=0.166667,1,1,1 GT:PL 0/1:120,0,148
Scaffold_1 977869 . G A 16.1143 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=0.861511;BQB=0.875;MQ0F=0;AF1=0.499994;AC1=1;DP4=1,3,2,0;MQ=60;FQ=19.069;PV4=0.4,0.361192,1,1 GT:PL 0/1:46,0,117
Scaffold_1 978610 . C A 25.0205 PASS DP=9;VDB=0.52;SGB=-0.453602;RPB=0.928571;MQB=1;MQSB=0.974597;BQB=0.714286;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,4,1,1;MQ=60;FQ=28.0219;PV4=1,1,1,1 GT:PL 0/1:55,0,189
Scaffold_1 988172 . C T 37.4208 PASS DP=10;VDB=0.17915;SGB=-0.511536;RPB=0.115573;MQB=0.115573;MQSB=0.857143;BQB=0.809011;MQ0F=0.3;AF1=0.555409;AC1=1;DP4=5,1,2,1;MQ=25;FQ=-20.029;PV4=1,0.441104,1,1 GT:PL 0/1:67,0,7
Scaffold_1 998609 . G A 95.4558 PASS DP=7;VDB=0.858134;SGB=-0.590765;RPB=0.5;MQB=0;MQSB=0.4;BQB=0.5;MQ0F=0;AF1=1;AC1=2;DP4=2,0,3,2;MQ=46;FQ=-33.9875;PV4=1,1,1,0.237975 GT:PL 1/1:127,7,0
Scaffold_1 998618 . G A 84.7891 PASS DP=6;VDB=0.14314;SGB=-0.590765;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=1,0,4,1;MQ=43;FQ=-36.9867;PV4=1,1,1,0.352 GT:PL 1/1:117,10,0
Scaffold_1 998843 . C G 43.1254 PASS DP=4;VDB=0.411594;SGB=-0.511536;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,1,2,1;MQ=36;FQ=-31.9885;PV4=1,1,1,1 GT:PL 1/1:74,5,0
Scaffold_1 999046 . C T 47.2632 PASS DP=8;VDB=0.0967644;SGB=-0.636426;RPB=1;MQB=1;MQSB=0.62023;BQB=1;MQ0F=0.125;AF1=1;AC1=2;DP4=0,1,4,3;MQ=23;FQ=-41.9862;PV4=1,0.177959,1,1 GT:PL 1/1:80,15,0
Scaffold_1 999130 . T C 29.2681 PASS DP=6;VDB=0.709369;SGB=-0.590765;MQSB=0.333333;MQ0F=0.166667;AF1=1;AC1=2;DP4=0,0,3,2;MQ=23;FQ=-41.9862 GT:PL 1/1:62,15,0
Scaffold_1 999144 . T G 93.1329 PASS DP=6;VDB=0.992051;SGB=-0.616816;MQSB=1;MQ0F=0.166667;AF1=1;AC1=2;DP4=0,0,4,2;MQ=34;FQ=-44.9861 GT:PL 1/1:126,18,0
Scaffold_1 999172 . T A 55.5131 PASS DP=4;VDB=0.686815;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=41;FQ=-38.9864 GT:PL 1/1:88,12,0
Scaffold_1 1000270 . G A 161.134 PASS DP=9;VDB=0.50238;SGB=-0.651104;RPB=1;MQB=1;MQSB=0.730948;BQB=1;MQ0F=0.111111;AF1=1;AC1=2;DP4=1,0,3,5;MQ=43;FQ=-44.9861;PV4=0.444444,0.299952,1,0.355869 GT:PL 1/1:194,18,0
Scaffold_1 1000292 . A G 157.79 PASS DP=13;VDB=0.897035;SGB=-0.651104;RPB=0.716531;MQB=0.0497871;MQSB=0.564628;BQB=0.920044;MQ0F=0.153846;AF1=1;AC1=2;DP4=2,1,4,4;MQ=41;FQ=-36.9867;PV4=1,0.19812,1,0.476797 GT:PL 1/1:190,10,0
Scaffold_1 1000316 . C T 100.008 PASS DP=12;VDB=0.548401;SGB=-0.590765;RPB=0.666643;MQB=0.0952347;MQSB=0.503877;BQB=0.857112;MQ0F=0.166667;AF1=0.50001;AC1=1;DP4=4,1,2,3;MQ=34;FQ=17.1004;PV4=0.52381,0.171389,1,1 GT:PL 0/1:130,0,44
Scaffold_1 1000329 . G A 112.008 PASS DP=12;VDB=0.407747;SGB=-0.616816;RPB=0.542126;MQB=0.186356;MQSB=0.40926;BQB=0.542126;MQ0F=0.166667;AF1=0.5;AC1=1;DP4=4,2,3,3;MQ=35;FQ=47.0153;PV4=1,0.0680051,1,0.261705 GT:PL 0/1:142,0,74
Scaffold_1 1000379 . C T 106.008 PASS DP=29;VDB=0.924763;SGB=-0.651104;RPB=0.277182;MQB=0.0173325;MQSB=0.0445088;BQB=0.460158;MQ0F=0.241379;AF1=0.5;AC1=1;DP4=19,1,5,3;MQ=26;FQ=86.9884;PV4=0.0581197,0.0741935,1,0.236295 GT:PL 0/1:136,0,114
Scaffold_1 1000430 . G A 129.008 PASS DP=35;VDB=0.105308;SGB=-0.676189;RPB=0.857857;MQB=0.0693134;MQSB=0.333887;BQB=0.997087;MQ0F=0.342857;AF1=0.5;AC1=1;DP4=21,1,7,4;MQ=24;FQ=62.0154;PV4=0.0325362,1,1,0.324061 GT:PL 0/1:159,0,89
Scaffold_1 1000479 . A G 121.008 PASS DP=33;VDB=0.205158;SGB=-0.651104;RPB=0.424435;MQB=0.00124851;MQSB=0.206943;BQB=0.951294;MQ0F=0.333333;AF1=0.5;AC1=1;DP4=22,1,3,5;MQ=28;FQ=60.0154;PV4=0.00178736,1,1,1 GT:PL 0/1:151,0,87
Scaffold_1 1000504 . C T 79.0075 PASS DP=24;VDB=0.0794599;SGB=-0.616816;RPB=0.912409;MQB=0.00884387;MQSB=0.352032;BQB=0.57564;MQ0F=0.333333;AF1=0.5;AC1=1;DP4=14,1,2,4;MQ=28;FQ=46.0142;PV4=0.0113519,0.0638907,1,1 GT:PL 0/1:109,0,73
Scaffold_1 1000644 . A C 67.0074 PASS DP=32;VDB=0.0435222;SGB=-0.616816;RPB=0.000941777;MQB=0.000941777;MQSB=0.0944725;BQB=0.994638;MQ0F=0.15625;AF1=0.5;AC1=1;DP4=4,20,5,1;MQ=34;FQ=70.0155;PV4=0.0045977,0.33434,1,1 GT:PL 0/1:97,0,160
Scaffold_1 1000697 . C T 39.0076 PASS DP=33;VDB=0.0421576;SGB=-0.662043;RPB=0.891738;MQB=0.2832;MQSB=0.225866;BQB=0.872525;MQ0F=0.30303;AF1=0.5;AC1=1;DP4=6,16,0,9;MQ=25;FQ=42.0154;PV4=0.144748,0.222184,1,1 GT:PL 0/1:69,0,119
Scaffold_1 1000957 . G A 222.003 PASS DP=12;VDB=0.896471;SGB=-0.676189;MQSB=0.950952;MQ0F=0;AF1=1;AC1=2;DP4=0,0,5,6;MQ=60;FQ=-59.9861 GT:PL 1/1:255,33,0
Scaffold_1 1001524 . G A 168.094 PASS DP=10;VDB=0.0585364;SGB=-0.636426;RPB=0.571429;MQB=0;MQSB=0.577865;BQB=1;MQ0F=0;AF1=0.510155;AC1=1;DP4=2,0,4,3;MQ=43;FQ=-13.1986;PV4=0.5,1,1,1 GT:PL 0/1:198,0,14
Scaffold_1 1001547 . T G 150.008 PASS DP=15;VDB=0.219617;SGB=-0.636426;RPB=0.0891522;MQB=0.0128508;MQSB=0.188162;BQB=0.97357;MQ0F=0.133333;AF1=0.5;AC1=1;DP4=8,0,3,4;MQ=36;FQ=40.0156;PV4=0.025641,0.420019,1,1 GT:PL 0/1:180,0,67
Scaffold_1 1001586 . C T 96.0077 PASS DP=16;VDB=0.898035;SGB=-0.616816;RPB=0.868815;MQB=0.119226;MQSB=0.112836;BQB=0.984496;MQ0F=0.25;AF1=0.5;AC1=1;DP4=9,0,2,4;MQ=28;FQ=40.0156;PV4=0.010989,1,1,0.480961 GT:PL 0/1:126,0,67
Scaffold_1 1001629 . C A 13.2188 PASS DP=16;VDB=0.509904;SGB=-0.511536;RPB=0.177538;MQB=0.0740088;MQSB=0.207131;BQB=0.239651;MQ0F=0.3125;AF1=0.499988;AC1=1;DP4=9,1,0,3;MQ=26;FQ=16.0956;PV4=0.013986,0.110207,1,1 GT:PL 0/1:43,0,65
Scaffold_1 1001658 . C T 72.1766 PASS DP=15;VDB=0.943125;SGB=-0.616816;RPB=0.695312;MQB=0.0102252;MQSB=0.0306755;BQB=0.112477;MQ0F=0.333333;AF1=0.520679;AC1=1;DP4=6,1,1,5;MQ=26;FQ=-16.0937;PV4=0.0291375,0.0489486,1,0.170608 GT:PL 0/1:102,0,11
Scaffold_1 1001768 . T A 79.0075 PASS DP=13;VDB=0.97957;SGB=-0.590765;RPB=0.908075;MQB=0.0452104;BQB=0.765017;MQ0F=0.230769;AF1=0.5;AC1=1;DP4=0,8,0,5;MQ=30;FQ=42.015;PV4=1,1,1,0.332024 GT:PL 0/1:109,0,69
Scaffold_1 1001795 . A T 40.0075 PASS DP=12;VDB=0.745967;SGB=-0.556411;RPB=0.913799;MQB=0.072179;BQB=0.397295;MQ0F=0.25;AF1=0.5;AC1=1;DP4=0,8,0,4;MQ=29;FQ=30.753;PV4=1,0.0549979,1,0.120286 GT:PL 0/1:70,0,58
Scaffold_1 1001806 . G A 58.0073 PASS DP=12;VDB=0.148314;SGB=-0.590765;RPB=0.896474;MQB=0.13642;BQB=0.253351;MQ0F=0.25;AF1=0.5;AC1=1;DP4=0,7,0,5;MQ=29;FQ=36.0025;PV4=1,0.00911519,1,0.127491 GT:PL 0/1:88,0,63
Scaffold_1 1001881 . T C 40.0075 PASS DP=11;VDB=0.78654;SGB=-0.511536;RPB=0.577865;MQB=0.346719;MQSB=1;BQB=0.809011;MQ0F=0.272727;AF1=0.5;AC1=1;DP4=0,6,1,2;MQ=28;FQ=32.6035;PV4=0.333333,1,1,1 GT:PL 0/1:70,0,60
Scaffold_1 1001917 . C A 27.0206 PASS DP=3;VDB=0.48;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=1;MQ0F=0.333333;AF1=1;AC1=2;DP4=0,1,1,1;MQ=27;FQ=-29.9901;PV4=1,0.333333,1,1 GT:PL 1/1:57,3,0
Scaffold_1 1002346 . G A 14.176 PASS DP=8;VDB=0.36;SGB=-0.453602;RPB=0.3;MQB=1;MQSB=0.4;BQB=0.5;MQ0F=0.125;AF1=0.49999;AC1=1;DP4=4,1,1,1;MQ=32;FQ=17.0998;PV4=1,0.0586934,1,0.346677 GT:PL 0/1:44,0,83
Scaffold_1 1002647 . A G 48.0072 PASS DP=21;VDB=0.624078;SGB=-0.651104;RPB=0.769328;MQB=0.102067;MQSB=0.0681997;BQB=0.511029;MQ0F=0.0952381;AF1=0.5;AC1=1;DP4=12,1,1,7;MQ=21;FQ=37.8035;PV4=0.000515996,1,1,1 GT:PL 0/1:78,0,65
Scaffold_1 1002960 . G A 24.1311 PASS DP=30;VDB=0.293521;SGB=-0.662043;RPB=0.0102937;MQB=0.00760686;MQSB=0.973955;BQB=0.906646;MQ0F=0.533333;AF1=0.512851;AC1=1;DP4=10,9,4,5;MQ=14;FQ=-14.156;PV4=1,0.0579184,1,0.0394777 GT:PL 0/1:54,0,13
Scaffold_1 1003044 . G A 16.1143 PASS DP=23;VDB=0.0931079;SGB=-0.636426;RPB=0.0615319;MQB=0.550519;MQSB=0.323897;BQB=0.760398;MQ0F=0.26087;AF1=0.499994;AC1=1;DP4=11,4,3,4;MQ=17;FQ=18.9843;PV4=0.342621,1,1,1 GT:PL 0/1:46,0,63
Scaffold_1 1003495 . C T 45.0073 PASS DP=11;VDB=0.00459396;SGB=-0.590765;RPB=0.0476173;MQB=0.666643;MQSB=0.857112;BQB=0.952347;MQ0F=0.181818;AF1=0.500005;AC1=1;DP4=1,4,4,1;MQ=26;FQ=20.0512;PV4=0.206349,0.317743,1,1 GT:PL 0/1:75,0,47
Scaffold_1 1003531 . C T 30.0112 PASS DP=16;VDB=0.0107983;SGB=-0.556411;RPB=0.054101;MQB=0.146957;MQSB=1;BQB=0.579578;MQ0F=0.3125;AF1=0.5;AC1=1;DP4=3,8,4,0;MQ=22;FQ=31.8246;PV4=0.025641,1,1,1 GT:PL 0/1:60,0,65
Scaffold_1 1003569 . C T 51.0072 PASS DP=19;VDB=0.250641;SGB=-0.636426;RPB=0.210248;MQB=0.743558;MQSB=0.751866;BQB=0.902552;MQ0F=0.263158;AF1=0.5;AC1=1;DP4=5,6,3,4;MQ=22;FQ=53.8801;PV4=1,1,1,0.493497 GT:PL 0/1:81,0,96
Scaffold_1 1003572 . C T 35.0083 PASS DP=19;VDB=0.0395055;SGB=-0.590765;RPB=0.039122;MQB=0.180092;MQSB=0.849308;BQB=0.125646;MQ0F=0.263158;AF1=0.5;AC1=1;DP4=5,9,4,1;MQ=22;FQ=38.0072;PV4=0.140867,0.0327721,1,1 GT:PL 0/1:65,0,92
Scaffold_1 1003644 . G A 67.0087 PASS DP=17;VDB=0.579238;SGB=-0.662043;RPB=0.352866;MQB=0.77073;MQSB=0.981652;BQB=0.846482;MQ0F=0.352941;AF1=0.500158;AC1=1;DP4=5,3,4,5;MQ=20;FQ=6.20452;PV4=0.637186,0.100852,1,0.0880083 GT:PL 0/1:97,0,32
Scaffold_1 1003658 . G C 23.0286 PASS DP=17;VDB=0.140599;SGB=-0.590765;RPB=0.419767;MQB=0.200778;MQSB=0.922371;BQB=0.419767;MQ0F=0.411765;AF1=0.500015;AC1=1;DP4=8,4,3,2;MQ=20;FQ=14.8282;PV4=1,1,1,1 GT:PL 0/1:53,0,42
Scaffold_1 1003674 . G A 15.1417 PASS DP=18;VDB=0.281254;SGB=-0.556411;RPB=0.960728;MQB=0.460409;MQSB=0.79079;BQB=0.960728;MQ0F=0.333333;AF1=0.499992;AC1=1;DP4=10,3,2,2;MQ=20;FQ=17.9769;PV4=0.537815,1,1,1 GT:PL 0/1:45,0,61
Scaffold_1 1003730 . A G 35.0083 PASS DP=23;VDB=0.405004;SGB=-0.590765;RPB=0.959099;MQB=0.0759162;MQSB=0.188162;BQB=0.918304;MQ0F=0.347826;AF1=0.5;AC1=1;DP4=13,3,1,4;MQ=20;FQ=33.8924;PV4=0.0251118,0.241027,1,1 GT:PL 0/1:65,0,63
Scaffold_1 1003760 . G A 58.0073 PASS DP=20;VDB=0.101802;SGB=-0.636426;RPB=0.00658921;MQB=0.0894312;MQSB=0.334958;BQB=0.674523;MQ0F=0.4;AF1=0.500003;AC1=1;DP4=8,4,4,3;MQ=19;FQ=23.0359;PV4=1,1,1,0.226964 GT:PL 0/1:88,0,50
Scaffold_1 1004117 . T C 29.0124 PASS DP=15;VDB=0.0674392;SGB=-0.616816;RPB=0.875173;MQB=0.509156;MQSB=0.0577239;BQB=0.77718;MQ0F=0.466667;AF1=0.500006;AC1=1;DP4=4,4,4,2;MQ=19;FQ=18.8593;PV4=0.62704,0.310024,1,1 GT:PL 0/1:59,0,46
Scaffold_1 1004337 . G A 26.0177 PASS DP=27;VDB=0.111502;SGB=-0.616816;RPB=0.81401;MQB=0.857712;MQSB=0.576361;BQB=0.896871;MQ0F=0.148148;AF1=0.499999;AC1=1;DP4=16,5,5,1;MQ=33;FQ=29.0205;PV4=1,0.365692,1,1 GT:PL 0/1:56,0,208
Scaffold_1 1004345 . C T 14.176 PASS DP=26;VDB=0.0987508;SGB=-0.651104;RPB=0.750688;MQB=0.64766;MQSB=0.775364;BQB=0.507259;MQ0F=0.115385;AF1=0.49999;AC1=1;DP4=14,3,6,2;MQ=34;FQ=17.1004;PV4=1,1,0.153947,1 GT:PL 0/1:44,0,225
Scaffold_1 1004382 . G A 54.0072 PASS DP=28;VDB=0.0588086;SGB=-0.662043;RPB=0.652391;MQB=0.171358;MQSB=0.324652;BQB=0.978458;MQ0F=0.107143;AF1=0.5;AC1=1;DP4=10,5,8,1;MQ=34;FQ=57.0154;PV4=0.350947,0.449659,0.0354113,1 GT:PL 0/1:84,0,218
Scaffold_1 1004422 . G A 36.0081 PASS DP=30;VDB=0.394383;SGB=-0.616816;RPB=0.929717;MQB=0.747144;MQSB=0.277141;BQB=0.950652;MQ0F=0.1;AF1=0.5;AC1=1;DP4=12,7,5,1;MQ=32;FQ=39.0157;PV4=0.623715,0.26547,1,0.267756 GT:PL 0/1:66,0,226
Scaffold_1 1004431 . C T 96.0077 PASS DP=28;VDB=0.160844;SGB=-0.670168;RPB=0.930132;MQB=0.827787;MQSB=0.295461;BQB=0.679965;MQ0F=0.107143;AF1=0.5;AC1=1;DP4=7,7,9,1;MQ=35;FQ=99.0159;PV4=0.0790759,1,1,1 GT:PL 0/1:126,0,188
Scaffold_1 1004437 . C T 25.0205 PASS DP=26;VDB=0.308315;SGB=-0.590765;RPB=0.674676;MQB=0.839542;MQSB=0.178438;BQB=0.995153;MQ0F=0.115385;AF1=0.499999;AC1=1;DP4=7,6,4,1;MQ=34;FQ=28.0219;PV4=0.595588,0.461652,1,1 GT:PL 0/1:55,0,171
Scaffold_1 1004453 . C T 12.272 PASS DP=25;VDB=0.610267;SGB=-0.590765;RPB=0.488331;MQB=0.946915;MQSB=0.769328;BQB=0.884505;MQ0F=0.08;AF1=0.499984;AC1=1;DP4=10,6,3,2;MQ=31;FQ=15.1496;PV4=1,1,0.335681,1 GT:PL 0/1:42,0,193
Scaffold_1 1004461 . T C 19.061 PASS DP=23;VDB=0.152777;SGB=-0.556411;RPB=0.606531;MQB=0.486752;MQSB=0.825504;BQB=0.995012;MQ0F=0.0869565;AF1=0.499997;AC1=1;DP4=8,7,3,1;MQ=31;FQ=22.0421;PV4=0.602683,0.461042,1,0.353523 GT:PL 0/1:49,0,162
Scaffold_1 1004486 . T C 32.0097 PASS DP=21;VDB=0.51241;SGB=-0.590765;RPB=0.157651;MQB=0.989128;MQSB=0.965097;BQB=0.76088;MQ0F=0.190476;AF1=0.5;AC1=1;DP4=7,6,3,2;MQ=28;FQ=35.0165;PV4=1,1,1,0.309236 GT:PL 0/1:62,0,155
Scaffold_1 1004608 . T C 65.0073 PASS DP=33;VDB=0.25494;SGB=-0.590765;RPB=0.998203;MQB=0.0562156;MQSB=0.86388;BQB=0.947032;MQ0F=0.181818;AF1=0.5;AC1=1;DP4=9,14,2,3;MQ=31;FQ=68.0155;PV4=1,1,1,0.409373 GT:PL 0/1:95,0,233
Scaffold_1 1004640 . G A 23.0285 PASS DP=30;VDB=0.77747;SGB=-0.651104;RPB=0.830264;MQB=0.89813;MQSB=0.79189;BQB=0.665351;MQ0F=0.133333;AF1=0.499999;AC1=1;DP4=7,14,1,7;MQ=32;FQ=26.0258;PV4=0.380511,1,0.30879,0.412891 GT:PL 0/1:53,0,246
Scaffold_1 1004678 . C T 134.008 PASS DP=25;VDB=0.510754;SGB=-0.676189;RPB=0.567987;MQB=0.545102;MQSB=1;BQB=0.86813;MQ0F=0.04;AF1=0.5;AC1=1;DP4=3,6,2,9;MQ=34;FQ=105.013;PV4=0.616873,0.259071,1,0.408472 GT:PL 0/1:164,0,132
Scaffold_1 1004700 . T C 50.0072 PASS DP=10;VDB=0.162254;SGB=-0.616816;RPB=0.809011;MQB=0.115573;MQSB=0.924584;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,1,5;MQ=38;FQ=50.8909;PV4=0.22619,0.362424,0.00677085,1 GT:PL 0/1:80,0,82
Scaffold_1 1004705 . G T 24.0241 PASS DP=10;VDB=0.223374;SGB=-0.590765;RPB=0.523791;MQB=0.428556;MQSB=0.916482;BQB=0.761877;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,1,4;MQ=36;FQ=27.0236;PV4=1,0.251399,0.0343604,1 GT:PL 0/1:54,0,119
Scaffold_1 1004706 . G A 29.0123 PASS DP=10;VDB=0.210092;SGB=-0.590765;RPB=0.730948;MQB=0.162433;MQSB=0.924584;BQB=0.730948;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,1,4;MQ=38;FQ=32.0178;PV4=0.52381,1,0.00586356,1 GT:PL 0/1:59,0,112
Scaffold_1 1004709 . T C 52.0072 PASS DP=9;VDB=0.162254;SGB=-0.616816;RPB=0.166667;MQB=0.0833333;MQSB=0.900802;BQB=0.916667;MQ0F=0;AF1=0.500003;AC1=1;DP4=2,0,1,5;MQ=34;FQ=22.04;PV4=0.107143,0.411811,0.026348,1 GT:PL 0/1:82,0,49
Scaffold_1 1004716 . G A 24.0241 PASS DP=10;VDB=0.216674;SGB=-0.590765;RPB=0.0476173;MQB=0.428556;MQSB=0.824834;BQB=0.666643;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,1,4;MQ=33;FQ=27.0236;PV4=1,1,0.0468219,1 GT:PL 0/1:54,0,107
Scaffold_1 1004764 . T C 125.008 PASS DP=13;VDB=0.758048;SGB=-0.616816;RPB=0.895781;MQB=0.503877;MQSB=0.916482;BQB=0.895781;MQ0F=0.153846;AF1=0.500003;AC1=1;DP4=1,3,2,4;MQ=37;FQ=22.0421;PV4=1,1,1,1 GT:PL 0/1:155,0,49
Scaffold_1 1004787 . G C 63.0073 PASS DP=17;VDB=0.863154;SGB=-0.590765;RPB=0.934728;MQB=0.281535;MQSB=0.900862;BQB=0.618783;MQ0F=0.176471;AF1=0.5;AC1=1;DP4=2,8,2,3;MQ=31;FQ=63.0051;PV4=0.56044,0.0614906,1,0.250111 GT:PL 0/1:93,0,93
Scaffold_1 1004791 . A T 52.0072 PASS DP=17;VDB=0.400625;SGB=-0.590765;RPB=0.878142;MQB=0.697005;MQSB=0.767432;BQB=0.851779;MQ0F=0.176471;AF1=0.5;AC1=1;DP4=1,10,3,2;MQ=28;FQ=54.6014;PV4=0.0631868,0.273202,1,1 GT:PL 0/1:82,0,92
Scaffold_1 1004842 . A G 91.0077 PASS DP=23;VDB=0.641691;SGB=-0.616816;RPB=0.743365;MQB=0.0693134;MQSB=0.399018;BQB=0.9945;MQ0F=0.347826;AF1=0.5;AC1=1;DP4=6,11,2,4;MQ=27;FQ=82.6837;PV4=1,0.352102,1,1 GT:PL 0/1:121,0,110
Scaffold_1 1004870 . A T 25.0205 PASS DP=22;VDB=0.172729;SGB=-0.511536;RPB=0.97784;MQB=0.283511;MQSB=0.683926;BQB=0.817356;MQ0F=0.363636;AF1=0.499999;AC1=1;DP4=6,11,1,2;MQ=26;FQ=28.0219;PV4=1,1,1,1 GT:PL 0/1:55,0,137
Scaffold_1 1004871 . C T 36.0081 PASS DP=22;VDB=0.080746;SGB=-0.616816;RPB=0.879827;MQB=0.862013;MQSB=0.714098;BQB=0.2628;MQ0F=0.363636;AF1=0.5;AC1=1;DP4=6,9,1,5;MQ=26;FQ=39.0157;PV4=0.612616,0.002794,1,1 GT:PL 0/1:66,0,135
Scaffold_1 1004877 . C A 46.0072 PASS DP=22;VDB=0.118267;SGB=-0.556411;RPB=0.998885;MQB=0.23541;MQSB=0.516786;BQB=0.611288;MQ0F=0.363636;AF1=0.5;AC1=1;DP4=6,10,1,3;MQ=27;FQ=49.0153;PV4=1,0.0957843,1,1 GT:PL 0/1:76,0,137
Scaffold_1 1004930 . G A 11.3381 PASS DP=14;VDB=0.0588947;SGB=-0.511536;RPB=0.127819;MQB=0.985816;MQSB=0.997325;BQB=0.447727;MQ0F=0.428571;AF1=0.49998;AC1=1;DP4=2,8,3,0;MQ=30;FQ=14.1838;PV4=0.034965,1,1,1 GT:PL 0/1:41,0,126
Scaffold_1 1004968 . G C 31.0104 PASS DP=6;VDB=0.0588947;SGB=-0.511536;RPB=0;MQB=0;MQSB=1;BQB=1;MQ0F=0.333333;AF1=0.5;AC1=1;DP4=1,1,3,0;MQ=42;FQ=33.044;PV4=0.4,1,0.115223,0.111713 GT:PL 0/1:61,0,67
Scaffold_1 1004981 . T A 20.0499 PASS DP=6;VDB=0.0560361;SGB=-0.511536;RPB=0;MQB=0;MQSB=1;BQB=0.666667;MQ0F=0.333333;AF1=0.499998;AC1=1;DP4=1,1,3,0;MQ=42;FQ=22.9512;PV4=0.4,0.247513,0.115223,0.047726 GT:PL 0/1:50,0,67
Scaffold_1 1005113 . G A 40.0075 PASS DP=16;VDB=0.292086;SGB=-0.556411;RPB=0.551238;MQB=0.378164;MQSB=0.986852;BQB=0.983592;MQ0F=0.375;AF1=0.5;AC1=1;DP4=9,3,1,3;MQ=32;FQ=43.0154;PV4=0.118132,1,1,1 GT:PL 0/1:70,0,147
Scaffold_1 1005119 . A G 92.0077 PASS DP=17;VDB=0.387746;SGB=-0.616816;RPB=0.182684;MQB=0.266194;MQSB=0.986852;BQB=0.2016;MQ0F=0.352941;AF1=0.5;AC1=1;DP4=5,5,5,1;MQ=32;FQ=75.9613;PV4=0.306943,0.0178427,1,1 GT:PL 0/1:122,0,103
Scaffold_1 1005189 . G A 78.0076 PASS DP=14;VDB=0.241952;SGB=-0.616816;RPB=0.586646;MQB=0.103441;MQSB=0.526122;BQB=0.991701;MQ0F=0.428571;AF1=0.500006;AC1=1;DP4=7,1,2,4;MQ=27;FQ=19.069;PV4=0.0909091,0.371601,1,1 GT:PL 0/1:108,0,46
Scaffold_1 1005190 . C T 39.0076 PASS DP=14;VDB=0.230191;SGB=-0.556411;RPB=0.697593;MQB=0.236815;MQSB=0.591555;BQB=0.928296;MQ0F=0.428571;AF1=0.5;AC1=1;DP4=8,1,0,4;MQ=28;FQ=39.8912;PV4=0.00699301,0.280723,1,1 GT:PL 0/1:69,0,71
Scaffold_1 1005204 . G A 34.0087 PASS DP=15;VDB=0.220638;SGB=-0.556411;RPB=0.426445;MQB=0.236847;MQSB=0.0815169;BQB=0.697617;MQ0F=0.333333;AF1=0.5;AC1=1;DP4=9,2,0,4;MQ=30;FQ=37.016;PV4=0.010989,1,1,1 GT:PL 0/1:64,0,122
Scaffold_1 1005219 . A C 11.3381 PASS DP=12;VDB=0.0751808;SGB=-0.556411;RPB=0.697274;MQB=0.793923;MQSB=0.253351;BQB=0.594978;MQ0F=0.25;AF1=0.49998;AC1=1;DP4=3,5,4,0;MQ=30;FQ=14.1838;PV4=0.0808081,1,0.377753,1 GT:PL 0/1:41,0,136
Scaffold_1 1005263 . T A 63.0073 PASS DP=11;VDB=0.148314;SGB=-0.590765;RPB=0.142852;MQB=0.666643;MQSB=0.0476173;BQB=0.857112;MQ0F=0.272727;AF1=0.500002;AC1=1;DP4=4,1,1,4;MQ=31;FQ=24.0319;PV4=0.206349,1,1,1 GT:PL 0/1:93,0,51
Scaffold_1 1005267 . A G 67.0081 PASS DP=11;VDB=0.150948;SGB=-0.590765;RPB=0.475476;MQB=0.148586;MQSB=0.148586;BQB=0.8618;MQ0F=0.363636;AF1=0.500079;AC1=1;DP4=5,1,1,4;MQ=27;FQ=8.65167;PV4=0.0800866,1,1,1 GT:PL 0/1:97,0,35
Scaffold_1 1005300 . G A 69.0096 PASS DP=11;VDB=0.150948;SGB=-0.590765;RPB=0.356607;MQB=0.148586;MQSB=0.0891517;BQB=0.683497;MQ0F=0.454545;AF1=0.50025;AC1=1;DP4=4,2,1,4;MQ=26;FQ=4.77417;PV4=0.242424,1,1,1 GT:PL 0/1:99,0,30
Scaffold_1 1005352 . C T 30.0112 PASS DP=18;VDB=0.286646;SGB=-0.556411;RPB=0.119433;MQB=0.170923;MQSB=0.283511;BQB=0.800574;MQ0F=0.5;AF1=0.5;AC1=1;DP4=6,6,1,3;MQ=21;FQ=27.5672;PV4=0.584615,0.245303,1,0.224733 GT:PL 0/1:60,0,56
Scaffold_1 1005359 . C T 49.0072 PASS DP=22;VDB=0.852991;SGB=-0.590765;RPB=0.145356;MQB=0.0560813;MQSB=0.659954;BQB=0.400421;MQ0F=0.590909;AF1=0.500003;AC1=1;DP4=7,8,2,3;MQ=21;FQ=23.0311;PV4=1,0.128317,1,0.451648 GT:PL 0/1:79,0,50
Scaffold_1 1005489 . G T 39.0076 PASS DP=10;VDB=0.977838;SGB=-0.511536;RPB=0.809011;MQB=0.115573;MQSB=0.243649;BQB=0.346719;MQ0F=0.5;AF1=0.500008;AC1=1;DP4=2,4,3,0;MQ=28;FQ=18.066;PV4=0.166667,0.0337916,1,0.0983856 GT:PL 0/1:69,0,45
Scaffold_1 1005539 . G A 63.0101 PASS DP=5;VDB=0.131948;SGB=-0.511536;RPB=0.833333;MQB=0.166667;MQSB=1;BQB=0.666667;MQ0F=0.2;AF1=0.500315;AC1=1;DP4=2,0,2,1;MQ=41;FQ=4.13346;PV4=1,0.247513,1,1 GT:PL 0/1:93,0,29
Scaffold_1 1005691 . G T 44.0081 PASS DP=17;VDB=0.610267;SGB=-0.556411;RPB=0.658617;MQB=0.236847;MQSB=0.501405;BQB=0.735784;MQ0F=0.294118;AF1=0.5001;AC1=1;DP4=9,2,2,2;MQ=29;FQ=7.80205;PV4=0.516484,0.437916,1,1 GT:PL 0/1:74,0,34
Scaffold_1 1005774 . C T 23.0285 PASS DP=30;VDB=0.273436;SGB=-0.590765;RPB=1;MQB=0.677057;MQSB=0.308873;BQB=0.990812;MQ0F=0.3;AF1=0.499999;AC1=1;DP4=12,8,2,3;MQ=22;FQ=26.0258;PV4=0.623188,1,1,1 GT:PL 0/1:53,0,106
Scaffold_1 1005925 . C G 88.009 PASS DP=9;VDB=0.497461;SGB=-0.556411;RPB=0.649731;MQB=0.0812164;MQSB=0.5;BQB=0.89338;MQ0F=0.111111;AF1=0.500158;AC1=1;DP4=0,5,2,2;MQ=37;FQ=6.20452;PV4=0.166667,1,1,1 GT:PL 0/1:118,0,32
Scaffold_1 1005999 . T C 17.0924 PASS DP=15;VDB=0.102722;SGB=-0.511536;RPB=0.989637;MQB=0.600245;MQSB=0.99308;BQB=0.809825;MQ0F=0.0666667;AF1=0.499995;AC1=1;DP4=8,4,1,2;MQ=30;FQ=20.058;PV4=0.525275,1,1,1 GT:PL 0/1:47,0,147
Scaffold_1 1006000 . G A 53.0072 PASS DP=15;VDB=0.0366953;SGB=-0.590765;RPB=0.88692;MQB=0.88692;MQSB=0.99308;BQB=0.728422;MQ0F=0.0666667;AF1=0.5;AC1=1;DP4=6,4,3,2;MQ=30;FQ=56.0153;PV4=1,0.319549,1,0.309622 GT:PL 0/1:83,0,130
Scaffold_1 1006029 . C T 12.272 PASS DP=18;VDB=0.251321;SGB=-0.511536;RPB=0.0905589;MQB=0.334041;MQSB=0.743558;BQB=0.364027;MQ0F=0.111111;AF1=0.499984;AC1=1;DP4=9,6,2,1;MQ=26;FQ=15.1496;PV4=1,0.0249499,1,0.0115266 GT:PL 0/1:42,0,149
Scaffold_1 1006034 . C T 10.42 PASS DP=19;VDB=0.0483573;SGB=-0.556411;RPB=0.474369;MQB=0.965369;MQSB=0.743558;BQB=0.758573;MQ0F=0.105263;AF1=0.499975;AC1=1;DP4=9,5,2,2;MQ=26;FQ=13.2265;PV4=1,0.165948,1,1 GT:PL 0/1:40,0,155
Scaffold_1 1006043 . G A 21.0411 PASS DP=20;VDB=0.460446;SGB=-0.511536;RPB=0.729697;MQB=0.146993;MQSB=0.567987;BQB=0.892753;MQ0F=0.1;AF1=0.499998;AC1=1;DP4=10,7,1,2;MQ=27;FQ=24.0321;PV4=0.565789,1,1,0.134729 GT:PL 0/1:51,0,165
Scaffold_1 1006062 . G A 20.0499 PASS DP=19;VDB=0.450604;SGB=-0.511536;RPB=0.839089;MQB=0.116586;MQSB=0.824135;BQB=0.938795;MQ0F=0.105263;AF1=0.499997;AC1=1;DP4=9,6,1,2;MQ=26;FQ=23.0366;PV4=0.558824,0.399011,1,1 GT:PL 0/1:50,0,151
Scaffold_1 1006086 . C T 54.0072 PASS DP=21;VDB=0.741566;SGB=-0.616816;RPB=0.599223;MQB=0.460355;MQSB=0.93882;BQB=0.438235;MQ0F=0.0952381;AF1=0.5;AC1=1;DP4=8,7,4,2;MQ=26;FQ=57.0154;PV4=0.659443,0.0193774,1,1 GT:PL 0/1:84,0,147
Scaffold_1 1006110 . C T 88.0076 PASS DP=22;VDB=0.13136;SGB=-0.662043;RPB=0.650623;MQB=0.924089;MQSB=0.554013;BQB=0.939528;MQ0F=0.136364;AF1=0.5;AC1=1;DP4=6,3,5,4;MQ=25;FQ=69.9812;PV4=1,0.0842565,1,1 GT:PL 0/1:118,0,97
Scaffold_1 1006259 . G A 30.0113 PASS DP=14;VDB=0.184775;SGB=-0.556411;RPB=0.928296;MQB=0.114218;MQSB=0.181818;BQB=0.826565;MQ0F=0.357143;AF1=0.500005;AC1=1;DP4=2,7,0,4;MQ=25;FQ=19.8477;PV4=1,1,1,1 GT:PL 0/1:60,0,47
Scaffold_1 1006301 . T C 10.42 PASS DP=9;VDB=0.88;SGB=-0.453602;RPB=0.916667;MQB=0.416667;BQB=0.583333;MQ0F=0.222222;AF1=0.499975;AC1=1;DP4=0,6,0,2;MQ=29;FQ=13.2249;PV4=1,0.160382,1,1 GT:PL 0/1:40,0,74
Scaffold_1 1006456 . C T 64.7648 PASS DP=8;VDB=0.150948;SGB=-0.590765;RPB=1;MQB=1;MQSB=0;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,1,4,1;MQ=34;FQ=-32.988;PV4=0.333333,0.367445,1,0.324865 GT:PL 1/1:96,6,0
Scaffold_1 1006519 . T C 111.193 PASS DP=9;VDB=0.223909;SGB=-0.636426;RPB=0.714286;MQB=0.0714286;MQSB=0.115573;BQB=0.857143;MQ0F=0.111111;AF1=1;AC1=2;DP4=0,2,6,1;MQ=32;FQ=-34.9872;PV4=0.0833333,0.313142,1,1 GT:PL 1/1:143,8,0
Scaffold_1 1006683 . T C 80.0162 PASS DP=7;VDB=0.0665622;SGB=-0.556411;RPB=0;MQB=0.75;MQSB=0.25;BQB=0.25;MQ0F=0.142857;AF1=0.500997;AC1=1;DP4=1,1,1,3;MQ=34;FQ=-4.75466;PV4=1,1,1,1 GT:PL 0/1:110,0,24
Scaffold_1 1007107 . G A 28.0137 PASS DP=18;VDB=0.38;SGB=-0.453602;RPB=0.454545;MQB=0.272727;MQSB=0.765017;BQB=0.863636;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=7,4,1,1;MQ=43;FQ=31.0185;PV4=1,1,1,1 GT:PL 0/1:58,0,222
Scaffold_1 1007432 . G T 25.0205 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0.8;MQSB=0.810265;BQB=0.6;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,2,0;MQ=59;FQ=28.0219;PV4=0.428571,1,1,1 GT:PL 0/1:55,0,148
Scaffold_1 1019263 . C A 13.2188 PASS DP=11;VDB=0.02;SGB=-0.453602;RPB=0.888889;MQB=0.222222;MQSB=0.148586;BQB=0.666667;MQ0F=0;AF1=0.499987;AC1=1;DP4=4,5,2,0;MQ=42;FQ=16.1222;PV4=0.454545,1,1,1 GT:PL 0/1:43,0,204
Scaffold_1 1020296 . C G 30.0112 PASS DP=14;VDB=0.337266;SGB=-0.636426;RPB=0.470358;MQB=0.0306755;MQSB=0.096972;BQB=0.245404;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=4,2,0,7;MQ=38;FQ=33.0172;PV4=0.020979,0.0256518,0.00324543,0.0418292 GT:PL 0/1:60,0,159
Scaffold_1 1021574 . G A 35.0083 PASS DP=7;VDB=0.0588947;SGB=-0.511536;RPB=0.202566;MQB=0.607698;MQSB=1;BQB=0.607698;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=45;FQ=37.9081;PV4=1,1,0.213223,0.0161143 GT:PL 0/1:65,0,81
Scaffold_1 1021584 . C T 35.0083 PASS DP=7;VDB=0.0714862;SGB=-0.511536;RPB=0.202566;MQB=0.607698;MQSB=1;BQB=0.607698;MQ0F=0;AF1=0.5;AC1=1;DP4=3,1,3,0;MQ=45;FQ=37.9726;PV4=1,1,0.213223,0.432418 GT:PL 0/1:65,0,85
Scaffold_1 1021595 . A G 38.0077 PASS DP=6;VDB=0.102722;SGB=-0.511536;RPB=0.28717;MQB=0.861511;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=42;FQ=33.227;PV4=1,0.462006,0.311191,1 GT:PL 0/1:68,0,61
Scaffold_1 1021610 . G A 38.0077 PASS DP=6;VDB=0.142856;SGB=-0.511536;RPB=0.28717;MQB=0.861511;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.500001;AC1=1;DP4=2,1,3,0;MQ=42;FQ=25.891;PV4=1,1,0.311191,1 GT:PL 0/1:68,0,53
Scaffold_1 1021613 . C A 38.0077 PASS DP=6;VDB=0.154358;SGB=-0.511536;RPB=0.28717;MQB=0.861511;MQSB=1;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,3,0;MQ=42;FQ=36.2518;PV4=1,1,0.311191,1 GT:PL 0/1:68,0,65
Scaffold_1 1021619 . C A 32.0097 PASS DP=8;VDB=0.166456;SGB=-0.511536;RPB=0.900802;MQB=0.450401;MQSB=0.900802;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,3,0;MQ=47;FQ=35.0165;PV4=0.196429,1,0.149304,1 GT:PL 0/1:62,0,128
Scaffold_1 1021620 . C A 32.0097 PASS DP=8;VDB=0.166456;SGB=-0.511536;RPB=0.900802;MQB=0.450401;MQSB=0.900802;BQB=0.600535;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,3,0;MQ=47;FQ=35.0165;PV4=0.196429,1,0.149304,1 GT:PL 0/1:62,0,128
Scaffold_1 1021642 . G A 35.0083 PASS DP=7;VDB=0.267404;SGB=-0.511536;RPB=1.01283;MQB=0.607698;MQSB=0.810265;BQB=1.01283;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,3,0;MQ=45;FQ=38.0049;PV4=0.142857,0.422836,0.213223,1 GT:PL 0/1:65,0,91
Scaffold_1 1021667 . G T 29.0123 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=0.666667;MQSB=0.666667;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,2,0;MQ=46;FQ=31.0452;PV4=0.1,1,0.462485,1 GT:PL 0/1:59,0,65
Scaffold_1 1021670 . A C 26.0177 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=0.5;MQSB=0.5;BQB=0.75;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,4,2,0;MQ=48;FQ=29.0187;PV4=0.0666667,1,0.375612,1 GT:PL 0/1:56,0,90
Scaffold_1 1021671 . A C 21.0411 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=0.4;MQSB=0.4;BQB=0.9;MQ0F=0;AF1=0.499998;AC1=1;DP4=0,5,2,0;MQ=50;FQ=24.0321;PV4=0.047619,1,0.30941,1 GT:PL 0/1:51,0,100
Scaffold_1 1021686 . G A 26.0177 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=0;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,4,2,0;MQ=54;FQ=29.0204;PV4=0.0666667,1,0,1 GT:PL 0/1:56,0,110
Scaffold_1 1021687 . C T 26.0177 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=0;BQB=0.75;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,4,2,0;MQ=54;FQ=29.0204;PV4=0.0666667,1,0,1 GT:PL 0/1:56,0,105
Scaffold_1 1021689 . C A 26.0177 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=0;BQB=0.75;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,4,2,0;MQ=54;FQ=29.0204;PV4=0.0666667,1,0,1 GT:PL 0/1:56,0,102
Scaffold_1 1021695 . C T 26.0177 PASS DP=6;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=0;BQB=0.75;MQ0F=0;AF1=0.499999;AC1=1;DP4=0,4,2,0;MQ=54;FQ=29.0204;PV4=0.0666667,1,0,0.0580583 GT:PL 0/1:56,0,108
Scaffold_1 1021777 . T A 18.0749 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0;MQB=0;MQSB=1;BQB=0.2;MQ0F=0;AF1=0.499996;AC1=1;DP4=1,4,0,2;MQ=55;FQ=21.0492;PV4=1,0.0311762,0,0.0586934 GT:PL 0/1:48,0,146
Scaffold_1 1021825 . C T 28.0137 PASS DP=7;VDB=0.364077;SGB=-0.511536;RPB=0.405132;MQB=0.202566;MQSB=0.4;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=51;FQ=31.0185;PV4=0.428571,0.142795,0.0043137,0.142795 GT:PL 0/1:58,0,130
Scaffold_1 1021858 . T A 32.0097 PASS DP=9;VDB=0.382879;SGB=-0.511536;RPB=0.750668;MQB=0.150134;MQSB=0.450401;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,0,3;MQ=52;FQ=35.0165;PV4=0.196429,0.293118,0.00151182,1 GT:PL 0/1:62,0,168
Scaffold_1 1021859 . T C 26.0177 PASS DP=9;VDB=0.401962;SGB=-0.511536;RPB=0.750668;MQB=0.150134;MQSB=0.450401;BQB=0.600535;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,2,0,3;MQ=52;FQ=29.0205;PV4=0.196429,0.163514,0.00151182,1 GT:PL 0/1:56,0,174
Scaffold_1 1021868 . G A 32.0097 PASS DP=9;VDB=0.401962;SGB=-0.511536;RPB=0.750668;MQB=0.150134;MQSB=0.450401;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,0,3;MQ=52;FQ=35.0165;PV4=0.196429,0.237343,0.00151182,1 GT:PL 0/1:62,0,165
Scaffold_1 1021884 . G A 35.0083 PASS DP=9;VDB=0.401962;SGB=-0.511536;RPB=0.810265;MQB=0.202566;MQSB=0.4;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=51;FQ=38.0158;PV4=0.428571,0.218294,0.0043137,1 GT:PL 0/1:65,0,149
Scaffold_1 1021890 . G A 32.0097 PASS DP=9;VDB=0.411594;SGB=-0.511536;RPB=1.01283;MQB=0.202566;MQSB=0.4;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,3;MQ=51;FQ=35.0165;PV4=0.428571,0.236746,0.0043137,1 GT:PL 0/1:62,0,141
Scaffold_1 1024413 . C T 15.1417 PASS DP=6;VDB=0.48;SGB=-0.453602;RPB=0;MQB=0.5;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.499992;AC1=1;DP4=3,1,2,0;MQ=57;FQ=18.0829;PV4=1,0.170165,0.0889039,1 GT:PL 0/1:45,0,120
Scaffold_1 1026559 . T C 67.5132 PASS DP=4;VDB=0.00766117;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026560 . T G 67.5132 PASS DP=4;VDB=0.00911214;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026569 . C T 67.5132 PASS DP=4;VDB=0.00992398;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026575 . T G 67.5132 PASS DP=4;VDB=0.00992398;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026593 . C T 67.5132 PASS DP=4;VDB=0.0175817;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026594 . G A 67.5132 PASS DP=4;VDB=0.0175817;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026597 . G A 67.5132 PASS DP=4;VDB=0.0175817;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026616 . C T 67.5132 PASS DP=4;VDB=0.0238972;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026623 . T A 67.5132 PASS DP=4;VDB=0.0298006;SGB=-0.556411;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,4,0;MQ=35;FQ=-38.9864 GT:PL 1/1:100,12,0
Scaffold_1 1026691 . A G 33.0118 PASS DP=4;VDB=0.0941127;SGB=-0.511536;RPB=1;MQB=1;MQSB=0.25;BQB=1;MQ0F=0.25;AF1=0.500315;AC1=1;DP4=1,0,1,2;MQ=50;FQ=4.1324;PV4=1,0.333333,0.302752,0.211325 GT:PL 0/1:63,0,29
Scaffold_1 1026708 . C T 42.0101 PASS DP=4;VDB=0.0941126;SGB=-0.511536;RPB=1;MQB=1;MQSB=0.25;BQB=1;MQ0F=0.25;AF1=0.500315;AC1=1;DP4=1,0,1,2;MQ=50;FQ=4.13333;PV4=1,1,0.302752,1 GT:PL 0/1:72,0,29
Scaffold_1 1026710 . G A 36.9729 PASS DP=4;VDB=0.0860477;SGB=-0.511536;MQSB=1;MQ0F=0.25;AF1=1;AC1=2;DP4=0,0,1,2;MQ=46;FQ=-35.9869 GT:PL 1/1:69,9,0
Scaffold_1 1026714 . G A 42.029 PASS DP=4;VDB=0.0941126;SGB=-0.511536;RPB=1;MQB=1;MQSB=0.25;BQB=1;MQ0F=0.25;AF1=0.502513;AC1=1;DP4=1,0,1,2;MQ=50;FQ=-7.77801;PV4=1,1,0.302752,1 GT:PL 0/1:72,0,20
Scaffold_1 1026715 . C T 42.0101 PASS DP=4;VDB=0.0941126;SGB=-0.511536;RPB=1;MQB=1;MQSB=0.25;BQB=1;MQ0F=0.25;AF1=0.500315;AC1=1;DP4=1,0,1,2;MQ=50;FQ=4.13333;PV4=1,1,0.302752,1 GT:PL 0/1:72,0,29
Scaffold_1 1026755 . C T 90.0077 PASS DP=8;VDB=0.123672;SGB=-0.590765;RPB=0.750668;MQB=0.150134;MQSB=0.124046;BQB=0.450401;MQ0F=0.125;AF1=0.5;AC1=1;DP4=3,0,1,4;MQ=52;FQ=45.0153;PV4=0.142857,1,0.119419,1 GT:PL 0/1:120,0,72
Scaffold_1 1026757 . A G 94.0077 PASS DP=9;VDB=0.119109;SGB=-0.590765;RPB=0.750668;MQB=0.150134;MQSB=0.450401;BQB=0.300267;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=2,1,1,4;MQ=52;FQ=45.0153;PV4=0.464286,1,0.119419,1 GT:PL 0/1:124,0,72
Scaffold_1 1026762 . A G 85.0076 PASS DP=9;VDB=0.123672;SGB=-0.590765;RPB=0.487298;MQB=0.0812164;MQSB=0.243649;BQB=0.730948;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=3,1,1,4;MQ=53;FQ=70.9297;PV4=0.206349,1,0.0840001,1 GT:PL 0/1:115,0,98
Scaffold_1 1026786 . C T 106.008 PASS DP=10;VDB=0.106137;SGB=-0.590765;RPB=0.487298;MQB=0.0812164;MQSB=0.243649;BQB=0.406082;MQ0F=0.1;AF1=0.5;AC1=1;DP4=3,1,1,4;MQ=53;FQ=79.0113;PV4=0.206349,1,0.0840001,1 GT:PL 0/1:136,0,106
Scaffold_1 1026794 . C A 108.008 PASS DP=9;VDB=0.0980762;SGB=-0.590765;RPB=0.150134;MQB=0.150134;MQSB=0.450401;BQB=0.900802;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=2,1,1,4;MQ=52;FQ=66.0154;PV4=0.464286,1,0.119419,0.240809 GT:PL 0/1:138,0,93
Scaffold_1 1026812 . T C 94.0077 PASS DP=10;VDB=0.0949329;SGB=-0.556411;RPB=0.0812164;MQB=0.0812164;MQSB=0.406082;BQB=0.974597;MQ0F=0;AF1=0.5;AC1=1;DP4=4,1,1,3;MQ=57;FQ=96.8463;PV4=0.206349,1,0.00278716,1 GT:PL 0/1:124,0,138
Scaffold_1 1029497 . C T 28.0137 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,2,0;MQ=60;FQ=31.0185;PV4=0.466667,0.296392,1,1 GT:PL 0/1:58,0,148
Scaffold_1 1058359 . G T 10.42 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.333333;MQB=1;MQSB=1;BQB=0.916667;MQ0F=0;AF1=0.499975;AC1=1;DP4=5,1,2,0;MQ=60;FQ=13.2265;PV4=1,0.421502,1,1 GT:PL 0/1:40,0,146
Scaffold_1 1070574 . G T 31.0104 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,2;MQ=60;FQ=34.0164;PV4=0.4,1,1,1 GT:PL 0/1:61,0,101
Scaffold_1 1082087 . C A 30.0112 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=0.25;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,0,2;MQ=60;FQ=32.9899;PV4=0.333333,0.194351,1,1 GT:PL 0/1:60,0,82
Scaffold_1 1088387 . C T 13.2188 PASS DP=10;VDB=0.681436;SGB=-0.511536;RPB=0.824834;MQB=0.0916482;MQSB=1.00775;BQB=0.641538;MQ0F=0;AF1=0.499987;AC1=1;DP4=3,4,1,2;MQ=52;FQ=16.1222;PV4=1,0.118732,1.35514e-06,1 GT:PL 0/1:43,0,194
Scaffold_1 1088421 . G A 64.0073 PASS DP=12;VDB=0.969621;SGB=-0.590765;RPB=0.891517;MQB=0.0297172;MQSB=0.8618;BQB=0.564628;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,3,2;MQ=51;FQ=67.0155;PV4=0.5671,0.0519441,0.00215266,0.0381517 GT:PL 0/1:94,0,174
Scaffold_1 1088426 . A T 75.0075 PASS DP=14;VDB=0.968032;SGB=-0.590765;RPB=0.908075;MQB=0.0137638;MQSB=0.679965;BQB=0.935229;MQ0F=0;AF1=0.5;AC1=1;DP4=2,6,3,2;MQ=53;FQ=78.0156;PV4=0.292929,0.448331,0.000492217,0.347321 GT:PL 0/1:105,0,197
Scaffold_1 1088441 . T C 34.0087 PASS DP=12;VDB=0.354794;SGB=-0.511536;RPB=0.979382;MQB=0.0497871;MQSB=0.763675;BQB=0.920044;MQ0F=0;AF1=0.5;AC1=1;DP4=2,6,2,1;MQ=56;FQ=37.016;PV4=0.490909,1,0.00493639,1 GT:PL 0/1:64,0,204
Scaffold_1 1088448 . G A 31.0104 PASS DP=12;VDB=0.354794;SGB=-0.511536;RPB=0.995736;MQB=0.0443614;MQSB=0.697274;BQB=0.962269;MQ0F=0;AF1=0.5;AC1=1;DP4=2,7,2,1;MQ=56;FQ=34.0168;PV4=0.236364,1,0.00292463,1 GT:PL 0/1:61,0,215
Scaffold_1 1088477 . A G 21.0411 PASS DP=14;VDB=0.37344;SGB=-0.511536;RPB=0.699673;MQB=0.040184;MQSB=0.899815;BQB=0.127819;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,6,2,1;MQ=57;FQ=24.0321;PV4=0.559441,0.156181,0.0017383,1 GT:PL 0/1:51,0,255
Scaffold_1 1088499 . C A 10.42 PASS DP=15;VDB=0.401962;SGB=-0.511536;RPB=0.334895;MQB=0.0368832;MQSB=0.925999;BQB=0.374629;MQ0F=0;AF1=0.499975;AC1=1;DP4=5,6,2,1;MQ=57;FQ=13.2265;PV4=1,0.112253,0.00103602,0.375392 GT:PL 0/1:40,0,255
Scaffold_1 1088529 . A G 14.176 PASS DP=18;VDB=0.845642;SGB=-0.511536;RPB=0.520042;MQB=0.032027;MQSB=0.985665;BQB=0.990991;MQ0F=0;AF1=0.49999;AC1=1;DP4=9,4,2,1;MQ=57;FQ=17.1004;PV4=1,0.378006,0.000459457,1 GT:PL 0/1:44,0,255
Scaffold_1 1088659 . G A 18.0749 PASS DP=8;VDB=0.5;SGB=-0.453602;RPB=0.666667;MQB=0;MQSB=0.450401;BQB=0.916667;MQ0F=0;AF1=0.499996;AC1=1;DP4=5,1,0,2;MQ=56;FQ=21.0492;PV4=0.107143,1,0,1 GT:PL 0/1:48,0,143
Scaffold_1 1088667 . G A 16.1143 PASS DP=7;VDB=0.5;SGB=-0.453602;RPB=0.7;MQB=0;MQSB=0.405132;BQB=0.8;MQ0F=0;AF1=0.499994;AC1=1;DP4=4,1,0,2;MQ=55;FQ=19.069;PV4=0.142857,0.319591,0,1 GT:PL 0/1:46,0,138
Scaffold_1 1088682 . A G 21.0411 PASS DP=8;VDB=0.5;SGB=-0.453602;RPB=0.8;MQB=0;MQSB=0.405132;BQB=0.8;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,1,0,2;MQ=55;FQ=24.0321;PV4=0.142857,1,0,1 GT:PL 0/1:51,0,135
Scaffold_1 1088690 . A G 23.0285 PASS DP=8;VDB=0.5;SGB=-0.453602;RPB=0.8;MQB=0;MQSB=0.405132;BQB=0.8;MQ0F=0;AF1=0.499999;AC1=1;DP4=4,1,0,2;MQ=55;FQ=26.0258;PV4=0.142857,1,0,1 GT:PL 0/1:53,0,145
Scaffold_1 1088718 . T C 17.0924 PASS DP=10;VDB=0.5;SGB=-0.453602;RPB=0.571429;MQB=0;MQSB=0.649731;BQB=0.428571;MQ0F=0;AF1=0.499995;AC1=1;DP4=4,3,0,2;MQ=56;FQ=20.058;PV4=0.444444,1,0,1 GT:PL 0/1:47,0,182
Scaffold_1 1101195 . C A 14.176 PASS DP=9;VDB=0.02;SGB=-0.453602;RPB=0.333333;MQB=0;MQSB=0.62023;BQB=0.75;MQ0F=0;AF1=0.49999;AC1=1;DP4=4,2,0,2;MQ=55;FQ=17.1004;PV4=0.428571,1,4.19931e-08,1 GT:PL 0/1:44,0,149
Scaffold_1 1101215 . G A 23.0285 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.5;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,2,0,2;MQ=54;FQ=26.0258;PV4=0.466667,1,9.87481e-06,1 GT:PL 0/1:53,0,133
Scaffold_1 1101218 . G T 23.0285 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.5;BQB=1;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,2,0,2;MQ=54;FQ=26.0258;PV4=0.466667,1,9.87481e-06,1 GT:PL 0/1:53,0,133
Scaffold_1 1101228 . G T 21.0411 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=0;MQSB=0.405132;BQB=0.8;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,1,0,2;MQ=55;FQ=24.0321;PV4=0.142857,1,6.41375e-07,1 GT:PL 0/1:51,0,145
Scaffold_1 1101232 . C T 21.0411 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=0;MQSB=0.405132;BQB=0.5;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,1,0,2;MQ=55;FQ=24.0321;PV4=0.142857,0.0586934,6.41375e-07,1 GT:PL 0/1:51,0,147
Scaffold_1 1103272 . A G 31.0104 PASS DP=6;VDB=0.401962;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=48;FQ=34.0125;PV4=0.4,1,0.0239583,0.459425 GT:PL 0/1:61,0,91
Scaffold_1 1103278 . C T 29.0123 PASS DP=6;VDB=0.401962;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=48;FQ=32.015;PV4=0.4,1,0.0239583,0.425618 GT:PL 0/1:59,0,91
Scaffold_1 1103302 . T A 29.0123 PASS DP=6;VDB=0.440791;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=48;FQ=32.0173;PV4=0.4,0.18695,0.0239583,1 GT:PL 0/1:59,0,99
Scaffold_1 1103303 . C T 31.0104 PASS DP=6;VDB=0.450604;SGB=-0.511536;RPB=0.861511;MQB=0.28717;MQSB=0.25;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=48;FQ=34.0161;PV4=0.4,1,0.0239583,1 GT:PL 0/1:61,0,99
Scaffold_1 1103307 . T C 67.0074 PASS DP=6;VDB=0.397076;SGB=-0.556411;RPB=0.5;MQB=0.25;MQSB=0.25;BQB=0.75;MQ0F=0;AF1=0.5;AC1=1;DP4=1,1,3,1;MQ=48;FQ=37.0138;PV4=1,0.270735,0.11545,1 GT:PL 0/1:97,0,64
Scaffold_1 1103319 . T C 22.0341 PASS DP=7;VDB=0.480199;SGB=-0.511536;RPB=0.810265;MQB=0.202566;MQSB=0.4;BQB=0.607698;MQ0F=0;AF1=0.499998;AC1=1;DP4=2,2,3,0;MQ=50;FQ=25.0286;PV4=0.428571,0.0626694,0.00996253,1 GT:PL 0/1:52,0,127
Scaffold_1 1103320 . A G 29.0123 PASS DP=7;VDB=0.490096;SGB=-0.511536;RPB=0.810265;MQB=0.202566;MQSB=0.4;BQB=1.01283;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,3,0;MQ=50;FQ=32.0178;PV4=0.428571,0.273778,0.00996253,1 GT:PL 0/1:59,0,123
Scaffold_1 1103324 . C A 22.0341 PASS DP=7;VDB=0.490096;SGB=-0.511536;RPB=0.810265;MQB=0.202566;MQSB=0.4;BQB=0.405132;MQ0F=0;AF1=0.499998;AC1=1;DP4=2,2,3,0;MQ=50;FQ=25.0286;PV4=0.428571,0.0311762,0.00996253,1 GT:PL 0/1:52,0,130
Scaffold_1 1103337 . T C 23.0285 PASS DP=6;VDB=0.42;SGB=-0.453602;RPB=0.5;MQB=0;MQSB=0.5;BQB=0.5;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,2,2,0;MQ=54;FQ=26.0258;PV4=0.466667,0.0889039,0,1 GT:PL 0/1:53,0,133
Scaffold_1 1103352 . T C 29.0123 PASS DP=8;VDB=0.928514;SGB=-0.511536;RPB=0.900802;MQB=0.150134;MQSB=0.5;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,3,0;MQ=54;FQ=32.0178;PV4=0.464286,0.0705946,8.52221e-09,0.319947 GT:PL 0/1:59,0,156
Scaffold_1 1103383 . C T 25.0205 PASS DP=9;VDB=0.827271;SGB=-0.511536;RPB=0.809011;MQB=0.115573;MQSB=0.89338;BQB=0.924584;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,3,2,1;MQ=53;FQ=28.0219;PV4=1,1,0.00191489,1 GT:PL 0/1:55,0,168
Scaffold_1 1103388 . C T 21.0411 PASS DP=10;VDB=0.833544;SGB=-0.511536;RPB=0.809011;MQB=0.115573;MQSB=0.89338;BQB=0.809011;MQ0F=0;AF1=0.499998;AC1=1;DP4=3,3,2,1;MQ=53;FQ=24.0321;PV4=1,0.18994,0.00191489,1 GT:PL 0/1:51,0,178
Scaffold_1 1103398 . G T 27.0155 PASS DP=9;VDB=0.827271;SGB=-0.511536;RPB=0.924584;MQB=0.115573;MQSB=0.89338;BQB=0.809011;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,4,2,1;MQ=53;FQ=30.0194;PV4=0.52381,1,0.00191489,1 GT:PL 0/1:57,0,172
Scaffold_1 1103599 . C T 40.0075 PASS DP=7;VDB=0.244943;SGB=-0.556411;RPB=0.810265;MQB=0.202566;MQSB=0.810265;BQB=0.810265;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=2,1,1,3;MQ=47;FQ=42.7497;PV4=0.485714,0.255905,0.0260907,0.444392 GT:PL 0/1:70,0,82
Scaffold_1 1103612 . T C 49.0072 PASS DP=7;VDB=0.23997;SGB=-0.556411;RPB=0.810265;MQB=0.202566;MQSB=0.810265;BQB=0.405132;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=2,1,1,3;MQ=47;FQ=38.8033;PV4=0.485714,1,0.0260907,1 GT:PL 0/1:79,0,66
Scaffold_1 1115912 . C A 54.0072 PASS DP=7;VDB=0.0221621;SGB=-0.511536;RPB=0.607698;MQB=1.01283;MQSB=1;BQB=0.607698;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,0,3;MQ=60;FQ=57.0067;PV4=1,1,1,1 GT:PL 0/1:84,0,111
Scaffold_1 1123420 . G A 52.0072 PASS DP=7;VDB=0.828494;SGB=-0.556411;RPB=1.01283;MQB=0.607698;MQSB=0.6;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,4,0;MQ=54;FQ=54.8458;PV4=0.142857,0.218294,0.174432,0.218294 GT:PL 0/1:82,0,96
Scaffold_1 1123444 . G A 54.0072 PASS DP=6;VDB=0.401962;SGB=-0.511536;RPB=0.861511;MQB=0.861511;MQSB=0.75;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=59;FQ=56.8802;PV4=0.4,0.18695,0.18695,1 GT:PL 0/1:84,0,99
Scaffold_1 1123445 . T G 57.0073 PASS DP=6;VDB=0.411594;SGB=-0.511536;RPB=0.861511;MQB=0.861511;MQSB=0.75;BQB=0.861511;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,0;MQ=59;FQ=59.7497;PV4=0.4,1,0.18695,1 GT:PL 0/1:87,0,99
Scaffold_1 1123452 . T C 67.0074 PASS DP=7;VDB=0.535497;SGB=-0.556411;RPB=0.607698;MQB=0.607698;MQSB=0.810265;BQB=0.405132;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,1;MQ=56;FQ=66.4765;PV4=0.485714,0.0801406,0.126749,0.218294 GT:PL 0/1:97,0,96
Scaffold_1 1123466 . A G 88.0076 PASS DP=7;VDB=0.573211;SGB=-0.556411;RPB=0.810265;MQB=0.607698;MQSB=0.810265;BQB=0.607698;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,3,1;MQ=56;FQ=68.9882;PV4=0.485714,0.101555,0.126749,0.218294 GT:PL 0/1:118,0,96
Scaffold_1 1123478 . C T 70.0074 PASS DP=8;VDB=0.610267;SGB=-0.556411;RPB=0.992367;MQB=0.62023;MQSB=0.900802;BQB=0.62023;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,3,1;MQ=57;FQ=73.0069;PV4=1,0.0865265,0.0888911,1 GT:PL 0/1:100,0,127
Scaffold_1 1123499 . A C 50.0072 PASS DP=9;VDB=0.882013;SGB=-0.590765;RPB=0.974597;MQB=0.406082;MQSB=0.730948;BQB=0.649731;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,3,2;MQ=53;FQ=53.0132;PV4=1,0.297016,0.0672155,0.363888 GT:PL 0/1:80,0,113
Scaffold_1 1123513 . G A 66.0074 PASS DP=8;VDB=0.646346;SGB=-0.556411;RPB=0.868321;MQB=0.248092;MQSB=0.868321;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,2,2;MQ=52;FQ=68.9983;PV4=1,1,0.0392789,1 GT:PL 0/1:96,0,120
Scaffold_1 1123538 . T C 68.0074 PASS DP=8;VDB=0.771524;SGB=-0.590765;RPB=0.750668;MQB=0.300267;MQSB=0.900802;BQB=0.750668;MQ0F=0.125;AF1=0.5;AC1=1;DP4=2,1,3,2;MQ=47;FQ=53.9295;PV4=1,1,0.0436234,0.477421 GT:PL 0/1:98,0,81
Scaffold_1 1123541 . T C 68.0074 PASS DP=8;VDB=0.771524;SGB=-0.590765;RPB=0.750668;MQB=0.300267;MQSB=0.900802;BQB=0.900802;MQ0F=0.125;AF1=0.5;AC1=1;DP4=2,1,3,2;MQ=47;FQ=64.8222;PV4=1,1,0.0436234,0.397798 GT:PL 0/1:98,0,93
Scaffold_1 1123545 . T A 56.0072 PASS DP=8;VDB=0.757606;SGB=-0.590765;RPB=0.750668;MQB=0.300267;MQSB=0.900802;BQB=0.900802;MQ0F=0.125;AF1=0.5;AC1=1;DP4=2,1,3,2;MQ=47;FQ=58.2253;PV4=1,0.240809,0.0436234,0.289499 GT:PL 0/1:86,0,93
Scaffold_1 1123556 . A G 38.0077 PASS DP=7;VDB=0.281254;SGB=-0.556411;RPB=0.810265;MQB=0.202566;MQSB=1.01283;BQB=1.01283;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=2,1,2,2;MQ=45;FQ=41.0086;PV4=1,1,0.0143714,1 GT:PL 0/1:68,0,96
Scaffold_1 1123565 . T C 38.0077 PASS DP=7;VDB=0.275912;SGB=-0.556411;RPB=0.810265;MQB=0.202566;MQSB=1.01283;BQB=0.810265;MQ0F=0.142857;AF1=0.5;AC1=1;DP4=2,1,2,2;MQ=45;FQ=41.0086;PV4=1,0.218294,0.0143714,1 GT:PL 0/1:68,0,96
Scaffold_1 1123572 . C G 32.0097 PASS DP=8;VDB=0.27062;SGB=-0.556411;RPB=0.62023;MQB=0.124046;MQSB=0.900802;BQB=0.868321;MQ0F=0.125;AF1=0.5;AC1=1;DP4=3,1,2,2;MQ=47;FQ=35.0164;PV4=1,1,0.00570197,1 GT:PL 0/1:62,0,115
Scaffold_1 1123587 . A C 33.0091 PASS DP=9;VDB=0.265379;SGB=-0.556411;RPB=0.406082;MQB=0.0812164;MQSB=0.809011;BQB=0.974597;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=4,1,2,2;MQ=49;FQ=36.0162;PV4=0.52381,1,0.00229903,1 GT:PL 0/1:63,0,138
Scaffold_1 1123588 . C A 33.0091 PASS DP=9;VDB=0.275912;SGB=-0.556411;RPB=0.406082;MQB=0.0812164;MQSB=0.809011;BQB=0.974597;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=4,1,2,2;MQ=49;FQ=36.0162;PV4=0.52381,1,0.00229903,0.47491 GT:PL 0/1:63,0,143
Scaffold_1 1123748 . G A 16.1143 PASS DP=13;VDB=0.06;SGB=-0.453602;RPB=0.4;MQB=1;MQSB=1;BQB=1;MQ0F=0;AF1=0.499994;AC1=1;DP4=7,3,1,1;MQ=60;FQ=19.069;PV4=1,1,1,1 GT:PL 0/1:46,0,243
Scaffold_1 1123749 . A G 38.0077 PASS DP=14;VDB=0.0349627;SGB=-0.511536;RPB=0.599223;MQB=1;MQSB=1;BQB=0.646383;MQ0F=0;AF1=0.5;AC1=1;DP4=7,4,1,2;MQ=60;FQ=41.0155;PV4=0.538462,0.486167,1,1 GT:PL 0/1:68,0,251
Scaffold_1 1123756 . C T 36.0081 PASS DP=16;VDB=0.0312982;SGB=-0.511536;RPB=0.895064;MQB=1;MQSB=1;BQB=0.964448;MQ0F=0;AF1=0.5;AC1=1;DP4=9,4,1,2;MQ=60;FQ=39.0157;PV4=0.517857,0.366728,1,1 GT:PL 0/1:66,0,255
Scaffold_1 1123772 . A G 46.0072 PASS DP=19;VDB=0.0949329;SGB=-0.556411;RPB=0.697047;MQB=0.758573;MQSB=0.883327;BQB=0.977696;MQ0F=0;AF1=0.5;AC1=1;DP4=10,4,1,3;MQ=58;FQ=49.0153;PV4=0.245098,0.403799,0.0292893,1 GT:PL 0/1:76,0,255
Scaffold_1 1123773 . T C 29.0123 PASS DP=19;VDB=0.0949329;SGB=-0.556411;RPB=0.697047;MQB=0.758573;MQSB=0.883327;BQB=0.758573;MQ0F=0;AF1=0.5;AC1=1;DP4=10,4,1,3;MQ=58;FQ=32.0178;PV4=0.245098,0.257175,0.0292893,1 GT:PL 0/1:59,0,255
Scaffold_1 1123781 . A G 41.0074 PASS DP=19;VDB=0.0949329;SGB=-0.556411;RPB=0.793923;MQB=0.762744;MQSB=0.887766;BQB=0.594978;MQ0F=0;AF1=0.5;AC1=1;DP4=9,4,1,3;MQ=58;FQ=44.0154;PV4=0.25,0.281517,0.0347154,1 GT:PL 0/1:71,0,255
Scaffold_1 1123798 . T C 71.0074 PASS DP=19;VDB=0.304345;SGB=-0.590765;RPB=0.573753;MQB=0.449329;MQSB=0.621145;BQB=0.998612;MQ0F=0;AF1=0.5;AC1=1;DP4=9,3,1,4;MQ=57;FQ=74.0156;PV4=0.100679,0.417176,0.0155171,0.491319 GT:PL 0/1:101,0,255
Scaffold_1 1123825 . G C 21.0411 PASS DP=20;VDB=0.38486;SGB=-0.556411;RPB=1;MQB=0.331124;MQSB=0.729213;BQB=0.868509;MQ0F=0;AF1=0.499998;AC1=1;DP4=9,5,0,4;MQ=57;FQ=24.0321;PV4=0.0823529,0.369034,0.0034478,1 GT:PL 0/1:51,0,255
Scaffold_1 1123827 . T C 42.0073 PASS DP=20;VDB=0.0922732;SGB=-0.556411;RPB=0.933253;MQB=0.758573;MQSB=0.883327;BQB=0.868509;MQ0F=0;AF1=0.5;AC1=1;DP4=10,4,1,3;MQ=58;FQ=45.0154;PV4=0.245098,1,0.0292893,1 GT:PL 0/1:72,0,255
Scaffold_1 1123840 . A G 63.0073 PASS DP=18;VDB=0.296473;SGB=-0.590765;RPB=0.863325;MQB=0.439968;MQSB=0.729213;BQB=0.957217;MQ0F=0;AF1=0.5;AC1=1;DP4=8,5,1,4;MQ=57;FQ=66.0155;PV4=0.294118,1,0.0121758,1 GT:PL 0/1:93,0,255
Scaffold_1 1123995 . C T 25.0205 PASS DP=7;VDB=0.22;SGB=-0.453602;RPB=0.8;MQB=0.5;MQSB=0.810265;BQB=0.8;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,2,0,2;MQ=58;FQ=28.0219;PV4=0.428571,1,0.0586934,1 GT:PL 0/1:55,0,145
Scaffold_1 1123997 . A G 20.0499 PASS DP=7;VDB=0.26;SGB=-0.453602;RPB=1;MQB=0.5;MQSB=0.75;BQB=0.625;MQ0F=0;AF1=0.499997;AC1=1;DP4=2,2,0,2;MQ=58;FQ=23.0366;PV4=0.466667,0.163555,0.0889039,1 GT:PL 0/1:50,0,129
Scaffold_1 1124010 . A C 22.0341 PASS DP=9;VDB=0.26;SGB=-0.453602;RPB=0.4;MQB=0.5;MQSB=1;BQB=1;MQ0F=0;AF1=0.499998;AC1=1;DP4=1,4,0,2;MQ=58;FQ=25.0286;PV4=1,1,0.0586934,1 GT:PL 0/1:52,0,134
Scaffold_1 1124032 . G A 10.42 PASS DP=12;VDB=0.26;SGB=-0.453602;RPB=0.4;MQB=0.5;MQSB=0.896474;BQB=0.7;MQ0F=0;AF1=0.499975;AC1=1;DP4=5,5,0,2;MQ=59;FQ=13.2265;PV4=0.469697,1,0.00809854,1 GT:PL 0/1:40,0,239
Scaffold_1 1124053 . A G 13.2188 PASS DP=12;VDB=0.26;SGB=-0.453602;RPB=0.111111;MQB=0.5;MQSB=0.891517;BQB=0.666667;MQ0F=0;AF1=0.499987;AC1=1;DP4=5,4,0,2;MQ=59;FQ=16.1222;PV4=0.454545,1,0.0119282,1 GT:PL 0/1:43,0,229
Scaffold_1 1124377 . G A 15.1417 PASS DP=9;VDB=0.84;SGB=-0.453602;RPB=0.714286;MQB=0;MQSB=0.487298;BQB=0.5;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,5,2,0;MQ=57;FQ=18.0829;PV4=0.166667,0.0261782,0.00171193,0.455116 GT:PL 0/1:45,0,198
Scaffold_1 1124398 . T A 12.272 PASS DP=11;VDB=0.84;SGB=-0.453602;RPB=0.944444;MQB=0;MQSB=0.564628;BQB=0.666667;MQ0F=0;AF1=0.499984;AC1=1;DP4=3,6,2,0;MQ=58;FQ=15.1496;PV4=0.181818,1,0.000350109,1 GT:PL 0/1:42,0,221
Scaffold_1 1124497 . T C 18.0749 PASS DP=12;VDB=0.9;SGB=-0.453602;RPB=0.785714;MQB=0;MQSB=0.649731;BQB=0.857143;MQ0F=0;AF1=0.499996;AC1=1;DP4=3,4,2,0;MQ=57;FQ=21.0492;PV4=0.444444,0.481034,3.92841e-07,0.0601482 GT:PL 0/1:48,0,205
Scaffold_1 1124513 . A G 54.0072 PASS DP=12;VDB=0.148533;SGB=-0.511536;RPB=0.124514;MQB=0.0497871;MQSB=0.8618;BQB=0.655816;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,2,1;MQ=58;FQ=57.0154;PV4=1,1,0.000237527,0.125632 GT:PL 0/1:84,0,221
Scaffold_1 1124537 . C A 53.0072 PASS DP=11;VDB=0.0860477;SGB=-0.511536;RPB=0.366593;MQB=0.0916482;MQSB=0.761877;BQB=0.824834;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,2,1;MQ=57;FQ=56.0154;PV4=1,1,0.000575079,1 GT:PL 0/1:83,0,183
Scaffold_1 1124539 . A G 57.0073 PASS DP=11;VDB=0.0822145;SGB=-0.511536;RPB=0.733186;MQB=0.0916482;MQSB=0.761877;BQB=0.641538;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,2,1;MQ=57;FQ=60.0154;PV4=1,1,0.000575079,1 GT:PL 0/1:87,0,195
Scaffold_1 1124544 . G A 57.0073 PASS DP=10;VDB=0.0714862;SGB=-0.511536;RPB=0.824834;MQB=0.0916482;MQSB=0.761877;BQB=0.916482;MQ0F=0;AF1=0.5;AC1=1;DP4=3,4,2,1;MQ=57;FQ=60.0154;PV4=1,1,0.000575079,1 GT:PL 0/1:87,0,191
Scaffold_1 1124545 . G A 60.0073 PASS DP=10;VDB=0.0714862;SGB=-0.511536;RPB=0.924584;MQB=0.115573;MQSB=0.649731;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,2,1;MQ=57;FQ=63.0154;PV4=0.52381,1,0.00139917,1 GT:PL 0/1:90,0,171
Scaffold_1 1124550 . C T 63.0073 PASS DP=10;VDB=0.0618664;SGB=-0.511536;RPB=0.900802;MQB=0.150134;MQSB=0.450401;BQB=0.900802;MQ0F=0;AF1=0.5;AC1=1;DP4=1,4,2,1;MQ=57;FQ=66.0155;PV4=0.464286,1,0.00342497,1 GT:PL 0/1:93,0,147
Scaffold_1 1124552 . A G 60.0073 PASS DP=10;VDB=0.0588947;SGB=-0.511536;RPB=0.924584;MQB=0.115573;MQSB=0.649731;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,2,1;MQ=57;FQ=63.0154;PV4=0.52381,1,0.00139917,1 GT:PL 0/1:90,0,179
Scaffold_1 1124555 . A C 54.0072 PASS DP=11;VDB=0.0588947;SGB=-0.511536;RPB=1;MQB=0.0497871;MQSB=0.8618;BQB=0.655816;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,2,1;MQ=58;FQ=57.0154;PV4=1,1,0.000237527,1 GT:PL 0/1:84,0,207
Scaffold_1 1124558 . G C 54.0072 PASS DP=11;VDB=0.0481133;SGB=-0.511536;RPB=1;MQB=0.0497871;MQSB=0.8618;BQB=0.655816;MQ0F=0;AF1=0.5;AC1=1;DP4=4,4,2,1;MQ=58;FQ=57.0154;PV4=1,1,0.000237527,1 GT:PL 0/1:84,0,192
Scaffold_1 1124572 . A G 84.0076 PASS DP=10;VDB=0.206745;SGB=-0.556411;RPB=0.895781;MQB=0.0559863;MQSB=0.952347;BQB=1.00775;MQ0F=0;AF1=0.5;AC1=1;DP4=3,3,2,2;MQ=56;FQ=87.0157;PV4=1,0.334633,0.000922282,1 GT:PL 0/1:114,0,174
Scaffold_1 1124720 . C T 31.0104 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=0;MQSB=0.333333;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,0,2;MQ=54;FQ=34.0146;PV4=0.4,1,0,1 GT:PL 0/1:61,0,94
Scaffold_1 1126933 . G A 25.0314 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.501255;AC1=1;DP4=0,1,0,2;MQ=60;FQ=-5.44696;PV4=1,1,1,1 GT:PL 0/1:55,0,23
Scaffold_1 1129145 . C A 33.0091 PASS DP=4;VDB=0.02;SGB=-0.453602;RPB=1;MQB=1;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=2,0,2,0;MQ=60;FQ=33.0069;PV4=1,1,1,1 GT:PL 0/1:63,0,63
Scaffold_1 1138701 . G T 92.5135 PASS DP=4;VDB=0.348933;SGB=-0.556411;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,1;MQ=60;FQ=-38.9864 GT:PL 1/1:125,12,0
Scaffold_1 1142816 . G A 10.42 PASS DP=12;VDB=0.02;SGB=-0.453602;RPB=0.4;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499975;AC1=1;DP4=4,6,0,2;MQ=60;FQ=13.2265;PV4=0.515152,1,1,1 GT:PL 0/1:40,0,213
Scaffold_1 1145334 . A G 10.42 PASS DP=16;VDB=0.348933;SGB=-0.556411;RPB=0.655406;MQB=0.0270518;MQSB=0.973096;BQB=0.977751;MQ0F=0;AF1=0.499975;AC1=1;DP4=7,3,4,0;MQ=49;FQ=13.2265;PV4=0.505495,0.388936,5.29003e-05,1 GT:PL 0/1:40,0,220
Scaffold_1 1145439 . A T 60.0073 PASS DP=17;VDB=0.125187;SGB=-0.616816;RPB=0.994135;MQB=0.0137291;MQSB=0.0337682;BQB=0.887703;MQ0F=0;AF1=0.5;AC1=1;DP4=4,6,6,0;MQ=49;FQ=63.0154;PV4=0.0338412,0.219201,6.27445e-05,0.212509 GT:PL 0/1:90,0,245
Scaffold_1 1145440 . T C 33.0091 PASS DP=17;VDB=0.390954;SGB=-0.556411;RPB=1;MQB=0.213108;MQSB=0.0337682;BQB=0.971017;MQ0F=0;AF1=0.5;AC1=1;DP4=6,6,4,0;MQ=49;FQ=36.0162;PV4=0.233516,0.386961,0.060908,0.348816 GT:PL 0/1:63,0,255
Scaffold_1 1145468 . A G 72.0074 PASS DP=15;VDB=0.031576;SGB=-0.616816;RPB=0.586646;MQB=0.00822975;MQSB=0.0672055;BQB=0.875173;MQ0F=0;AF1=0.5;AC1=1;DP4=2,6,6,0;MQ=50;FQ=75.0156;PV4=0.00965701,1,1.14059e-07,1 GT:PL 0/1:102,0,200
Scaffold_1 1145469 . A G 15.1417 PASS DP=16;VDB=0.192436;SGB=-0.511536;RPB=0.352866;MQB=0.252182;MQSB=0.105399;BQB=1;MQ0F=0;AF1=0.499992;AC1=1;DP4=6,6,3,0;MQ=51;FQ=18.0829;PV4=0.228571,1,0.0459092,1 GT:PL 0/1:45,0,248
Scaffold_1 1145492 . C T 13.2188 PASS DP=13;VDB=0.0649539;SGB=-0.511536;RPB=0.485672;MQB=0.0853036;MQSB=0.236382;BQB=0.760709;MQ0F=0;AF1=0.499987;AC1=1;DP4=5,4,3,0;MQ=51;FQ=16.1222;PV4=0.490909,1,0.00106104,1 GT:PL 0/1:43,0,209
Scaffold_1 1145493 . A G 59.0073 PASS DP=13;VDB=0.0243383;SGB=-0.590765;RPB=0.0643861;MQB=0.0137638;MQSB=0.187475;BQB=0.679965;MQ0F=0;AF1=0.5;AC1=1;DP4=3,5,5,0;MQ=52;FQ=62.0154;PV4=0.0753691,1,6.45202e-07,1 GT:PL 0/1:89,0,185
Scaffold_1 1145517 . T C 10.42 PASS DP=12;VDB=0.0249187;SGB=-0.511536;RPB=0.0443614;MQB=0.0443614;MQSB=0.253351;BQB=0.707404;MQ0F=0;AF1=0.499975;AC1=1;DP4=2,7,3,0;MQ=54;FQ=13.2265;PV4=0.0454545,1,3.05554e-08,0.000436791 GT:PL 0/1:40,0,215
Scaffold_1 1145575 . A G 39.0076 PASS DP=9;VDB=0.301053;SGB=-0.511536;RPB=0.115573;MQB=0.115573;MQSB=0.462292;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=1,5,2,1;MQ=54;FQ=42.0155;PV4=0.22619,0.112549,0,0.0971966 GT:PL 0/1:69,0,162
Scaffold_1 1145604 . G A 65.0073 PASS DP=16;VDB=0.0229453;SGB=-0.616816;RPB=0.0747118;MQB=0.0137291;MQSB=0.935966;BQB=0.948436;MQ0F=0;AF1=0.5;AC1=1;DP4=4,6,0,6;MQ=49;FQ=68.0155;PV4=0.233516,1,8.94768e-05,0.439397 GT:PL 0/1:95,0,246
Scaffold_1 1145638 . C G 13.2188 PASS DP=18;VDB=0.0871199;SGB=-0.556411;RPB=0.832083;MQB=0.410777;MQSB=0.964448;BQB=0.767432;MQ0F=0;AF1=0.499987;AC1=1;DP4=3,9,0,4;MQ=46;FQ=16.1222;PV4=0.528571,0.161195,0.122562,1 GT:PL 0/1:43,0,237
Scaffold_1 1145639 . C T 15.1417 PASS DP=18;VDB=0.292086;SGB=-0.556411;RPB=0.526752;MQB=0.156835;MQSB=0.982301;BQB=0.793923;MQ0F=0;AF1=0.499992;AC1=1;DP4=3,10,0,4;MQ=46;FQ=18.0829;PV4=0.541176,0.455303,0.00854604,1 GT:PL 0/1:45,0,246
Scaffold_1 1145673 . T A 18.0749 PASS DP=18;VDB=0.281254;SGB=-0.556411;RPB=1;MQB=0.346864;MQSB=0.678571;BQB=0.861658;MQ0F=0;AF1=0.499996;AC1=1;DP4=2,10,0,4;MQ=44;FQ=21.0492;PV4=1,0.19609,0.0610496,1 GT:PL 0/1:48,0,219
Scaffold_1 1145676 . G C 22.0341 PASS DP=20;VDB=0.284843;SGB=-0.590765;RPB=0.983003;MQB=0.151072;MQSB=0.25634;BQB=0.97357;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,10,0,5;MQ=45;FQ=25.0286;PV4=0.530444,0.357249,0.0149258,1 GT:PL 0/1:52,0,251
Scaffold_1 1145700 . T A 16.1143 PASS DP=20;VDB=0.233642;SGB=-0.590765;RPB=0.759391;MQB=0.121991;MQSB=0.0764263;BQB=0.234906;MQ0F=0;AF1=0.499994;AC1=1;DP4=4,11,0,5;MQ=46;FQ=19.069;PV4=0.530444,0.00510838,0.0100913,0.251376 GT:PL 0/1:46,0,255
Scaffold_1 1145706 . T A 21.0411 PASS DP=18;VDB=0.233642;SGB=-0.590765;RPB=0.412539;MQB=0.157651;MQSB=0.0652634;BQB=0.225857;MQ0F=0;AF1=0.499998;AC1=1;DP4=4,9,0,5;MQ=45;FQ=24.0321;PV4=0.277778,0.00738899,0.0153172,0.0194423 GT:PL 0/1:51,0,255
Scaffold_1 1145751 . A T 15.1417 PASS DP=10;VDB=0.94;SGB=-0.453602;RPB=0.9375;MQB=0.25;MQSB=0.333321;BQB=0.75;MQ0F=0;AF1=0.499992;AC1=1;DP4=5,3,0,2;MQ=53;FQ=18.0829;PV4=0.444444,1,0.205516,0.00022927 GT:PL 0/1:45,0,190
Scaffold_1 1149985 . T C 69.0074 PASS DP=10;VDB=0.0058656;SGB=-0.556411;RPB=0.503877;MQB=1.00775;MQSB=1.00775;BQB=1.00775;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,4,0;MQ=60;FQ=72.0156;PV4=0.0761905,0.450865,1,1 GT:PL 0/1:99,0,172
Scaffold_1 1155008 . G T 10.42 PASS DP=12;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.777778;MQ0F=0;AF1=0.499975;AC1=1;DP4=8,1,2,0;MQ=60;FQ=13.2265;PV4=1,1,1,1 GT:PL 0/1:40,0,178
Scaffold_1 1179238 . G T 104.008 PASS DP=11;VDB=0.582158;SGB=-0.616816;RPB=0.8618;MQB=0.950952;MQSB=0.964642;BQB=0.683497;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,1,5;MQ=60;FQ=102.252;PV4=0.242424,0.319417,1,1 GT:PL 0/1:134,0,131
Scaffold_1 1180388 . C T 134.008 PASS DP=11;VDB=0.76871;SGB=-0.616816;RPB=0.891517;MQB=0.950952;MQSB=0.950952;BQB=0.891517;MQ0F=0;AF1=0.5;AC1=1;DP4=3,2,3,3;MQ=60;FQ=92.0157;PV4=1,1,1,1 GT:PL 0/1:164,0,119
Scaffold_1 1185249 . A T 98.0078 PASS DP=12;VDB=0.530437;SGB=-0.590765;RPB=0.760054;MQB=0.95494;MQSB=0.95494;BQB=0.838008;MQ0F=0;AF1=0.5;AC1=1;DP4=4,3,1,4;MQ=60;FQ=101.016;PV4=0.292929,0.127491,1,0.308877 GT:PL 0/1:128,0,199
Scaffold_1 1185747 . A T 22.0341 PASS DP=5;VDB=0.74;SGB=-0.453602;RPB=1;MQB=1;MQSB=1;BQB=0.75;MQ0F=0;AF1=0.499998;AC1=1;DP4=1,1,0,2;MQ=60;FQ=24.8596;PV4=1,0.281574,1,1 GT:PL 0/1:52,0,66
Scaffold_1 1185999 . T C 144.008 PASS DP=12;VDB=0.173752;SGB=-0.636426;RPB=0.916482;MQB=0.916482;MQSB=1;BQB=0.733186;MQ0F=0;AF1=0.5;AC1=1;DP4=3,0,6,1;MQ=60;FQ=81.0157;PV4=1,0.0145253,1,1 GT:PL 0/1:174,0,108
Scaffold_1 1187439 . A T 113.019 PASS DP=7;VDB=0.383239;SGB=-0.590765;RPB=1;MQB=1;MQSB=0.861511;BQB=1;MQ0F=0;AF1=0.501256;AC1=1;DP4=0,1,3,2;MQ=60;FQ=-5.445;PV4=1,0.260875,1,0.352 GT:PL 0/1:143,0,23
Scaffold_1 1189322 . A G 144.008 PASS DP=19;VDB=0.326789;SGB=-0.636426;RPB=0.393241;MQB=1;MQSB=1;BQB=0.367442;MQ0F=0;AF1=0.5;AC1=1;DP4=7,3,4,3;MQ=60;FQ=147.017;PV4=0.643665,0.111623,1,0.236644 GT:PL 0/1:174,0,255
Scaffold_1 1189432 . C T 42.0075 PASS DP=6;VDB=0.607612;SGB=-0.511536;RPB=0.333333;MQB=1;MQSB=1;BQB=0.833333;MQ0F=0;AF1=0.50002;AC1=1;DP4=2,0,1,2;MQ=60;FQ=14.1805;PV4=0.4,1,1,0.425437 GT:PL 0/1:72,0,41
Scaffold_1 1190439 . C T 11.3381 PASS DP=16;VDB=0.354794;SGB=-0.511536;RPB=0.944459;MQB=0.040184;MQSB=0.748798;BQB=0.968368;MQ0F=0;AF1=0.49998;AC1=1;DP4=7,3,3,0;MQ=55;FQ=14.1838;PV4=0.527972,0.361342,1.14461e-05,1 GT:PL 0/1:41,0,249
Scaffold_1 1190675 . C T 11.3381 PASS DP=24;VDB=0.202231;SGB=-0.556411;RPB=0.798036;MQB=0.0342868;MQSB=0.977529;BQB=0.119833;MQ0F=0;AF1=0.49998;AC1=1;DP4=11,6,1,3;MQ=54;FQ=14.1838;PV4=0.27218,0.0803018,0.00269231,1 GT:PL 0/1:41,0,255
Scaffold_1 1190676 . A G 64.0073 PASS DP=24;VDB=0.105076;SGB=-0.616816;RPB=0.178719;MQB=0.00247875;MQSB=0.993528;BQB=0.902225;MQ0F=0;AF1=0.5;AC1=1;DP4=8,6,3,3;MQ=53;FQ=67.0155;PV4=1,0.494088,1.14839e-07,1 GT:PL 0/1:94,0,255
Scaffold_1 1190698 . G A 31.0104 PASS DP=25;VDB=0.220638;SGB=-0.556411;RPB=0.318907;MQB=0.0386015;MQSB=0.707715;BQB=0.972484;MQ0F=0;AF1=0.5;AC1=1;DP4=9,7,1,3;MQ=53;FQ=34.0168;PV4=0.582043,1,0.00374086,0.261818 GT:PL 0/1:61,0,255
Scaffold_1 1192111 . A T 63.0073 PASS DP=8;VDB=0.779245;SGB=-0.511536;RPB=0.450401;MQB=0.900802;MQSB=1;BQB=0.450401;MQ0F=0;AF1=0.5;AC1=1;DP4=0,5,2,1;MQ=60;FQ=65.9472;PV4=0.107143,1,1,0.0176635 GT:PL 0/1:93,0,111
Scaffold_1 1193777 . T A 99.0078 PASS DP=15;VDB=0.178985;SGB=-0.590765;RPB=0.154295;MQB=1;MQSB=1;BQB=0.867428;MQ0F=0;AF1=0.5;AC1=1;DP4=4,5,1,4;MQ=60;FQ=102.016;PV4=0.58042,1,1,0.354149 GT:PL 0/1:129,0,221
Scaffold_1 1199441 . C T 65.0073 PASS DP=14;VDB=0.0201525;SGB=-0.590765;RPB=0.965069;MQB=0.197899;MQSB=0.301194;BQB=0.197899;MQ0F=0;AF1=0.5;AC1=1;DP4=6,3,2,3;MQ=56;FQ=68.0155;PV4=0.58042,0.0172014,0.0131539,1 GT:PL 0/1:95,0,230
Scaffold_1 1199451 . T C 39.0076 PASS DP=14;VDB=0.0257451;SGB=-0.556411;RPB=0.878264;MQB=0.397295;MQSB=0.584657;BQB=0.94394;MQ0F=0;AF1=0.5;AC1=1;DP4=5,3,2,2;MQ=56;FQ=42.0155;PV4=1,0.287712,0.0179181,1 GT:PL 0/1:69,0,206
Scaffold_1 1201885 . G C 93.0077 PASS DP=18;VDB=0.996496;SGB=-0.616816;RPB=0.85394;MQB=1;MQSB=1;BQB=0.503936;MQ0F=0;AF1=0.5;AC1=1;DP4=6,6,4,2;MQ=60;FQ=96.0159;PV4=0.638009,0.0881875,1,0.146132 GT:PL 0/1:123,0,255
Scaffold_1 1206167 . T G 131.008 PASS DP=9;VDB=0.329692;SGB=-0.616816;RPB=0.924584;MQB=0.924584;MQSB=1;BQB=0.809011;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,1,5;MQ=60;FQ=49.0153;PV4=1,1,1,1 GT:PL 0/1:161,0,76
Scaffold_1 1206311 . C T 97.0078 PASS DP=8;VDB=0.337235;SGB=-0.556411;RPB=0.62023;MQB=0.992367;MQSB=0.992367;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,2,2;MQ=60;FQ=84.8805;PV4=1,1,1,0.177959 GT:PL 0/1:127,0,112
Scaffold_1 1206417 . T C 27.0155 PASS DP=7;VDB=0.52;SGB=-0.453602;RPB=0.6;MQB=0.8;MQSB=0.810265;BQB=0.9;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,3,1,1;MQ=59;FQ=30.0194;PV4=1,1,1,1 GT:PL 0/1:57,0,149
Scaffold_1 1209862 . C A 103.008 PASS DP=13;VDB=0.324419;SGB=-0.590765;RPB=0.564628;MQB=0.950952;MQSB=1;BQB=0.891517;MQ0F=0;AF1=0.5;AC1=1;DP4=2,4,1,4;MQ=60;FQ=106.016;PV4=1,0.197487,1,1 GT:PL 0/1:133,0,186
Scaffold_1 1210405 . G A 220.009 PASS DP=14;VDB=0.774083;SGB=-0.662043;RPB=0.304076;MQB=1;MQSB=0.961166;BQB=0.97357;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,5,4;MQ=60;FQ=79.0156;PV4=1,1,1,1 GT:PL 0/1:250,0,106
Scaffold_1 1214559 . C T 125.769 PASS DP=7;VDB=0.858134;SGB=-0.590765;RPB=1;MQB=1;MQSB=0.5;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=1,0,3,2;MQ=53;FQ=-26.9944;PV4=1,0.270735,1,0.197736 GT:PL 0/1:154,0,0
Scaffold_1 1214720 . C T 185.515 PASS DP=14;VDB=0.687358;SGB=-0.662043;RPB=0.382304;MQB=0.104279;MQSB=0.6821;BQB=0.857404;MQ0F=0.214286;AF1=1;AC1=2;DP4=2,1,5,4;MQ=32;FQ=-38.9864;PV4=1,1,1,0.158498 GT:PL 1/1:218,12,0
Scaffold_1 1214825 . C T 176.515 PASS DP=15;VDB=0.551647;SGB=-0.670168;RPB=0.884706;MQB=0.0183156;MQSB=0.405555;BQB=0.884706;MQ0F=0.333333;AF1=1;AC1=2;DP4=2,2,8,2;MQ=32;FQ=-38.9864;PV4=0.52048,0.0644386,1,1 GT:PL 1/1:209,12,0
Scaffold_1 1214835 . G A 144.514 PASS DP=14;VDB=0.659505;SGB=-0.670168;RPB=0.852144;MQB=0.0183156;MQSB=0.0467706;BQB=0.816687;MQ0F=0.285714;AF1=1;AC1=2;DP4=1,3,9,1;MQ=32;FQ=-38.9864;PV4=0.040959,0.171123,1,0.0999709 GT:PL 1/1:177,12,0
Scaffold_1 1214851 . G A 127.194 PASS DP=14;VDB=0.583058;SGB=-0.662043;RPB=0.99778;MQB=0.011109;MQSB=0.105399;BQB=0.99778;MQ0F=0.357143;AF1=1;AC1=2;DP4=2,3,8,1;MQ=30;FQ=-34.9872;PV4=0.0949051,0.48638,1,0.113504 GT:PL 1/1:159,8,0
Scaffold_1 1214889 . G A 94.0129 PASS DP=14;VDB=0.788273;SGB=-0.590765;RPB=0.89338;MQB=0.0812164;MQSB=0.231146;BQB=0.487298;MQ0F=0.428571;AF1=1;AC1=2;DP4=1,3,5,0;MQ=30;FQ=-29.9901;PV4=0.047619,1,1,1 GT:PL 1/1:124,3,0
Scaffold_1 1214984 . A T 222.006 PASS DP=15;VDB=0.471997;SGB=-0.683931;RPB=1;MQB=1;MQSB=0.777382;BQB=1;MQ0F=0.133333;AF1=1;AC1=2;DP4=0,1,7,6;MQ=47;FQ=-57.9861;PV4=1,1,1,0.27705 GT:PL 1/1:255,31,0
Scaffold_1 1215014 . G A 222.003 PASS DP=17;VDB=0.468537;SGB=-0.686358;RPB=1;MQB=1;MQSB=0.477935;BQB=1;MQ0F=0.0588235;AF1=1;AC1=2;DP4=0,1,7,7;MQ=50;FQ=-59.9861;PV4=1,0.355019,1,1 GT:PL 1/1:255,33,0
Scaffold_1 1215018 . C T 222.003 PASS DP=16;VDB=0.229729;SGB=-0.686358;RPB=1;MQB=1;MQSB=0.431591;BQB=1;MQ0F=0.0625;AF1=1;AC1=2;DP4=0,1,6,8;MQ=52;FQ=-59.9861;PV4=1,1,1,1 GT:PL 1/1:255,33,0
Scaffold_1 1215055 . G A 222 PASS DP=15;VDB=0.23502;SGB=-0.686358;MQSB=0.428703;MQ0F=0;AF1=1;AC1=2;DP4=0,0,7,7;MQ=56;FQ=-68.9862 GT:PL 1/1:255,42,0
Scaffold_1 1215134 . C T 165.009 PASS DP=13;VDB=0.278975;SGB=-0.636426;RPB=0.924449;MQB=0.964642;MQSB=0.964642;BQB=0.763675;MQ0F=0;AF1=0.5;AC1=1;DP4=1,3,6,1;MQ=60;FQ=68.0155;PV4=0.0878788,1,1,1 GT:PL 0/1:195,0,95
Scaffold_1 1215445 . A G 90.0077 PASS DP=19;VDB=0.0886428;SGB=-0.590765;RPB=0.0110379;MQB=0.0181208;MQSB=0.490777;BQB=0.960687;MQ0F=0.157895;AF1=0.5;AC1=1;DP4=9,2,1,4;MQ=39;FQ=37.016;PV4=0.0357143,1,1,1 GT:PL 0/1:120,0,64
Scaffold_1 1215483 . G A 13.4629 PASS DP=15;VDB=0.292572;SGB=-0.590765;MQSB=0.5;MQ0F=0.133333;AF1=1;AC1=2;DP4=0,0,3,2;MQ=19;FQ=-41.9863 GT:PL 1/1:46,15,0
Scaffold_1 1215539 . G A 30.0116 PASS DP=18;VDB=0.374631;SGB=-0.590765;RPB=0.6821;MQB=0.584657;MQSB=1;BQB=0.506703;MQ0F=0.111111;AF1=0.500039;AC1=1;DP4=6,1,5,0;MQ=20;FQ=11.3204;PV4=1,1,1,1 GT:PL 0/1:60,0,38
Scaffold_1 1215590 . A G 11.4378 PASS DP=14;VDB=0.928942;SGB=-0.590765;RPB=0.487298;MQB=0.730948;MQSB=1;BQB=0.730948;MQ0F=0.285714;AF1=0.512832;AC1=1;DP4=4,0,4,1;MQ=16;FQ=-14.1623;PV4=1,1,1,0.0447106 GT:PL 0/1:41,0,13
Scaffold_1 1220117 . G T 73.0291 PASS DP=8;VDB=0.0625499;SGB=-0.556411;RPB=0.124046;MQB=0.124046;MQSB=0.124046;BQB=0.62023;MQ0F=0;AF1=0.502513;AC1=1;DP4=0,4,4,0;MQ=30;FQ=-7.77799;PV4=0.0285714,1,1,0.0804435 GT:PL 0/1:103,0,20
Scaffold_1 1220125 . G C 73.0291 PASS DP=8;VDB=0.0587288;SGB=-0.556411;RPB=0.124046;MQB=0.124046;MQSB=0.124046;BQB=0.992367;MQ0F=0;AF1=0.502513;AC1=1;DP4=0,4,4,0;MQ=30;FQ=-7.77799;PV4=0.0285714,1,1,0.177959 GT:PL 0/1:103,0,20
Scaffold_1 1220167 . T A 115.115 PASS DP=11;VDB=0.137644;SGB=-0.636426;RPB=0.0401934;MQB=0.0401934;MQSB=0.0401934;BQB=0.964642;MQ0F=0;AF1=0.512852;AC1=1;DP4=0,4,7,0;MQ=33;FQ=-14.1556;PV4=0.0030303,1,1,1 GT:PL 0/1:145,0,13
Scaffold_1 1220194 . T C 103.46 PASS DP=9;VDB=0.134494;SGB=-0.636426;RPB=0.142857;MQB=0;MQSB=0;BQB=0.714286;MQ0F=0;AF1=0.829413;AC1=1;DP4=0,2,7,0;MQ=36;FQ=-25.9966;PV4=0.0277778,0.245527,1,1 GT:PL 0/1:132,0,1
Scaffold_1 1220225 . G A 156.413 PASS DP=12;VDB=0.987785;SGB=-0.670168;RPB=1;MQB=1;MQSB=0;BQB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,1,9,1;MQ=42;FQ=-39.9863;PV4=0.181818,1,1,1 GT:PL 1/1:189,13,0
Scaffold_1 1220226 . G A 161.016 PASS DP=12;VDB=0.823388;SGB=-0.662043;MQSB=1;MQ0F=0;AF1=1;AC1=2;DP4=0,0,8,1;MQ=44;FQ=-53.9861 GT:PL 1/1:194,27,0
Scaffold_1 1220346 . T C 101.008 PASS DP=16;VDB=0.651328;SGB=-0.616816;RPB=0.209611;MQB=0.499352;MQSB=0.146957;BQB=0.778801;MQ0F=0;AF1=0.5;AC1=1;DP4=6,3,5,1;MQ=54;FQ=104.016;PV4=0.604396,1,0.0721385,0.254398 GT:PL 0/1:131,0,217
Scaffold_1 1228009 . G T 161.009 PASS DP=11;VDB=0.175312;SGB=-0.616816;RPB=0.462292;MQB=0.924584;MQSB=0.974597;BQB=0.924584;MQ0F=0;AF1=0.5;AC1=1;DP4=2,1,3,3;MQ=60;FQ=59.0154;PV4=1,1,1,0.168028 GT:PL 0/1:191,0,86
Scaffold_1 1228072 . C T 109.008 PASS DP=12;VDB=0.879762;SGB=-0.590765;RPB=0.838008;MQB=0.95494;MQSB=1;BQB=0.95494;MQ0F=0;AF1=0.5;AC1=1;DP4=2,5,2,3;MQ=60;FQ=112.016;PV4=1,1,1,0.490822 GT:PL 0/1:139,0,183
Scaffold_1 1228908 . C T 225.01 PASS DP=25;VDB=0.674722;SGB=-0.689466;RPB=0.509932;MQB=0.00312216;MQSB=0.053431;BQB=0.236382;MQ0F=0.12;AF1=0.500063;AC1=1;DP4=7,2,6,10;MQ=38;FQ=9.5281;PV4=0.0968421,0.0353384,1,0.0699266 GT:PL 0/1:255,0,36
Scaffold_1 1229086 . G A 202.009 PASS DP=32;VDB=0.228979;SGB=-0.686358;RPB=0.997859;MQB=0.0306246;MQSB=0.693763;BQB=0.960561;MQ0F=0.21875;AF1=0.5;AC1=1;DP4=7,8,6,8;MQ=27;FQ=59.0154;PV4=1,0.210172,1,1 GT:PL 0/1:232,0,86
Scaffold_1 1229120 . A T 127.008 PASS DP=25;VDB=0.215483;SGB=-0.651104;RPB=0.997919;MQB=0.00909054;MQSB=0.995682;BQB=0.811936;MQ0F=0.24;AF1=0.5;AC1=1;DP4=6,9,4,4;MQ=24;FQ=42.0155;PV4=0.685018,1,1,0.474828 GT:PL 0/1:157,0,69
Scaffold_1 1229162 . C A 35.0084 PASS DP=16;VDB=0.6146;SGB=-0.590765;RPB=0.945959;MQB=0.308647;MQSB=1;BQB=0.980199;MQ0F=0.1875;AF1=0.500006;AC1=1;DP4=0,9,1,4;MQ=21;FQ=19.0154;PV4=0.357143,1,1,0.151493 GT:PL 0/1:65,0,46
Scaffold_1 1229292 . C T 129.133 PASS DP=12;VDB=0.15874;SGB=-0.670168;RPB=0.3;MQB=0.1;MQSB=0.1;BQB=0.35;MQ0F=0.25;AF1=1;AC1=2;DP4=1,1,1,9;MQ=31;FQ=-44.9861;PV4=0.318182,1,1,1 GT:PL 1/1:162,18,0
Scaffold_1 1229302 . G T 92.0077 PASS DP=12;VDB=0.0549273;SGB=-0.616816;RPB=0.813189;MQB=0.0847072;MQSB=0.1;BQB=0.660716;MQ0F=0.25;AF1=0.500001;AC1=1;DP4=2,4,0,6;MQ=31;FQ=27.0236;PV4=0.454545,1,1,1 GT:PL 0/1:122,0,54
Scaffold_1 1229358 . C T 83.0618 PASS DP=17;VDB=0.00740154;SGB=-0.616816;RPB=0.0580147;MQB=0.00710427;MQSB=0.0516335;BQB=0.809155;MQ0F=0.235294;AF1=0.50636;AC1=1;DP4=7,3,0,6;MQ=24;FQ=-11.3185;PV4=0.0113636,1,1,1 GT:PL 0/1:113,0,16
Scaffold_1 1231146 . C T 80.011 PASS DP=10;VDB=0.578781;SGB=-0.616816;RPB=0.895781;MQB=0.167959;MQSB=1;BQB=0.783809;MQ0F=0;AF1=0.500397;AC1=1;DP4=4,0,5,1;MQ=31;FQ=3.54723;PV4=1,1,1,0.223407 GT:PL 0/1:110,0,28
Scaffold_1 1231155 . C T 80.011 PASS DP=10;VDB=0.578781;SGB=-0.616816;RPB=0.895781;MQB=0.167959;MQSB=1;BQB=1.00775;MQ0F=0;AF1=0.500397;AC1=1;DP4=4,0,5,1;MQ=31;FQ=3.54723;PV4=1,1,1,1 GT:PL 0/1:110,0,28
Scaffold_1 1231221 . C T 56.0072 PASS DP=12;VDB=0.115226;SGB=-0.636426;RPB=0.935451;MQB=0.95494;MQSB=0.0974428;BQB=0.838008;MQ0F=0.25;AF1=0.500001;AC1=1;DP4=4,1,3,4;MQ=29;FQ=28.0184;PV4=0.292929,1,1,1 GT:PL 0/1:86,0,55
Scaffold_1 1231225 . C T 43.0074 PASS DP=12;VDB=0.115226;SGB=-0.636426;RPB=0.935451;MQB=0.95494;MQSB=0.0974428;BQB=0.896474;MQ0F=0.25;AF1=0.50001;AC1=1;DP4=4,1,3,4;MQ=29;FQ=17.095;PV4=0.292929,1,1,1 GT:PL 0/1:73,0,44
Scaffold_1 1231286 . G A 68.0074 PASS DP=15;VDB=0.119929;SGB=-0.651104;RPB=0.898397;MQB=0.898397;MQSB=0.129812;BQB=0.993326;MQ0F=0.2;AF1=0.5;AC1=1;DP4=1,6,2,6;MQ=26;FQ=51.961;PV4=1,0.154702,1,0.384735 GT:PL 0/1:98,0,79
Scaffold_1 1231298 . A T 30.0112 PASS DP=17;VDB=0.210092;SGB=-0.590765;RPB=0.655816;MQB=0.859096;MQSB=0.5;BQB=0.829029;MQ0F=0.176471;AF1=0.5;AC1=1;DP4=1,9,1,4;MQ=30;FQ=33.0172;PV4=1,1,1,1 GT:PL 0/1:60,0,110
Scaffold_1 1231302 . T A 41.0074 PASS DP=17;VDB=0.206846;SGB=-0.590765;RPB=0.492881;MQB=0.793727;MQSB=0.464286;BQB=0.427987;MQ0F=0.176471;AF1=0.5;AC1=1;DP4=1,10,1,4;MQ=29;FQ=44.0151;PV4=1,1,1,1 GT:PL 0/1:71,0,113
Scaffold_1 1231326 . C T 108.008 PASS DP=18;VDB=0.175312;SGB=-0.616816;RPB=0.315707;MQB=0.165056;MQSB=0.216663;BQB=1;MQ0F=0;AF1=0.5;AC1=1;DP4=1,9,2,4;MQ=33;FQ=75.0145;PV4=0.517857,0.326083,1,0.419264 GT:PL 0/1:138,0,102
Scaffold_1 1231341 . T C 26.0177 PASS DP=17;VDB=0.348672;SGB=-0.616816;RPB=0.948436;MQB=0.459351;MQSB=0.216663;BQB=0.976745;MQ0F=0;AF1=0.499999;AC1=1;DP4=2,8,1,5;MQ=33;FQ=29.0205;PV4=1,1,0.142406,0.103539 GT:PL 0/1:56,0,177
Scaffold_1 1231367 . G A 148.009 PASS DP=18;VDB=0.361713;SGB=-0.676189;RPB=0.823561;MQB=0.338073;MQSB=0.285714;BQB=0.697005;MQ0F=0;AF1=0.500079;AC1=1;DP4=0,5,2,9;MQ=33;FQ=8.65167;PV4=1,0.415787,1,1 GT:PL 0/1:178,0,35
Scaffold_1 1231389 . C T 132.008 PASS DP=16;VDB=0.353119;SGB=-0.662043;RPB=0.146993;MQB=0.994413;MQSB=0.979844;BQB=0.994413;MQ0F=0.0625;AF1=0.5;AC1=1;DP4=0,7,3,6;MQ=36;FQ=65.0155;PV4=0.2125,0.256041,1,1 GT:PL 0/1:162,0,92
Scaffold_1 1231654 . C A 36.1285 PASS DP=4;VDB=0.14;SGB=-0.453602;RPB=0;MQB=0;MQSB=1;BQB=0.5;MQ0F=0.5;AF1=1;AC1=2;DP4=1,1,2,0;MQ=42;FQ=-27.9926;PV4=1,1,1,1 GT:PL 1/1:65,1,0
Scaffold_1 1231883 . C T 24.4748 PASS DP=9;VDB=0.18;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0.6;BQB=1;MQ0F=0.777778;AF1=0.829412;AC1=1;DP4=2,3,0,2;MQ=21;FQ=-25.9966;PV4=1,0.35476,1,1 GT:PL 0/1:53,0,1
Scaffold_1 1231885 . C G 24.4748 PASS DP=9;VDB=0.18;SGB=-0.453602;RPB=0.6;MQB=0;MQSB=0.6;BQB=0.8;MQ0F=0.777778;AF1=0.829412;AC1=1;DP4=2,3,0,2;MQ=21;FQ=-25.9966;PV4=1,0.216199,1,1 GT:PL 0/1:53,0,1
Scaffold_1 1231947 . C T 51.5417 PASS DP=8;VDB=0.172729;SGB=-0.511536;RPB=0.900802;MQB=0.150134;BQB=0.900802;MQ0F=0.625;AF1=1;AC1=2;DP4=0,5,0,3;MQ=24;FQ=-28.9912;PV4=1,1,1,1 GT:PL 1/1:81,2,0
Scaffold_1 1232369 . A G 32.5152 PASS DP=4;VDB=0.497461;SGB=-0.556411;MQ0F=0;AF1=1;AC1=2;DP4=0,0,4,0;MQ=28;FQ=-38.9864 GT:PL 1/1:65,12,0
Scaffold_1 1235130 . C T 61.9723 PASS DP=3;VDB=0.0941126;SGB=-0.511536;MQ0F=0;AF1=1;AC1=2;DP4=0,0,3,0;MQ=40;FQ=-35.9869 GT:PL 1/1:94,9,0
Scaffold_1 1245746 . G T 19.061 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.499997;AC1=1;DP4=2,4,0,2;MQ=60;FQ=22.0421;PV4=1,0.209877,1,1 GT:PL 0/1:49,0,177
Scaffold_1 1250056 . G T 17.0924 PASS DP=12;VDB=0.535497;SGB=-0.556411;RPB=0.562708;MQB=0.442128;BQB=0.562708;MQ0F=0;AF1=0.499995;AC1=1;DP4=7,0,4,0;MQ=55;FQ=20.058;PV4=1,1,0.0208574,0.389896 GT:PL 0/1:47,0,138
Scaffold_1 1255091 . C A 28.0137 PASS DP=8;VDB=0.02;SGB=-0.453602;RPB=0.5;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,2,0;MQ=60;FQ=31.0184;PV4=0.466667,1,1,0.289462 GT:PL 0/1:58,0,109
Scaffold_1 1265878 . C A 23.0285 PASS DP=5;VDB=0.02;SGB=-0.453602;RPB=0;MQB=1;BQB=0.5;MQ0F=0;AF1=0.499999;AC1=1;DP4=3,0,2,0;MQ=60;FQ=25.891;PV4=1,1,1,1 GT:PL 0/1:53,0,68
Scaffold_1 1267539 . G T 15.1417 PASS DP=6;VDB=0.56;SGB=-0.453602;RPB=0;MQB=1;MQSB=1;BQB=0.5;MQ0F=0;AF1=0.499992;AC1=1;DP4=3,0,0,2;MQ=57;FQ=18.0829;PV4=0.1,0.176051,1,1 GT:PL 0/1:45,0,92
Scaffold_1 1269347 . G A 34.0087 PASS DP=8;VDB=0.0221621;SGB=-0.511536;RPB=0.900802;MQB=0.900802;MQSB=0.900802;BQB=0.750668;MQ0F=0;AF1=0.5;AC1=1;DP4=2,3,3,0;MQ=60;FQ=37.016;PV4=0.196429,0.225134,1,1 GT:PL 0/1:64,0,141
Scaffold_1 1269357 . T C 31.0104 PASS DP=7;VDB=0.02;SGB=-0.453602;RPB=0.666667;MQB=1;MQSB=1;BQB=0.666667;MQ0F=0;AF1=0.5;AC1=1;DP4=0,3,2,0;MQ=60;FQ=34.0059;PV4=0.1,1,1,1 GT:PL 0/1:61,0,87
Scaffold_1 1281298 . A T 45.0072 PASS DP=9;VDB=0.0221621;SGB=-0.511536;RPB=0.202566;MQB=0.202566;MQSB=0.2;BQB=0.810265;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,3,0;MQ=49;FQ=48.0153;PV4=0.428571,0.218294,0.00413281,0.201321 GT:PL 0/1:75,0,149
Scaffold_1 1281324 . G T 40.0075 PASS DP=9;VDB=0.0221621;SGB=-0.511536;RPB=0.150134;MQB=0.150134;MQSB=0.124046;BQB=0.900802;MQ0F=0.111111;AF1=0.5;AC1=1;DP4=1,4,3,0;MQ=49;FQ=43.0154;PV4=0.142857,1,0.00501373,1 GT:PL 0/1:70,0,134
Scaffold_1 1281328 . G C 47.0072 PASS DP=9;VDB=0.161792;SGB=-0.590765;RPB=0.150134;MQB=0.150134;MQSB=0.600535;BQB=0.750668;MQ0F=0.222222;AF1=0.5;AC1=1;DP4=1,2,4,1;MQ=41;FQ=49.9076;PV4=0.464286,0.138163,0.018587,0.421868 GT:PL 0/1:77,0,93
Scaffold_1 1281349 . T C 52.0072 PASS DP=9;VDB=0.218338;SGB=-0.616816;RPB=0.115573;MQB=0.115573;MQSB=0.809011;BQB=0.809011;MQ0F=0.222222;AF1=0.5;AC1=1;DP4=1,2,5,1;MQ=37;FQ=53.5599;PV4=0.22619,0.205046,0.0169334,0.247427 GT:PL 0/1:82,0,86
Scaffold_1 1281372 . T A 53.0072 PASS DP=10;VDB=0.218338;SGB=-0.616816;RPB=0.503877;MQB=0.0559863;MQSB=0.503877;BQB=0.895781;MQ0F=0.2;AF1=0.5;AC1=1;DP4=1,3,5,1;MQ=38;FQ=56.0067;PV4=0.190476,1,0.00869265,1 GT:PL 0/1:83,0,110
Scaffold_1 1281384 . C T 47.0072 PASS DP=10;VDB=0.210772;SGB=-0.616816;RPB=0.503877;MQB=0.0559863;MQSB=0.503877;BQB=1.00775;MQ0F=0.2;AF1=0.5;AC1=1;DP4=1,3,5,1;MQ=38;FQ=50.0044;PV4=0.190476,1,0.00869265,1 GT:PL 0/1:77,0,103
Scaffold_1 1281408 . A C 56.0073 PASS DP=8;VDB=0.218338;SGB=-0.616816;RPB=1;MQB=0;MQSB=0.916667;BQB=0.916667;MQ0F=0.25;AF1=0.500001;AC1=1;DP4=1,1,5,1;MQ=33;FQ=27.0209;PV4=0.464286,0.351093,0.0531961,1 GT:PL 0/1:86,0,54
Scaffold_1 1281417 . T C 51.0073 PASS DP=8;VDB=0.218338;SGB=-0.616816;RPB=1;MQB=0;MQSB=0.916667;BQB=0.5;MQ0F=0.25;AF1=0.500008;AC1=1;DP4=1,1,5,1;MQ=33;FQ=18.0819;PV4=0.464286,1,0.0531961,1 GT:PL 0/1:81,0,45
Scaffold_1 1281529 . A G 15.1417 PASS DP=7;VDB=0.14;SGB=-0.453602;RPB=0;MQB=0;MQSB=0.5;BQB=0.5;MQ0F=0;AF1=0.499992;AC1=1;DP4=2,2,0,2;MQ=53;FQ=18.0829;PV4=0.466667,0.0889039,0.000612458,0.0421049 GT:PL 0/1:45,0,133
Scaffold_1 1281539 . A G 36.0081 PASS DP=8;VDB=0.036866;SGB=-0.556411;RPB=0.124046;MQB=0.124046;MQSB=0.333333;BQB=0.372138;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,4;MQ=49;FQ=39.0157;PV4=0.428571,0.06116,0.000498936,0.108812 GT:PL 0/1:66,0,124
Scaffold_1 1281583 . C A 54.0072 PASS DP=8;VDB=0.0298006;SGB=-0.556411;RPB=0.202566;MQB=0.202566;MQSB=1;BQB=0.607698;MQ0F=0;AF1=0.5;AC1=1;DP4=1,2,0,4;MQ=47;FQ=57.0119;PV4=0.428571,0.129028,0.00198654,1 GT:PL 0/1:84,0,115
Scaffold_1 1281591 . G A 36.0081 PASS DP=10;VDB=0.0320192;SGB=-0.556411;RPB=0.992367;MQB=0.124046;MQSB=0.333333;BQB=0.868321;MQ0F=0;AF1=0.5;AC1=1;DP4=2,2,0,4;MQ=49;FQ=39.0157;PV4=0.428571,0.274491,0.000498936,1 GT:PL 0/1:66,0,120