install.R

install.packages("BiocManager")
options(BioC_mirror="https://ftp.gwdg.de/pub/misc/bioconductor")
BiocManager::install(c("BSgenome.Hsapiens.UCSC.hg38","Biostrings","BiocStyle","ComplexHeatmap",
                     "GenomicRanges","MultiAssayExperiment","RColorBrewer","Seurat",
                     "ShortRead","SingleCellExperiment","SummarizedExperiment","airway",
                     "cowplot","dplyr","edgeR","ggplot2","knitr","limma","readr",
                     "CATALYST","diffcyt","scran",
                     "rtracklayer","stringr","tibble","tidyr","magrittr",
                     "pheatmap","CellBench","ExperimentHub","clustree"), version="3.11", quiet=TRUE)

#BiocManager::install("tidyverse")
#BiocManager::install(c("usethis", "git2r", "devtools", "remotes"))
#BiocManager::install(c("mzR", "MSnbase"))
#BiocManager::install("UCLouvain-CBIO/rWSBIM1207")