# For finding latest versions of the base image see # https://github.com/SwissDataScienceCenter/renkulab-docker ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.9-0.10.1 FROM ${RENKU_BASE_IMAGE} # Uncomment and adapt if code is to be included in the image # COPY src /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # except for the last end with backslash '\' to continue the RUN line # # USER root # RUN apt-get update && \ # apt-get install -y --no-install-recommends \ # apt-utils \ # vim # USER ${NB_USER} # install the python dependencies COPY requirements.txt environment.yml /tmp/ RUN conda env update -q -f /tmp/environment.yml && \ /opt/conda/bin/pip install -r /tmp/requirements.txt && \ conda clean -y --all && \ conda env export -n "root" # Add jupytext configuration # Copy jupytext's jupyter config to open md and script files as notebooks by default. RUN mkdir -p ${HOME}/.jupyter/labconfig COPY labconfig/*json ${HOME}/.jupyter/labconfig # RENKU_VERSION determines the version of the renku CLI # that will be used in this image. To find the latest version, # visit https://pypi.org/project/renku/#history. ARG RENKU_VERSION=1.1.1 ######################################################## # Do not edit this section and do not add anything below # Install renku from pypi or from github if it's a dev version RUN if [ -n "$RENKU_VERSION" ] ; then \ source .renku/venv/bin/activate ; \ currentversion=$(renku --version) ; \ if [ "$RENKU_VERSION" != "$currentversion" ] ; then \ pip uninstall renku -y ; \ gitversion=$(echo "$RENKU_VERSION" | sed -n "s/^[[:digit:]]\+\.[[:digit:]]\+\.[[:digit:]]\+\(\.dev[[:digit:]]\+\)*\(+g\([a-f0-9]\+\)\)*\(+dirty\)*$/\3/p") ; \ if [ -n "$gitversion" ] ; then \ pip install --force "git+https://github.com/SwissDataScienceCenter/renku-python.git@$gitversion" ;\ else \ pip install --force renku==${RENKU_VERSION} ;\ fi \ fi \ fi ########################################################