Commit 30f624c7 authored by Cyril Matthey-Doret's avatar Cyril Matthey-Doret Committed by renku 0.16.2
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service: renku init -n "jupytext-example" -s...

service: renku init -n "jupytext-example" -s "https://github.com/SwissDataScienceCenter/renku-pro...
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data
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.git
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# Renku
.renku.lock
.renku/tmp
.renku/cache
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variables:
GIT_STRATEGY: fetch
GIT_SSL_NO_VERIFY: "true"
GIT_LFS_SKIP_SMUDGE: 1
stages:
- build
image_build:
stage: build
image: docker:stable
before_script:
- docker login -u gitlab-ci-token -p $CI_JOB_TOKEN http://$CI_REGISTRY
script: |
CI_COMMIT_SHA_7=$(echo $CI_COMMIT_SHA | cut -c1-7)
docker build --tag $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7 .
docker push $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7
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'@id': https://renkulab.io/projects/cyril.matthey-doret/jupytext-example
'@type':
- http://schema.org/Project
- http://www.w3.org/ns/prov#Location
http://schema.org/agent: 0.16.2
http://schema.org/creator:
'@id': mailto:cyril.matthey-doret@epfl.ch
'@type':
- http://schema.org/Person
- http://www.w3.org/ns/prov#Person
http://schema.org/affiliation: null
http://schema.org/alternateName: null
http://schema.org/email: cyril.matthey-doret@epfl.ch
http://schema.org/name: Cyril Matthey-Doret
http://www.w3.org/2000/01/rdf-schema#label: Cyril Matthey-Doret
http://schema.org/dateCreated: '2022-02-01T16:13:21.840128+00:00'
http://schema.org/name: jupytext-example
http://schema.org/schemaVersion: '8'
https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: false
https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: []
https://swissdatasciencecenter.github.io/renku-ontology#templateId: python-minimal
https://swissdatasciencecenter.github.io/renku-ontology#templateMetadata: '{"__template_source__":
"https://github.com/SwissDataScienceCenter/renku-project-template", "__template_ref__":
"0.2.1", "__template_id__": "python-minimal", "__namespace__": "cyril.matthey-doret",
"__automated_update__": true, "__repository__": "https://renkulab.io/gitlab", "__sanitized_project_name__":
"jupytext-example", "__project_slug__": "cyril.matthey-doret/jupytext-example",
"__renku_version__": "0.16.2", "name": "jupytext-example"}'
https://swissdatasciencecenter.github.io/renku-ontology#templateReference: 0.2.1
https://swissdatasciencecenter.github.io/renku-ontology#templateSource: https://github.com/SwissDataScienceCenter/renku-project-template
https://swissdatasciencecenter.github.io/renku-ontology#templateVersion: ee01a22fe6cfb6b8af1f631919e784fa3efd5c6d
[renku "interactive"]
default_url = /lab
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{".dockerignore": "46625726a43957a07c38550b006dd352ef85af18f7b984a1a87284001d03713a", ".gitignore": "acf97db7a418d0d0bef1f5e7b6838260802cf1f3f99a8e725313c381f946ac00", ".gitlab-ci.yml": "309bfbc0e2851600908f0fc430e8a41345146dca2b98eb0908f21cc1796db8ce", ".renku/renku.ini": "187a51794112821730b021723717f6680a277cc25fa07838b2e2c541a619b0a1", ".renkulfsignore": "25702085882005ad576e6e51259eba461306b6b4be069361d54f3926d941ecfb", "Dockerfile": "06e7e56cbef4c20be31e54b5dbac232a3ceb3f0d5cea2281af4841925d8c7559", "README.md": "edf8efed67d31058b5de818bc9927a7e7f500737862b6b048562ee81ae45a771", "data/.gitkeep": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "environment.yml": "f91b4d74abed097afebcfa125fd3de20614384a6555d864e4ac304fee375b27e", "notebooks/.gitkeep": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "requirements.txt": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"}
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# WARNING: editing this file will impact the behavior of renku commands
# by telling renku to *not track* listed files with git LFS.
#
# By default, renku commands track all files above the renku configured lfs_threshold
# with git LFS to prevent accidentally checking in large files (default=100kb).
# You can update this threshold by calling 'renku config lfs_threshold <size>kb'.
#
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# the size of your repo, and could slow things down.
#
# See https://github.com/SwissDataScienceCenter/renku-project-template for proper
# usage.
# Warning: modifying the next line will check generated ipynb files (e.g. from papermill) into LFS:
# they will no longer be displayed in the renku UI
*.ipynb
*.py
*.r
*.md
*.rst
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# For finding latest versions of the base image see
# https://github.com/SwissDataScienceCenter/renkulab-docker
ARG RENKU_BASE_IMAGE=renku/renkulab-py:3.9-0.10.1
FROM ${RENKU_BASE_IMAGE}
# Uncomment and adapt if code is to be included in the image
# COPY src /code/src
# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
# except for the last end with backslash '\' to continue the RUN line
#
# USER root
# RUN apt-get update && \
# apt-get install -y --no-install-recommends \
# apt-utils \
# vim
# USER ${NB_USER}
# install the python dependencies
COPY requirements.txt environment.yml /tmp/
RUN conda env update -q -f /tmp/environment.yml && \
/opt/conda/bin/pip install -r /tmp/requirements.txt && \
conda clean -y --all && \
conda env export -n "root"
# RENKU_VERSION determines the version of the renku CLI
# that will be used in this image. To find the latest version,
# visit https://pypi.org/project/renku/#history.
ARG RENKU_VERSION=0.16.2
########################################################
# Do not edit this section and do not add anything below
# Install renku from pypi or from github if it's a dev version
RUN if [ -n "$RENKU_VERSION" ] ; then \
source .renku/venv/bin/activate ; \
currentversion=$(renku --version) ; \
if [ "$RENKU_VERSION" != "$currentversion" ] ; then \
pip uninstall renku -y ; \
gitversion=$(echo "$RENKU_VERSION" | sed -n "s/^[[:digit:]]\+\.[[:digit:]]\+\.[[:digit:]]\+\(\.dev[[:digit:]]\+\)*\(+g\([a-f0-9]\+\)\)*\(+dirty\)*$/\3/p") ; \
if [ -n "$gitversion" ] ; then \
pip install --force "git+https://github.com/SwissDataScienceCenter/renku-python.git@$gitversion" ;\
else \
pip install --force renku==${RENKU_VERSION} ;\
fi \
fi \
fi
########################################################
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# jupytext-example
## Introduction
This is a Renku project - basically a git repository with some
bells and whistles. You'll find we have already created some
useful things like `data` and `notebooks` directories and
a `Dockerfile`.
## Working with the project
The simplest way to start your project is right from the Renku
platform - just click on the `Environments` tab and start a new session.
This will start an interactive environment right in your browser.
To work with the project anywhere outside the Renku platform,
click the `Settings` tab where you will find the
git repo URLs - use `git` to clone the project on whichever machine you want.
### Changing interactive environment dependencies
Initially we install a very minimal set of packages to keep the images small.
However, you can add python and conda packages in `requirements.txt` and
`environment.yml` to your heart's content. If you need more fine-grained
control over your environment, please see [the documentation](https://renku.readthedocs.io/en/latest/user/advanced_interfaces.html#dockerfile-modifications).
## Project configuration
Project options can be found in `.renku/renku.ini`. In this
project there is currently only one option, which specifies
the default type of environment to open, in this case `/lab` for
JupyterLab. You may also choose `/tree` to get to the "classic" Jupyter
interface.
## Moving forward
Once you feel at home with your project, we recommend that you replace
this README file with your own project documentation! Happy data wrangling!
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name: "base"
channels:
- defaults
# dependencies:
# - add packages here
# - one per line
prefix: "/opt/conda"
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