FROM renku/singleuser-r:0.4.4-renku0.9.0 RUN pipx install renku=='0.9.1' --force # Uncomment and adapt if code is to be included in the image # COPY src /code/src # Uncomment and adapt if your R or python packages require extra linux (ubuntu) software # e.g. the following installs apt-utils and vim; each pkg on its own line, all lines # except for the last end with backslash '\' to continue the RUN line # USER root RUN chmod -R 777 /usr/local/lib/R/site-library RUN apt-get update && \ apt-get install -y --no-install-recommends \ apt-utils \ texlive \ texlive-extra-utils \ texlive-bibtex-extra \ texlive-latex-base \ texlive-latex-recommended \ texlive-latex-extra \ texlive-full \ texlive-font-utils \ texlive-fonts-extra \ libnetcdf-dev \ netcdf-bin \ libhdf5-dev \ libgit2-dev # vim USER ${NB_USER} # install the R dependencies COPY install.R /tmp/ RUN R -f /tmp/install.R # install the python dependencies COPY requirements.txt /tmp/ RUN pip3 install -r /tmp/requirements.txt RUN pip3 install jupyter-rsession-proxy==1.2.0 jupyter-server-proxy==1.5.0