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FROM renku/singleuser-r:0.4.4-renku0.9.0
RUN pipx install renku=='0.9.1' --force
# Uncomment and adapt if code is to be included in the image
# COPY src /code/src
# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
# except for the last end with backslash '\' to continue the RUN line
#
RUN apt-get update && \
apt-get install -y --no-install-recommends \
texlive \
texlive-extra-utils \
texlive-bibtex-extra \
libnetcdf-dev \
netcdf-bin \
libhdf5-dev \
libgit2-dev
## RUN echo "options(defaultPackages=c(getOption('defaultPackages'),'renkur'))" >> /usr/local/lib/R/etc/Rprofile.site
# install the R dependencies
COPY install.R /tmp/
RUN R -f /tmp/install.R
# install the python dependencies
COPY requirements.txt /tmp/
RUN pip3 install -r /tmp/requirements.txt