Skip to content
install.R 608 B
Newer Older
Laurent Gatto's avatar
Laurent Gatto committed
## CRAN dependencies
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("rmarkdown")
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install(c("usethis", "git2r", "devtools", "remotes"))
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("tidyverse")
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("DT")
BiocManager::install("patchwork")
Laurent Gatto's avatar
Laurent Gatto committed

## Bioconductor dependencies
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("SummarizedExperiment")
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("DESeq2")
BiocManager::install("biomaRt")
BiocManager::install("org.Hs.eg.db")
Laurent Gatto's avatar
Laurent Gatto committed

## Remotes dependencies
Laurent Gatto's avatar
Laurent Gatto committed
BiocManager::install("UCLouvain-CBIO/rWSBIM2122")
Laurent Gatto's avatar
Laurent Gatto committed

Laurent Gatto's avatar
Laurent Gatto committed
## Install and load renkur, to use it in Addins menu
Laurent Gatto's avatar
Laurent Gatto committed
devtools::install_git("https://renkulab.io/gitlab/cchoirat/renkur.git")
library(renkur)