.renku/activity_index.yaml

@@ -15,6 +15,8 @@ data/some_data_test_process/dim_red_some_data_test.mtx.gz:
   - .renku/workflow/a934048544c843f192d5ec5f4fe6bc9f_rerun.yaml
   c06f90d3ff584275fc79a58cf20713217e24bd53:
   - .renku/workflow/98d0ec25e5da4d63bb4f48241bb69d43_rerun.yaml
+  c10a3d70bd71157adb986496c2611fc6692e04da:
+  - .renku/workflow/a64495e872a74ff089cf62da7a192b12_rerun.yaml
   c9339935808c79deb11d9c2599a58dd66b640281:
   - .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml
   fa1bd5fa5acb91a5dcfe11bc0b09002382e33704:
@@ -36,6 +38,8 @@ data/some_data_test_process/hvg_some_data_test.json:
   - .renku/workflow/a934048544c843f192d5ec5f4fe6bc9f_rerun.yaml
   c06f90d3ff584275fc79a58cf20713217e24bd53:
   - .renku/workflow/98d0ec25e5da4d63bb4f48241bb69d43_rerun.yaml
+  c10a3d70bd71157adb986496c2611fc6692e04da:
+  - .renku/workflow/a64495e872a74ff089cf62da7a192b12_rerun.yaml
   c9339935808c79deb11d9c2599a58dd66b640281:
   - .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml
   fa1bd5fa5acb91a5dcfe11bc0b09002382e33704:
@@ -57,6 +61,8 @@ data/some_data_test_process/norm_counts_some_data_test.mtx.gz:
   - .renku/workflow/a934048544c843f192d5ec5f4fe6bc9f_rerun.yaml
   c06f90d3ff584275fc79a58cf20713217e24bd53:
   - .renku/workflow/98d0ec25e5da4d63bb4f48241bb69d43_rerun.yaml
+  c10a3d70bd71157adb986496c2611fc6692e04da:
+  - .renku/workflow/a64495e872a74ff089cf62da7a192b12_rerun.yaml
   c9339935808c79deb11d9c2599a58dd66b640281:
   - .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml
   fa1bd5fa5acb91a5dcfe11bc0b09002382e33704:
@@ -78,6 +84,8 @@ log/process_some_data_test.Rout:
   - .renku/workflow/a934048544c843f192d5ec5f4fe6bc9f_rerun.yaml
   c06f90d3ff584275fc79a58cf20713217e24bd53:
   - .renku/workflow/98d0ec25e5da4d63bb4f48241bb69d43_rerun.yaml
+  c10a3d70bd71157adb986496c2611fc6692e04da:
+  - .renku/workflow/a64495e872a74ff089cf62da7a192b12_rerun.yaml
   c9339935808c79deb11d9c2599a58dd66b640281:
   - .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml
   fa1bd5fa5acb91a5dcfe11bc0b09002382e33704:

.renku/provenance.json

@@ -37,6 +37,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/4bced624-e9be-4b46-9a0e-72de168d4209"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c"
       }
     ]
   },
@@ -52,6 +55,181 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-22T21:29:12+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/2b0f3df3-a85e-4198-a972-c557f3badd2a/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/184e62f7-c553-43bd-a40b-6d6b012eb60b/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/f2417c33-4f63-4a42-87de-181113d780b9/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-22T21:29:12+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 12
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/0de3e15a-af10-4e7a-ac13-210301c65edb/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/264e6ef16fc94591b3e52b2d9cd51969"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/b1b18596-fea5-4d68-8800-e468628b4b35/ad64acc0205e5341e075a208e4bbebfb39d4e05f/log/process_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/e680d4cc-123b-4ad6-a597-c932fc7e6c5c/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/9038f457046345e0bec257c629651b93"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/eb9648f5-e9e1-4bba-a81c-a5864818e249/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/ff49016b79c844d49a35b35fb5973c6c"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/184e62f7-c553-43bd-a40b-6d6b012eb60b/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/b7fc3826f79d4df8958643002640ebdb"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/2b0f3df3-a85e-4198-a972-c557f3badd2a/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/usage/f2417c33-4f63-4a42-87de-181113d780b9/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/26c301364d9f4134b0d9ea82cac86b04"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/02f78f53-f38a-4369-8905-bac4cd464383",
     "@type": [
@@ -2026,6 +2204,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/4bced624-e9be-4b46-9a0e-72de168d4209/generation/eef35e48-7130-4b38-8b17-0fe99497996d/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/e680d4cc-123b-4ad6-a597-c932fc7e6c5c/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2240,6 +2421,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/ad64acc0205e5341e075a208e4bbebfb39d4e05f/log/process_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/process_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/process_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/b1b18596-fea5-4d68-8800-e468628b4b35/ad64acc0205e5341e075a208e4bbebfb39d4e05f/log/process_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "ad64acc0205e5341e075a208e4bbebfb39d4e05f"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
     "@type": [
@@ -2289,6 +2497,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/4bced624-e9be-4b46-9a0e-72de168d4209/generation/181a593e-d981-4a54-a8f2-f97a44f90593/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/0de3e15a-af10-4e7a-ac13-210301c65edb/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2395,6 +2606,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/4bced624-e9be-4b46-9a0e-72de168d4209/generation/891088f3-ca00-42fb-ad6e-0154ec656007/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/006b66ba-839b-46d2-8c98-168ab577b13c/generation/eb9648f5-e9e1-4bba-a81c-a5864818e249/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

log/process_some_data_test.Rout

@@ -327,4 +327,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
- 11.856   2.786  15.132 
+ 14.044   4.097  18.951