.renku/activity_index.yaml

@@ -5,6 +5,8 @@ data/some_data_test_process/dim_red_some_data_test.mtx.gz:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
+  50755a4930833037d6f426d3d6dd6595b1a95c42:
+  - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -30,6 +32,8 @@ data/some_data_test_process/hvg_some_data_test.json:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
+  50755a4930833037d6f426d3d6dd6595b1a95c42:
+  - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -55,6 +59,8 @@ data/some_data_test_process/norm_counts_some_data_test.mtx.gz:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
+  50755a4930833037d6f426d3d6dd6595b1a95c42:
+  - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -80,6 +86,8 @@ log/process_some_data_test.Rout:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
+  50755a4930833037d6f426d3d6dd6595b1a95c42:
+  - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:

.renku/provenance.json

@@ -43,6 +43,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959"
       }
     ]
   },
@@ -1283,6 +1286,181 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-05T21:11:23+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/af2edef1-3647-4a7e-b1b6-114068d8fc16/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/ab1c007a-3b9d-477e-bd14-2fa4b68466e3/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/7e8ee95c-9568-4869-9b68-b1ef2396e0de/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-05T21:11:23+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 14
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/1acdceb8-a475-4221-96d9-d29575e4fed6/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/9038f457046345e0bec257c629651b93"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/5f02524f-bdee-4488-bfd6-91cfac2d069a/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/264e6ef16fc94591b3e52b2d9cd51969"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/88d1f406-91dc-4e95-ae53-9d85290c9c65/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/b6e13a21-cc00-40fa-b813-372f4f025794/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/ff49016b79c844d49a35b35fb5973c6c"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/7e8ee95c-9568-4869-9b68-b1ef2396e0de/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/26c301364d9f4134b0d9ea82cac86b04"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/ab1c007a-3b9d-477e-bd14-2fa4b68466e3/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/b7fc3826f79d4df8958643002640ebdb"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/af2edef1-3647-4a7e-b1b6-114068d8fc16/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/6552d148-80fa-41de-ac67-5e45b6164515",
     "@type": [
@@ -2388,6 +2566,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/46056283-c0e5-424a-b267-64d4666bf1d7/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/1acdceb8-a475-4221-96d9-d29575e4fed6/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2684,6 +2865,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/51ffa625-a08e-4d19-b92d-55f5ab70f613/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/5f02524f-bdee-4488-bfd6-91cfac2d069a/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2719,6 +2903,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/process_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/process_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/88d1f406-91dc-4e95-ae53-9d85290c9c65/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "c758d6e75320b5bc32f1bd5c4c1206f929354b50"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R",
     "@type": [
@@ -2796,6 +3007,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/59632e3b-6a81-4b6e-9a1c-9bea7835b807/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/b6e13a21-cc00-40fa-b813-372f4f025794/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

log/process_some_data_test.Rout

@@ -327,4 +327,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
- 13.593   4.989  16.354 
+ 18.214   5.202  22.415