.renku/activity_index.yaml

@@ -3,6 +3,8 @@ data/some_data_test_process/dim_red_some_data_test.mtx.gz:
   - .renku/workflow/ed2b0a798d0a4edbabc1efc71d0f9d2e_rerun.yaml
   288004a9c71843e3fefa73754c04f74c86c9036e:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
+  31dab5fe2db152b4015572a56ba61e2f429f0232:
+  - .renku/workflow/7e37891cbe934a14bd80554b53cecfe2_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
@@ -30,6 +32,8 @@ data/some_data_test_process/hvg_some_data_test.json:
   - .renku/workflow/ed2b0a798d0a4edbabc1efc71d0f9d2e_rerun.yaml
   288004a9c71843e3fefa73754c04f74c86c9036e:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
+  31dab5fe2db152b4015572a56ba61e2f429f0232:
+  - .renku/workflow/7e37891cbe934a14bd80554b53cecfe2_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
@@ -57,6 +61,8 @@ data/some_data_test_process/norm_counts_some_data_test.mtx.gz:
   - .renku/workflow/ed2b0a798d0a4edbabc1efc71d0f9d2e_rerun.yaml
   288004a9c71843e3fefa73754c04f74c86c9036e:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
+  31dab5fe2db152b4015572a56ba61e2f429f0232:
+  - .renku/workflow/7e37891cbe934a14bd80554b53cecfe2_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
@@ -84,6 +90,8 @@ log/process_some_data_test.Rout:
   - .renku/workflow/ed2b0a798d0a4edbabc1efc71d0f9d2e_rerun.yaml
   288004a9c71843e3fefa73754c04f74c86c9036e:
   - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml
+  31dab5fe2db152b4015572a56ba61e2f429f0232:
+  - .renku/workflow/7e37891cbe934a14bd80554b53cecfe2_rerun.yaml
   42d09ea07527e4174aaa6e3cac7b8783d25b7474:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:

.renku/provenance.json

@@ -46,6 +46,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7784ccc8-6a20-4a1d-8dc1-bad0556cc28b"
+      },
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4"
       }
     ]
   },
@@ -1986,6 +1989,181 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-12T21:55:32+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/31fc4072-e52d-4d68-8682-ed45b74667b9/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/85c55345-71b1-411b-94f1-133a273df979/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/63616477-c238-46e7-a09e-3aa779ed2756/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-12T21:55:32+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 15
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/0acab229-f398-46e3-a7da-148c502c74ab/11805eaab591c9c64918398a09cf09e0ea1069de/log/process_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/349d2a78-03c1-44d6-8c05-a3609da1793b/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/264e6ef16fc94591b3e52b2d9cd51969"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/43dffb6e-9870-4de8-8d73-0420d54a8c77/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/ff49016b79c844d49a35b35fb5973c6c"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/6cf0a73a-d27b-418d-be25-553580932897/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/9038f457046345e0bec257c629651b93"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/31fc4072-e52d-4d68-8682-ed45b74667b9/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/63616477-c238-46e7-a09e-3aa779ed2756/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/26c301364d9f4134b0d9ea82cac86b04"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/usage/85c55345-71b1-411b-94f1-133a273df979/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/b7fc3826f79d4df8958643002640ebdb"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/c80e873e-2d85-41f7-a650-01f088595bfc",
     "@type": [
@@ -2511,6 +2689,60 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test_process/dim_red_some_data_test.mtx.gz@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test_process/dim_red_some_data_test.mtx.gz"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/349d2a78-03c1-44d6-8c05-a3609da1793b/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "01782fcd3ce1c81fbd1586cf4673a556565860ae"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/blob/11805eaab591c9c64918398a09cf09e0ea1069de/log/process_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/process_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/process_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/0acab229-f398-46e3-a7da-148c502c74ab/11805eaab591c9c64918398a09cf09e0ea1069de/log/process_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "11805eaab591c9c64918398a09cf09e0ea1069de"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json",
     "@type": [
@@ -2569,6 +2801,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7784ccc8-6a20-4a1d-8dc1-bad0556cc28b/generation/3bb1fbfb-617f-42bf-9c23-3f3d6d4afd24/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/6cf0a73a-d27b-418d-be25-553580932897/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3010,6 +3245,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/7784ccc8-6a20-4a1d-8dc1-bad0556cc28b/generation/6b8e9306-311c-45bd-af87-10ff5a3f46f8/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/c704b40e-dd2b-49fa-ae85-f68f57b6daa4/generation/43dffb6e-9870-4de8-8d73-0420d54a8c77/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

log/process_some_data_test.Rout

@@ -327,4 +327,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
- 18.214   5.202  22.415 
+ 21.895   3.189  22.419