From fd1fa85948b5cac9402181b48fc8e4484743f1d3 Mon Sep 17 00:00:00 2001 From: Anthony Sonrel Date: Thu, 5 Aug 2021 21:12:02 +0000 Subject: [PATCH] renku dataset update -I data/some_data_test_process/norm_counts_some_data_test.mtx.gz some_data_t... --- .renku/dataset.json | 221 +++++++++++++++++- .../metadata.yml | 60 ++--- 2 files changed, 250 insertions(+), 31 deletions(-) diff --git a/.renku/dataset.json b/.renku/dataset.json index f5ddaa3..582e62a 100644 --- a/.renku/dataset.json +++ b/.renku/dataset.json @@ -91,6 +91,9 @@ }, { "@id": "https://renkulab.io/datasets/c0868ef7-7841-4b33-9b75-3b81ebcabb21" + }, + { + "@id": "https://renkulab.io/datasets/301627c7-0211-430b-99d1-bd57b9499fb8" } ] }, @@ -473,6 +476,17 @@ } ] }, + { + "@id": "https://localhost/urls/%2F%2Frenkulab.io%2Fdatasets%2Fc0868ef7-7841-4b33-9b75-3b81ebcabb21", + "@type": [ + "http://schema.org/URL" + ], + "http://schema.org/url": [ + { + "@id": "https://renkulab.io/datasets/c0868ef7-7841-4b33-9b75-3b81ebcabb21" + } + ] + }, { "@id": "https://localhost/urls/%2F%2Frenkulab.io%2Fdatasets%2Fd18156c2-9571-42f3-86ce-d564c8a7ceaf", "@type": [ @@ -1647,6 +1661,38 @@ } ] }, + { + "@id": "https://renkulab.io/dataset-files/3cbc8840-9f2b-4d8a-b355-f966cb53567a/data/some_data_test_process/norm_counts_some_data_test.mtx.gz", + "@type": [ + "http://schema.org/DigitalDocument", + "http://www.w3.org/ns/prov#Entity" + ], + "http://schema.org/dateCreated": [ + { + "@value": "2021-08-05T21:12:01.180330+00:00" + } + ], + "http://schema.org/url": [ + { + "@value": "https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test_process/norm_counts_some_data_test.mtx.gz" + } + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#external": [ + { + "@value": false + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#source": [ + { + "@value": "data/some_data_test_process/norm_counts_some_data_test.mtx.gz" + } + ] + }, { "@id": "https://renkulab.io/dataset-files/3df4d261-ece5-4223-9e5f-cfafdb4cdd5a/data/some_data_test_process/dim_red_some_data_test.mtx.gz", "@type": [ @@ -3838,6 +3884,38 @@ } ] }, + { + "@id": "https://renkulab.io/dataset-files/e08767f9-37c7-4835-94a6-1f0996825f2c/data/some_data_test_process/hvg_some_data_test.json", + "@type": [ + "http://schema.org/DigitalDocument", + "http://www.w3.org/ns/prov#Entity" + ], + "http://schema.org/dateCreated": [ + { + "@value": "2021-08-05T21:11:52.770820+00:00" + } + ], + "http://schema.org/url": [ + { + "@value": "https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test_process/hvg_some_data_test.json" + } + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#external": [ + { + "@value": false + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#source": [ + { + "@value": "data/some_data_test_process/hvg_some_data_test.json" + } + ] + }, { "@id": "https://renkulab.io/dataset-files/e5bb8ba9-1eca-45d6-8b39-503aa4356566/data/some_data_test_process/hvg_some_data_test.json", "@type": [ @@ -3966,6 +4044,38 @@ } ] }, + { + "@id": "https://renkulab.io/dataset-files/e7fedde9-19d3-4bf8-800e-58956fca3301/data/some_data_test_process/dim_red_some_data_test.mtx.gz", + "@type": [ + "http://schema.org/DigitalDocument", + "http://www.w3.org/ns/prov#Entity" + ], + "http://schema.org/dateCreated": [ + { + "@value": "2021-08-05T21:11:44.751513+00:00" + } + ], + "http://schema.org/url": [ + { + "@value": "https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test_process/dim_red_some_data_test.mtx.gz" + } + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#external": [ + { + "@value": false + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#source": [ + { + "@value": "data/some_data_test_process/dim_red_some_data_test.mtx.gz" + } + ] + }, { "@id": "https://renkulab.io/dataset-files/e85a5ac3-a29e-4935-a74d-2e91e116cf3f/data/some_data_test_process/dim_red_some_data_test.mtx.gz", "@type": [ @@ -4062,6 +4172,38 @@ } ] }, + { + "@id": "https://renkulab.io/dataset-files/f26511ff-2894-430e-8c7b-668d89a65211/data/some_data_test/meta_some_data_test.json", + "@type": [ + "http://schema.org/DigitalDocument", + "http://www.w3.org/ns/prov#Entity" + ], + "http://schema.org/dateCreated": [ + { + "@value": "2021-06-22T08:19:23.731545+00:00" + } + ], + "http://schema.org/url": [ + { + "@value": "https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test/meta_some_data_test.json" + } + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#external": [ + { + "@value": false + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#source": [ + { + "@value": "data/some_data_test/meta_some_data_test.json" + } + ] + }, { "@id": "https://renkulab.io/dataset-files/f372969c-defc-40be-b0ba-89ad98ed4f0f/data/some_data_test_process/hvg_some_data_test.json", "@type": [ @@ -4899,6 +5041,83 @@ } ] }, + { + "@id": "https://renkulab.io/datasets/301627c7-0211-430b-99d1-bd57b9499fb8", + "@type": [ + "http://schema.org/Dataset", + "http://www.w3.org/ns/prov#Entity" + ], + "http://schema.org/alternateName": [ + { + "@value": "some_data_test_process" + } + ], + "http://schema.org/creator": [ + { + "@id": "mailto:anthony.sonrel@uzh.ch" + } + ], + "http://schema.org/dateCreated": [ + { + "@value": "2021-08-05T21:12:01.183520+00:00" + } + ], + "http://schema.org/description": [ + { + "@value": " some data test that are processed" + } + ], + "http://schema.org/hasPart": [ + { + "@id": "https://renkulab.io/dataset-files/f26511ff-2894-430e-8c7b-668d89a65211/data/some_data_test/meta_some_data_test.json" + }, + { + "@id": "https://renkulab.io/dataset-files/e7fedde9-19d3-4bf8-800e-58956fca3301/data/some_data_test_process/dim_red_some_data_test.mtx.gz" + }, + { + "@id": "https://renkulab.io/dataset-files/e08767f9-37c7-4835-94a6-1f0996825f2c/data/some_data_test_process/hvg_some_data_test.json" + }, + { + "@id": 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}, { "@id": "https://renkulab.io/datasets/3a98924c-119a-4e25-a4a9-974f65d11d24", "@type": [ @@ -6068,7 +6287,7 @@ ], "http://schema.org/isPartOf": [ { - "@id": "https://renkulab.io/projects/anthony.sonrel/process-test-sched" + "@id": "https://localhost/projects/anthony.sonrel/process-test-sched" } ], "http://schema.org/keywords": [ diff --git a/.renku/datasets/75c8088c-e8cc-4d0c-8eb5-bcc6f4826644/metadata.yml b/.renku/datasets/75c8088c-e8cc-4d0c-8eb5-bcc6f4826644/metadata.yml index 57ae129..3e01cdc 100644 --- a/.renku/datasets/75c8088c-e8cc-4d0c-8eb5-bcc6f4826644/metadata.yml +++ b/.renku/datasets/75c8088c-e8cc-4d0c-8eb5-bcc6f4826644/metadata.yml @@ -1,8 +1,8 @@ -- '@id': https://localhost/urls/%2F%2Frenkulab.io%2Fdatasets%2F051c8133-582e-414f-9cf1-476f476a3b64 +- '@id': https://localhost/urls/%2F%2Frenkulab.io%2Fdatasets%2Fc0868ef7-7841-4b33-9b75-3b81ebcabb21 '@type': - http://schema.org/URL http://schema.org/url: - - '@id': https://renkulab.io/datasets/051c8133-582e-414f-9cf1-476f476a3b64 + - '@id': https://renkulab.io/datasets/c0868ef7-7841-4b33-9b75-3b81ebcabb21 - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/meta_some_data_test.json '@type': - http://purl.org/wf4ever/wfprov#Artifact @@ -24,27 +24,6 @@ - '@value': false https://swissdatasciencecenter.github.io/renku-ontology#source: - '@value': data/some_data_test/meta_some_data_test.json -- '@id': https://renkulab.io/blob/42d09ea07527e4174aaa6e3cac7b8783d25b7474/data/some_data_test_process/norm_counts_some_data_test.mtx.gz - '@type': - - http://purl.org/wf4ever/wfprov#Artifact - - http://schema.org/DigitalDocument - - http://www.w3.org/ns/prov#Entity - http://schema.org/dateCreated: - - '@value': '2021-07-29T21:16:54.581028+00:00' - http://schema.org/isPartOf: - - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched - http://schema.org/name: - - '@value': norm_counts_some_data_test.mtx.gz - http://schema.org/url: - - '@value': https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test_process/norm_counts_some_data_test.mtx.gz - http://www.w3.org/2000/01/rdf-schema#label: - - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz@42d09ea07527e4174aaa6e3cac7b8783d25b7474 - http://www.w3.org/ns/prov#atLocation: - - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz - https://swissdatasciencecenter.github.io/renku-ontology#external: - - '@value': false - https://swissdatasciencecenter.github.io/renku-ontology#source: - - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz - '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/dim_red_some_data_test.mtx.gz '@type': - http://purl.org/wf4ever/wfprov#Artifact @@ -87,7 +66,28 @@ - '@value': false https://swissdatasciencecenter.github.io/renku-ontology#source: - '@value': data/some_data_test_process/hvg_some_data_test.json -- '@id': https://renkulab.io/datasets/c0868ef7-7841-4b33-9b75-3b81ebcabb21 +- '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/norm_counts_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://schema.org/DigitalDocument + - http://www.w3.org/ns/prov#Entity + http://schema.org/dateCreated: + - '@value': '2021-08-05T21:12:01.180330+00:00' + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://schema.org/name: + - '@value': norm_counts_some_data_test.mtx.gz + http://schema.org/url: + - '@value': https://renkulab.io/projects/anthony.sonrel/process-test-sched/files/blob/data/some_data_test_process/norm_counts_some_data_test.mtx.gz + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz + https://swissdatasciencecenter.github.io/renku-ontology#external: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#source: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz +- '@id': https://renkulab.io/datasets/301627c7-0211-430b-99d1-bd57b9499fb8 '@type': - http://purl.org/wf4ever/wfprov#Artifact - http://schema.org/Dataset @@ -97,16 +97,16 @@ http://schema.org/creator: - '@id': mailto:anthony.sonrel@uzh.ch http://schema.org/dateCreated: - - '@value': '2021-08-05T21:11:52.775822+00:00' + - '@value': '2021-08-05T21:12:01.183520+00:00' http://schema.org/description: - '@value': ' some data test that are processed' http://schema.org/hasPart: - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/meta_some_data_test.json - - '@id': https://renkulab.io/blob/42d09ea07527e4174aaa6e3cac7b8783d25b7474/data/some_data_test_process/norm_counts_some_data_test.mtx.gz - '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/dim_red_some_data_test.mtx.gz - '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/hvg_some_data_test.json + - '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/norm_counts_some_data_test.mtx.gz http://schema.org/identifier: - - '@value': c0868ef7-7841-4b33-9b75-3b81ebcabb21 + - '@value': 301627c7-0211-430b-99d1-bd57b9499fb8 http://schema.org/isPartOf: - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched http://schema.org/keywords: @@ -115,13 +115,13 @@ - '@value': ' data-test-sched-process' http://schema.org/subjectOf: [] http://schema.org/url: - - '@value': https://renkulab.io/datasets/c0868ef7-7841-4b33-9b75-3b81ebcabb21 + - '@value': 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