renku rerun --with-siblings...

renku rerun --with-siblings data/some_data_test_process/dim_red_some_data_test.mtx.gz data/some_d...

.renku/activity_index.yaml

@@ -9,6 +9,8 @@ data/some_data_test_process/dim_red_some_data_test.mtx.gz:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
   - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
+  6036a517f4c85bf9e97ccbba4ae6dc2510312afb:
+  - .renku/workflow/31b1b5f981714d99804d4efd5b27664a_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -40,6 +42,8 @@ data/some_data_test_process/hvg_some_data_test.json:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
   - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
+  6036a517f4c85bf9e97ccbba4ae6dc2510312afb:
+  - .renku/workflow/31b1b5f981714d99804d4efd5b27664a_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -71,6 +75,8 @@ data/some_data_test_process/norm_counts_some_data_test.mtx.gz:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
   - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
+  6036a517f4c85bf9e97ccbba4ae6dc2510312afb:
+  - .renku/workflow/31b1b5f981714d99804d4efd5b27664a_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:
@@ -102,6 +108,8 @@ log/process_some_data_test.Rout:
   - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml
   50755a4930833037d6f426d3d6dd6595b1a95c42:
   - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml
+  6036a517f4c85bf9e97ccbba4ae6dc2510312afb:
+  - .renku/workflow/31b1b5f981714d99804d4efd5b27664a_rerun.yaml
   85f9ab95e92e18946402e41c5153ff09321708ca:
   - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml
   933a49ac0622fcbef2294c440f27422c336342a7:

.renku/provenance.json

@@ -52,6 +52,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/a41097d0-16e8-48c1-bc54-42bdf2a33121"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717"
       }
     ]
   },
@@ -242,6 +245,181 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-26T21:17:32+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/f1461ad4-883f-410b-9974-bfcdcbf1a1bb/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/5fbe44b4-56b3-4bbd-bfe7-593441fbd5d8/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/61afafad-e8bb-428f-a862-4759fc1535fa/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-26T21:17:32+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 17
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/777a8b87-a1ab-4f13-89b2-f484edc90520/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/264e6ef16fc94591b3e52b2d9cd51969"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/d6a6761f-b1b3-41db-87ff-82996487be19/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/9038f457046345e0bec257c629651b93"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/e6ee8cc7-405f-41b2-986b-04dc2b2ee5ae/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/ff49016b79c844d49a35b35fb5973c6c"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/eb2a1af4-324f-4075-afcf-93c05535673c/a4011dcca4753a1ba23d898ee5c9da4261f95ff2/log/process_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/5fbe44b4-56b3-4bbd-bfe7-593441fbd5d8/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/b7fc3826f79d4df8958643002640ebdb"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/61afafad-e8bb-428f-a862-4759fc1535fa/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/26c301364d9f4134b0d9ea82cac86b04"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/usage/f1461ad4-883f-410b-9974-bfcdcbf1a1bb/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/29ce246a-8a33-4023-ac74-1374c7df295f",
     "@type": [
@@ -2889,6 +3067,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/a41097d0-16e8-48c1-bc54-42bdf2a33121/generation/06f69ca3-ae5f-42d9-a3b5-40f1279313fb/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/777a8b87-a1ab-4f13-89b2-f484edc90520/01782fcd3ce1c81fbd1586cf4673a556565860ae/data/some_data_test_process/dim_red_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2988,6 +3169,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/a41097d0-16e8-48c1-bc54-42bdf2a33121/generation/3b014196-0a36-447c-84c1-2faafb97e601/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/d6a6761f-b1b3-41db-87ff-82996487be19/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3229,6 +3413,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/a4011dcca4753a1ba23d898ee5c9da4261f95ff2/log/process_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/process_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/process_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/eb2a1af4-324f-4075-afcf-93c05535673c/a4011dcca4753a1ba23d898ee5c9da4261f95ff2/log/process_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "a4011dcca4753a1ba23d898ee5c9da4261f95ff2"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/ad64acc0205e5341e075a208e4bbebfb39d4e05f/log/process_some_data_test.Rout",
     "@type": [
@@ -3462,6 +3673,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/a41097d0-16e8-48c1-bc54-42bdf2a33121/generation/0072df72-3548-4580-86a3-95404f45c522/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/25eae514-36c0-42b4-80cb-ea58aff39717/generation/e6ee8cc7-405f-41b2-986b-04dc2b2ee5ae/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [