From c41a643785f7c8ee0ec048c590717ec1acef1e03 Mon Sep 17 00:00:00 2001 From: Anthony Sonrel Date: Thu, 5 Aug 2021 21:11:24 +0000 Subject: [PATCH] renku rerun --with-siblings data/some_data_test_process/dim_red_some_data_test.mtx.gz data/some_d... --- .renku/activity_index.yaml | 8 + .renku/provenance.json | 214 +++++++++ ...488430528914e899bff9231f3616c35_rerun.yaml | 443 ++++++++++++++++++ 3 files changed, 665 insertions(+) create mode 100644 .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml diff --git a/.renku/activity_index.yaml b/.renku/activity_index.yaml index ac6bf16..8c8e621 100644 --- a/.renku/activity_index.yaml +++ b/.renku/activity_index.yaml @@ -5,6 +5,8 @@ data/some_data_test_process/dim_red_some_data_test.mtx.gz: - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml 42d09ea07527e4174aaa6e3cac7b8783d25b7474: - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml + 50755a4930833037d6f426d3d6dd6595b1a95c42: + - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml 85f9ab95e92e18946402e41c5153ff09321708ca: - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml 933a49ac0622fcbef2294c440f27422c336342a7: @@ -30,6 +32,8 @@ data/some_data_test_process/hvg_some_data_test.json: - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml 42d09ea07527e4174aaa6e3cac7b8783d25b7474: - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml + 50755a4930833037d6f426d3d6dd6595b1a95c42: + - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml 85f9ab95e92e18946402e41c5153ff09321708ca: - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml 933a49ac0622fcbef2294c440f27422c336342a7: @@ -55,6 +59,8 @@ data/some_data_test_process/norm_counts_some_data_test.mtx.gz: - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml 42d09ea07527e4174aaa6e3cac7b8783d25b7474: - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml + 50755a4930833037d6f426d3d6dd6595b1a95c42: + - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml 85f9ab95e92e18946402e41c5153ff09321708ca: - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml 933a49ac0622fcbef2294c440f27422c336342a7: @@ -80,6 +86,8 @@ log/process_some_data_test.Rout: - .renku/workflow/a4415f9a81854805804192db24fe3400_rerun.yaml 42d09ea07527e4174aaa6e3cac7b8783d25b7474: - .renku/workflow/3d5a5b9b639b45809d5bde769d6c034e_rerun.yaml + 50755a4930833037d6f426d3d6dd6595b1a95c42: + - .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml 85f9ab95e92e18946402e41c5153ff09321708ca: - .renku/workflow/0e7334e8d676451facb5970dc74da62e_rerun.yaml 933a49ac0622fcbef2294c440f27422c336342a7: diff --git a/.renku/provenance.json b/.renku/provenance.json index 0e3d0c2..82d85d4 100644 --- a/.renku/provenance.json +++ b/.renku/provenance.json @@ -43,6 +43,9 @@ }, { "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959" } ] }, @@ -1283,6 +1286,181 @@ } ] }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959", + "@type": [ + "http://www.w3.org/ns/prov#Activity" + ], + "http://www.w3.org/ns/prov#endedAtTime": [ + { + "@type": "http://www.w3.org/2001/XMLSchema#dateTime", + "@value": "2021-08-05T21:11:23+00:00" + } + ], + "http://www.w3.org/ns/prov#qualifiedAssociation": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/association" + } + ], + "http://www.w3.org/ns/prov#qualifiedUsage": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/af2edef1-3647-4a7e-b1b6-114068d8fc16/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/ab1c007a-3b9d-477e-bd14-2fa4b68466e3/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/7e8ee95c-9568-4869-9b68-b1ef2396e0de/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json" + } + ], + "http://www.w3.org/ns/prov#startedAtTime": [ + { + "@type": "http://www.w3.org/2001/XMLSchema#dateTime", + "@value": "2021-08-05T21:11:23+00:00" + } + ], + "http://www.w3.org/ns/prov#wasAssociatedWith": [ + { + "@id": "mailto:anthony.sonrel@uzh.ch" + }, + { + "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#order": [ + { + "@value": 14 + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/association", + "@type": [ + "http://www.w3.org/ns/prov#Association" + ], + "http://www.w3.org/ns/prov#agent": [ + { + "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1" + } + ], + "http://www.w3.org/ns/prov#hadPlan": [ + { + "@id": "https://renkulab.io/plans/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/1acdceb8-a475-4221-96d9-d29575e4fed6/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json", + "@type": [ + "http://www.w3.org/ns/prov#Generation" + ], + "http://www.w3.org/ns/prov#activity": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "outputs/9038f457046345e0bec257c629651b93" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/5f02524f-bdee-4488-bfd6-91cfac2d069a/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz", + "@type": [ + "http://www.w3.org/ns/prov#Generation" + ], + "http://www.w3.org/ns/prov#activity": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "outputs/264e6ef16fc94591b3e52b2d9cd51969" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/88d1f406-91dc-4e95-ae53-9d85290c9c65/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout", + "@type": [ + "http://www.w3.org/ns/prov#Generation" + ], + "http://www.w3.org/ns/prov#activity": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "outputs/5" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/b6e13a21-cc00-40fa-b813-372f4f025794/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz", + "@type": [ + "http://www.w3.org/ns/prov#Generation" + ], + "http://www.w3.org/ns/prov#activity": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "outputs/ff49016b79c844d49a35b35fb5973c6c" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/7e8ee95c-9568-4869-9b68-b1ef2396e0de/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json", + "@type": [ + "http://www.w3.org/ns/prov#Usage" + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "inputs/26c301364d9f4134b0d9ea82cac86b04" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/ab1c007a-3b9d-477e-bd14-2fa4b68466e3/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz", + "@type": [ + "http://www.w3.org/ns/prov#Usage" + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "inputs/b7fc3826f79d4df8958643002640ebdb" + } + ] + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/usage/af2edef1-3647-4a7e-b1b6-114068d8fc16/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R", + "@type": [ + "http://www.w3.org/ns/prov#Usage" + ], + "http://www.w3.org/ns/prov#entity": [ + { + "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R" + } + ], + "http://www.w3.org/ns/prov#hadRole": [ + { + "@value": "inputs/4" + } + ] + }, { "@id": "https://renkulab.io/activities/6552d148-80fa-41de-ac67-5e45b6164515", "@type": [ @@ -2388,6 +2566,9 @@ }, { "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/46056283-c0e5-424a-b267-64d4666bf1d7/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/1acdceb8-a475-4221-96d9-d29575e4fed6/17a873a72b87d846682e57076ad588bc295434e2/data/some_data_test_process/hvg_some_data_test.json" } ], "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [ @@ -2684,6 +2865,9 @@ }, { "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/51ffa625-a08e-4d19-b92d-55f5ab70f613/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/5f02524f-bdee-4488-bfd6-91cfac2d069a/c1ea57083636e9d06405de8a670cddb02fa47972/data/some_data_test_process/dim_red_some_data_test.mtx.gz" } ], "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [ @@ -2719,6 +2903,33 @@ } ] }, + { + "@id": "https://renkulab.io/blob/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout", + "@type": [ + "http://purl.org/wf4ever/wfprov#Artifact", + "http://www.w3.org/ns/prov#Entity" + ], + "http://www.w3.org/2000/01/rdf-schema#label": [ + { + "@value": "log/process_some_data_test.Rout@UNCOMMITTED" + } + ], + "http://www.w3.org/ns/prov#atLocation": [ + { + "@value": "log/process_some_data_test.Rout" + } + ], + "http://www.w3.org/ns/prov#qualifiedGeneration": [ + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/88d1f406-91dc-4e95-ae53-9d85290c9c65/c758d6e75320b5bc32f1bd5c4c1206f929354b50/log/process_some_data_test.Rout" + } + ], + "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [ + { + "@value": "c758d6e75320b5bc32f1bd5c4c1206f929354b50" + } + ] + }, { "@id": "https://renkulab.io/blob/c8ec2a53b0c141a2d6a9cc7abb8b5b197add3bf3/src/process_data.R", "@type": [ @@ -2796,6 +3007,9 @@ }, { "@id": "https://renkulab.io/activities/7690d626-fe6a-430c-82ab-d36dc3195bab/generation/59632e3b-6a81-4b6e-9a1c-9bea7835b807/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz" + }, + { + "@id": "https://renkulab.io/activities/4a64aa0f-3fb3-4db5-a748-74cc02a83959/generation/b6e13a21-cc00-40fa-b813-372f4f025794/d4d806fde491b8599fa0b595b50ca74b11644707/data/some_data_test_process/norm_counts_some_data_test.mtx.gz" } ], "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [ diff --git a/.renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml b/.renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml new file mode 100644 index 0000000..5640404 --- /dev/null +++ b/.renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml @@ -0,0 +1,443 @@ +- '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + '@type': + - http://purl.org/wf4ever/wfprov#WorkflowEngine + - http://www.w3.org/ns/prov#SoftwareAgent + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': renku 0.15.1 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42 + '@type': + - http://purl.org/wf4ever/wfprov#ProcessRun + - http://www.w3.org/ns/prov#Activity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#comment: + - '@value': 'renku rerun: committing 4 newly added files' + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/5488430528914e899bff9231f3616c35_rerun.yaml + http://www.w3.org/ns/prov#endedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2021-08-05T21:11:23+00:00' + http://www.w3.org/ns/prov#influenced: [] + http://www.w3.org/ns/prov#qualifiedAssociation: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/association + http://www.w3.org/ns/prov#qualifiedUsage: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/4 + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/b7fc3826f79d4df8958643002640ebdb + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/26c301364d9f4134b0d9ea82cac86b04 + http://www.w3.org/ns/prov#startedAtTime: + - '@type': http://www.w3.org/2001/XMLSchema#dateTime + '@value': '2021-08-05T21:11:23+00:00' + http://www.w3.org/ns/prov#wasAssociatedWith: + - '@id': mailto:anthony.sonrel@uzh.ch + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#wasInformedBy: + - '@id': https://localhost/activities/commit/e9dd3701c7bf3a50b862578136db03fe4b89cdae + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameter: [] +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/association + '@type': + - http://www.w3.org/ns/prov#Association + http://www.w3.org/ns/prov#agent: + - '@id': https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1 + http://www.w3.org/ns/prov#hadPlan: + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/26c301364d9f4134b0d9ea82cac86b04 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/meta_some_data_test.json + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/26c301364d9f4134b0d9ea82cac86b04 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/4 + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/6c0e379b050805da34c683c0f3e16c5912188903/src/process_data.R + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/4 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/inputs/b7fc3826f79d4df8958643002640ebdb + '@type': + - http://www.w3.org/ns/prov#Usage + http://www.w3.org/ns/prov#entity: + - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/counts_some_data_test.mtx.gz + http://www.w3.org/ns/prov#hadRole: + - '@value': inputs/b7fc3826f79d4df8958643002640ebdb +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/264e6ef16fc94591b3e52b2d9cd51969 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/264e6ef16fc94591b3e52b2d9cd51969 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/5 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/5 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/9038f457046345e0bec257c629651b93 + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/9038f457046345e0bec257c629651b93 +- '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/ff49016b79c844d49a35b35fb5973c6c + '@type': + - http://www.w3.org/ns/prov#Generation + http://www.w3.org/ns/prov#activity: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#hadRole: + - '@value': outputs/ff49016b79c844d49a35b35fb5973c6c +- '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/counts_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test/counts_some_data_test.mtx.gz@25520e4a7e92f60ffe1b645f44579c97a06dc1ee + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test/counts_some_data_test.mtx.gz +- '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/meta_some_data_test.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test/meta_some_data_test.json@25520e4a7e92f60ffe1b645f44579c97a06dc1ee + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test/meta_some_data_test.json +- '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/dim_red_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/dim_red_some_data_test.mtx.gz@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/dim_red_some_data_test.mtx.gz + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/264e6ef16fc94591b3e52b2d9cd51969 +- '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/hvg_some_data_test.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/hvg_some_data_test.json@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/hvg_some_data_test.json + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/9038f457046345e0bec257c629651b93 +- '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/data/some_data_test_process/norm_counts_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/ff49016b79c844d49a35b35fb5973c6c +- '@id': https://renkulab.io/blob/50755a4930833037d6f426d3d6dd6595b1a95c42/log/process_some_data_test.Rout + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': log/process_some_data_test.Rout@50755a4930833037d6f426d3d6dd6595b1a95c42 + http://www.w3.org/ns/prov#atLocation: + - '@value': log/process_some_data_test.Rout + http://www.w3.org/ns/prov#qualifiedGeneration: + - '@id': https://localhost/activities/commit/50755a4930833037d6f426d3d6dd6595b1a95c42/outputs/5 +- '@id': https://renkulab.io/blob/6c0e379b050805da34c683c0f3e16c5912188903/src/process_data.R + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': src/process_data.R@6c0e379b050805da34c683c0f3e16c5912188903 + http://www.w3.org/ns/prov#atLocation: + - '@value': src/process_data.R +- '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/dim_red_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/dim_red_some_data_test.mtx.gz@c9339935808c79deb11d9c2599a58dd66b640281 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/dim_red_some_data_test.mtx.gz +- '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/hvg_some_data_test.json + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/hvg_some_data_test.json@c9339935808c79deb11d9c2599a58dd66b640281 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/hvg_some_data_test.json +- '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/norm_counts_some_data_test.mtx.gz + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz@c9339935808c79deb11d9c2599a58dd66b640281 + http://www.w3.org/ns/prov#atLocation: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz +- '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/log/process_some_data_test.Rout + '@type': + - http://purl.org/wf4ever/wfprov#Artifact + - http://www.w3.org/ns/prov#Entity + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': log/process_some_data_test.Rout@c9339935808c79deb11d9c2599a58dd66b640281 + http://www.w3.org/ns/prov#atLocation: + - '@value': log/process_some_data_test.Rout +- '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + '@type': + - http://schema.org/Project + - http://www.w3.org/ns/prov#Location + http://schema.org/agent: + - '@value': 0.15.1 + http://schema.org/creator: + - '@id': mailto:anthony.sonrel@uzh.ch + http://schema.org/dateCreated: + - '@value': '2021-06-22T07:10:34.553953+00:00' + http://schema.org/name: + - '@value': process-test-sched + http://schema.org/schemaVersion: + - '@value': '8' + https://swissdatasciencecenter.github.io/renku-ontology#automatedTemplateUpdate: + - '@value': false + https://swissdatasciencecenter.github.io/renku-ontology#immutableTemplateFiles: [] + https://swissdatasciencecenter.github.io/renku-ontology#templateId: + - '@value': omnibench-processing + https://swissdatasciencecenter.github.io/renku-ontology#templateMetadata: + - '@value': '{"__template_source__": "https://github.com/ansonrel/contributed-project-templates", + "__template_ref__": "main", "__template_id__": "omnibench-processing", "__namespace__": + "anthony.sonrel", "__automated_update__": true, "__repository__": "https://renkulab.io/gitlab", + "__sanitized_project_name__": "process-test-sched", "__project_slug__": "anthony.sonrel/process-test-sched", + "description": "A test processing that will be controlled by a scheduler. ", + "name": "process-test-sched"}' + https://swissdatasciencecenter.github.io/renku-ontology#templateReference: + - '@value': main + https://swissdatasciencecenter.github.io/renku-ontology#templateSource: + - '@value': https://github.com/ansonrel/contributed-project-templates + https://swissdatasciencecenter.github.io/renku-ontology#templateVersion: + - '@value': 055fe9f043978f31fc2d7266e20e6829e5e1badd +- '@id': https://renkulab.io/runs/0e31a429-5684-438d-a880-ada5137ce17f/arguments/1 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': --no-restore + http://schema.org/name: + - '@value': param-1 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Argument "--no-restore" + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 1 + https://swissdatasciencecenter.github.io/renku-ontology#value: + - '@value': --no-restore +- '@id': https://renkulab.io/runs/5d23d88c-3a11-4c5f-9103-0a75b245e6a5/arguments/2 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': --no-save + http://schema.org/name: + - '@value': param-2 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Argument "--no-save" + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 2 + https://swissdatasciencecenter.github.io/renku-ontology#value: + - '@value': --no-save +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b + '@type': + - http://www.w3.org/ns/prov#Entity + - http://www.w3.org/ns/prov#Plan + - https://swissdatasciencecenter.github.io/renku-ontology#Run + http://schema.org/isPartOf: + - '@id': https://renkulab.io/projects/anthony.sonrel/process-test-sched + http://schema.org/keywords: [] + http://schema.org/name: + - '@value': some_data_test + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml@c9339935808c79deb11d9c2599a58dd66b640281 + http://www.w3.org/ns/prov#atLocation: + - '@value': .renku/workflow/cd845df889be4658a1c00b31f6f78d5f_R_CMD_BATCH.yaml + https://swissdatasciencecenter.github.io/renku-ontology#command: + - '@value': R CMD BATCH + https://swissdatasciencecenter.github.io/renku-ontology#hasArguments: + - '@id': https://renkulab.io/runs/0e31a429-5684-438d-a880-ada5137ce17f/arguments/1 + - '@id': https://renkulab.io/runs/5d23d88c-3a11-4c5f-9103-0a75b245e6a5/arguments/2 + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/arguments/3 + https://swissdatasciencecenter.github.io/renku-ontology#hasInputs: + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/4 + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/b7fc3826f79d4df8958643002640ebdb + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/26c301364d9f4134b0d9ea82cac86b04 + https://swissdatasciencecenter.github.io/renku-ontology#hasOutputs: + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/5 + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/264e6ef16fc94591b3e52b2d9cd51969 + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/ff49016b79c844d49a35b35fb5973c6c + - '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/9038f457046345e0bec257c629651b93 + https://swissdatasciencecenter.github.io/renku-ontology#hasRunParameters: [] + https://swissdatasciencecenter.github.io/renku-ontology#hasSubprocess: [] + https://swissdatasciencecenter.github.io/renku-ontology#successCodes: [] +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/arguments/3 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandArgument + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': '"data/some_data_test_process" + + dataset_name="some_data_test" + + meta_file="data/some_data_test/meta_some_data_test.json" + + count_file="data/some_data_test/counts_some_data_test.mtx.gz"' + http://schema.org/name: + - '@value': args_out_path-3 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': 'Command Argument ""data/some_data_test_process" + + dataset_name="some_data_test" + + meta_file="data/some_data_test/meta_some_data_test.json" + + count_file="data/some_data_test/counts_some_data_test.mtx.gz""' + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 3 + https://swissdatasciencecenter.github.io/renku-ontology#prefix: + - '@value': --args out_path= + https://swissdatasciencecenter.github.io/renku-ontology#value: + - '@value': '"data/some_data_test_process" + + dataset_name="some_data_test" + + meta_file="data/some_data_test/meta_some_data_test.json" + + count_file="data/some_data_test/counts_some_data_test.mtx.gz"' +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/26c301364d9f4134b0d9ea82cac86b04 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/some_data_test/meta_some_data_test.json + http://schema.org/name: + - '@value': input-837d + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "data/some_data_test/meta_some_data_test.json" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/meta_some_data_test.json +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/4 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': src/process_data.R + http://schema.org/name: + - '@value': input-4 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "src/process_data.R" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/6c0e379b050805da34c683c0f3e16c5912188903/src/process_data.R + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 4 +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/inputs/b7fc3826f79d4df8958643002640ebdb + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandInput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/some_data_test/counts_some_data_test.mtx.gz + http://schema.org/name: + - '@value': input-1714 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Input "data/some_data_test/counts_some_data_test.mtx.gz" + https://swissdatasciencecenter.github.io/renku-ontology#consumes: + - '@id': https://renkulab.io/blob/25520e4a7e92f60ffe1b645f44579c97a06dc1ee/data/some_data_test/counts_some_data_test.mtx.gz +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/264e6ef16fc94591b3e52b2d9cd51969 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/some_data_test_process/dim_red_some_data_test.mtx.gz + http://schema.org/name: + - '@value': output-3d46 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "data/some_data_test_process/dim_red_some_data_test.mtx.gz" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/dim_red_some_data_test.mtx.gz +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/5 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': log/process_some_data_test.Rout + http://schema.org/name: + - '@value': output-5 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "log/process_some_data_test.Rout" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#position: + - '@value': 5 + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/log/process_some_data_test.Rout +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/9038f457046345e0bec257c629651b93 + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/some_data_test_process/hvg_some_data_test.json + http://schema.org/name: + - '@value': output-3085 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "data/some_data_test_process/hvg_some_data_test.json" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/hvg_some_data_test.json +- '@id': https://renkulab.io/runs/9fbf9a9e-eac0-4d98-8be7-9768b5ce0f6b/outputs/ff49016b79c844d49a35b35fb5973c6c + '@type': + - https://swissdatasciencecenter.github.io/renku-ontology#CommandOutput + - https://swissdatasciencecenter.github.io/renku-ontology#CommandParameter + http://schema.org/defaultValue: + - '@value': data/some_data_test_process/norm_counts_some_data_test.mtx.gz + http://schema.org/name: + - '@value': output-9136 + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Command Output "data/some_data_test_process/norm_counts_some_data_test.mtx.gz" + https://swissdatasciencecenter.github.io/renku-ontology#createFolder: + - '@value': true + https://swissdatasciencecenter.github.io/renku-ontology#produces: + - '@id': https://renkulab.io/blob/c9339935808c79deb11d9c2599a58dd66b640281/data/some_data_test_process/norm_counts_some_data_test.mtx.gz +- '@id': mailto:anthony.sonrel@uzh.ch + '@type': + - http://schema.org/Person + - http://www.w3.org/ns/prov#Person + http://schema.org/email: + - '@value': anthony.sonrel@uzh.ch + http://schema.org/name: + - '@value': Anthony Sonrel + http://www.w3.org/2000/01/rdf-schema#label: + - '@value': Anthony Sonrel -- GitLab