.renku/activity_index.yaml

@@ -25,6 +25,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e8bb00791f9037cfab4cce5ddc54883b2fe73322:
+  - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
   - .renku/workflow/2b42eba3a70f405fa4b2988a661293f9_rerun.yaml
   f53c9b5b94256f18ed1f48b1ae86f000675ba2a7:
@@ -58,6 +60,8 @@ data/some_data_test/data_info_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e8bb00791f9037cfab4cce5ddc54883b2fe73322:
+  - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
   - .renku/workflow/2b42eba3a70f405fa4b2988a661293f9_rerun.yaml
   f53c9b5b94256f18ed1f48b1ae86f000675ba2a7:
@@ -91,6 +95,8 @@ data/some_data_test/feature_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e8bb00791f9037cfab4cce5ddc54883b2fe73322:
+  - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
   - .renku/workflow/2b42eba3a70f405fa4b2988a661293f9_rerun.yaml
   f53c9b5b94256f18ed1f48b1ae86f000675ba2a7:
@@ -124,6 +130,8 @@ data/some_data_test/meta_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e8bb00791f9037cfab4cce5ddc54883b2fe73322:
+  - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
   - .renku/workflow/2b42eba3a70f405fa4b2988a661293f9_rerun.yaml
   f53c9b5b94256f18ed1f48b1ae86f000675ba2a7:
@@ -157,6 +165,8 @@ log/generate_some_data_test.Rout:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e8bb00791f9037cfab4cce5ddc54883b2fe73322:
+  - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
   - .renku/workflow/2b42eba3a70f405fa4b2988a661293f9_rerun.yaml
   f53c9b5b94256f18ed1f48b1ae86f000675ba2a7:

.renku/provenance.json

@@ -52,6 +52,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/5184dc48-9cf8-43ff-ad52-c0271c860383"
+      },
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
       }
     ]
   },
@@ -755,6 +758,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-26T21:13:25+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/usage/dfff28f6-efe1-4c51-a034-d7d29c0900d1/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/usage/c602e59e-d9eb-48dd-b6b6-a12888f2a8b3/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-26T21:13:25+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 17
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/0690b60b-ac39-4b95-bbbd-0fcc782fdce1/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/639d915f-e251-4e39-865f-09d87357cdfc/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/86c19f88-0935-4faf-b855-1e91c4fd34f9/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/cc1cdd2d-a57b-4961-8153-b47fec716abc/ff38e886f03272d899d4327be0e41e03ae450d86/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/f03455bd-e88a-42dc-9ef8-c587409e5b30/30d1977d9a98faedb7477cbc1b4ec86526f75c1e/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/usage/c602e59e-d9eb-48dd-b6b6-a12888f2a8b3/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/usage/dfff28f6-efe1-4c51-a034-d7d29c0900d1/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/1bf22260-a688-44f8-9953-26b5218e0c3e",
     "@type": [
@@ -3180,6 +3355,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/5184dc48-9cf8-43ff-ad52-c0271c860383/generation/b080e3db-c3d0-40e2-96bb-fa8d2ccc2f1f/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/86c19f88-0935-4faf-b855-1e91c4fd34f9/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3215,6 +3393,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/30d1977d9a98faedb7477cbc1b4ec86526f75c1e/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/f03455bd-e88a-42dc-9ef8-c587409e5b30/30d1977d9a98faedb7477cbc1b4ec86526f75c1e/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "30d1977d9a98faedb7477cbc1b4ec86526f75c1e"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/3abdfb6cf1080eaf9b68e823a920627e57df3fad/data/some_data_test/data_info_some_data_test.json",
     "@type": [
@@ -3387,6 +3592,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/5184dc48-9cf8-43ff-ad52-c0271c860383/generation/1a89834b-bfc7-4491-9f6a-00cab1f21943/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/639d915f-e251-4e39-865f-09d87357cdfc/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3827,6 +4035,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/5184dc48-9cf8-43ff-ad52-c0271c860383/generation/8485de55-0c25-4559-a321-4262a2687c25/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/0690b60b-ac39-4b95-bbbd-0fcc782fdce1/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3943,6 +4154,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/ff38e886f03272d899d4327be0e41e03ae450d86/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/1afa8e11-c9bf-412f-86f6-355679048aff/generation/cc1cdd2d-a57b-4961-8153-b47fec716abc/ff38e886f03272d899d4327be0e41e03ae450d86/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "ff38e886f03272d899d4327be0e41e03ae450d86"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3",
     "@type": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-19 23:08:12"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-26 23:13:14"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
- 10.257   1.167  13.571 
+  9.861   1.175  10.867