.renku/activity_index.yaml

 data/some_data_test/counts_some_data_test.mtx.gz:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  393161988bd77cab5e0656542adb55cc9a48efed:
+  - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
   - .renku/workflow/498d69d3818d47e39ee0e538a5b22629_R_CMD_BATCH.yaml
   5526075810f70b0cafa43a3dfdad0d13218163d4:
@@ -20,6 +22,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
 data/some_data_test/data_info_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  393161988bd77cab5e0656542adb55cc9a48efed:
+  - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
   - .renku/workflow/498d69d3818d47e39ee0e538a5b22629_R_CMD_BATCH.yaml
   5526075810f70b0cafa43a3dfdad0d13218163d4:
@@ -39,6 +43,8 @@ data/some_data_test/data_info_some_data_test.json:
 data/some_data_test/feature_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  393161988bd77cab5e0656542adb55cc9a48efed:
+  - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
   - .renku/workflow/498d69d3818d47e39ee0e538a5b22629_R_CMD_BATCH.yaml
   5526075810f70b0cafa43a3dfdad0d13218163d4:
@@ -58,6 +64,8 @@ data/some_data_test/feature_some_data_test.json:
 data/some_data_test/meta_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  393161988bd77cab5e0656542adb55cc9a48efed:
+  - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
   - .renku/workflow/498d69d3818d47e39ee0e538a5b22629_R_CMD_BATCH.yaml
   5526075810f70b0cafa43a3dfdad0d13218163d4:
@@ -77,6 +85,8 @@ data/some_data_test/meta_some_data_test.json:
 log/generate_some_data_test.Rout:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  393161988bd77cab5e0656542adb55cc9a48efed:
+  - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
   - .renku/workflow/498d69d3818d47e39ee0e538a5b22629_R_CMD_BATCH.yaml
   5526075810f70b0cafa43a3dfdad0d13218163d4:

.renku/provenance.json

@@ -31,6 +31,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/2cce249d-45f5-4200-9018-b0e6c21cc204"
+      },
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
       }
     ]
   },
@@ -1594,6 +1597,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-08T21:05:17+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/usage/c26f81b5-75bc-4877-bd76-426242104d62/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/usage/1885166e-59c4-4614-9da7-0159ec54d0bf/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-08T21:05:17+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 10
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/5b48ec43-31f9-4f85-8ff0-e7febb9ff8de/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/854192c5-318f-48ff-bbc4-a3913d3e762f/516808c6afbbcf75c0944ce6c03ae8a8f2a28f85/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/d99cc0f7-d803-4f2d-95ae-673db3860c53/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/e5044784-c37b-4776-b134-7f7a73684dfc/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/eea6c244-16a7-4df0-9b50-d4edce45cbb7/2ad0583c41a1f05e8c6acfda5714b204af83aaca/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/usage/1885166e-59c4-4614-9da7-0159ec54d0bf/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/usage/c26f81b5-75bc-4877-bd76-426242104d62/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/0af7f251561adf8d556bb9c7986c4bcdcba25ce9/log/generate_some_data_test.Rout",
     "@type": [
@@ -1729,6 +1904,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/2ad0583c41a1f05e8c6acfda5714b204af83aaca/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/eea6c244-16a7-4df0-9b50-d4edce45cbb7/2ad0583c41a1f05e8c6acfda5714b204af83aaca/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "2ad0583c41a1f05e8c6acfda5714b204af83aaca"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/2b27712376f60cc3b469d3189a206982537b55c1/log/generate_some_data_test.Rout",
     "@type": [
@@ -1799,6 +2001,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/2cce249d-45f5-4200-9018-b0e6c21cc204/generation/9ca516bd-c1c7-4dca-ab27-8cd0d2e049f0/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/e5044784-c37b-4776-b134-7f7a73684dfc/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -1888,6 +2093,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/516808c6afbbcf75c0944ce6c03ae8a8f2a28f85/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/854192c5-318f-48ff-bbc4-a3913d3e762f/516808c6afbbcf75c0944ce6c03ae8a8f2a28f85/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "516808c6afbbcf75c0944ce6c03ae8a8f2a28f85"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
     "@type": [
@@ -1931,6 +2163,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/2cce249d-45f5-4200-9018-b0e6c21cc204/generation/66d0b4d3-7c24-426a-8790-b5a7b7db5d4a/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/5b48ec43-31f9-4f85-8ff0-e7febb9ff8de/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2215,6 +2450,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/2cce249d-45f5-4200-9018-b0e6c21cc204/generation/cf4119db-620c-4758-878d-864267d390f9/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/f1de0a9a-d638-442d-8fb4-8a3586e6b1c4/generation/d99cc0f7-d803-4f2d-95ae-673db3860c53/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-01 23:12:49"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-08 23:05:07"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-  8.451   2.158  11.289 
+   8.38    2.49   10.94