.renku/activity_index.yaml

@@ -25,6 +25,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e6f49d025aa32dbcb727f128e85e1d46542d2b52:
+  - .renku/workflow/00860333b70a4ad1aeefd4cada5ce9c4_rerun.yaml
   e8bb00791f9037cfab4cce5ddc54883b2fe73322:
   - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
@@ -60,6 +62,8 @@ data/some_data_test/data_info_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e6f49d025aa32dbcb727f128e85e1d46542d2b52:
+  - .renku/workflow/00860333b70a4ad1aeefd4cada5ce9c4_rerun.yaml
   e8bb00791f9037cfab4cce5ddc54883b2fe73322:
   - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
@@ -95,6 +99,8 @@ data/some_data_test/feature_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e6f49d025aa32dbcb727f128e85e1d46542d2b52:
+  - .renku/workflow/00860333b70a4ad1aeefd4cada5ce9c4_rerun.yaml
   e8bb00791f9037cfab4cce5ddc54883b2fe73322:
   - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
@@ -130,6 +136,8 @@ data/some_data_test/meta_some_data_test.json:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e6f49d025aa32dbcb727f128e85e1d46542d2b52:
+  - .renku/workflow/00860333b70a4ad1aeefd4cada5ce9c4_rerun.yaml
   e8bb00791f9037cfab4cce5ddc54883b2fe73322:
   - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:
@@ -165,6 +173,8 @@ log/generate_some_data_test.Rout:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
   - .renku/workflow/12c59e44c2bc44e795249a4fdce71aba_rerun.yaml
+  e6f49d025aa32dbcb727f128e85e1d46542d2b52:
+  - .renku/workflow/00860333b70a4ad1aeefd4cada5ce9c4_rerun.yaml
   e8bb00791f9037cfab4cce5ddc54883b2fe73322:
   - .renku/workflow/d90e69bb7db64d64a243b85145cff5cb_rerun.yaml
   eb9eb22997a8986a1554d2b36306e237f32452b0:

.renku/provenance.json

@@ -55,6 +55,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c11beb59-d73f-41c0-a558-7443758ce513"
+      },
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
       }
     ]
   },
@@ -1790,6 +1793,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-09-02T21:17:27+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/usage/b493d145-7649-46fc-b016-070a2c77088d/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/usage/b05d33e3-afd5-401c-9a0f-1096f3786d9b/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-09-02T21:17:27+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 18
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/1b95b7dc-12ae-4a94-b3c3-7978098e2d88/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/6cdc3a5c-d8cb-445d-a4c5-d4095e3fbac1/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/9cae1076-6f2e-4301-bd3c-6f0ea16a5793/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/bc1fed79-55e7-43a6-a9a9-56573c55fe35/026ace58302b3379ba9ddf22ef14ed144eb80462/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/df7278f1-d33c-494f-9c40-52b288a505eb/b012e4841cc22f90ab5f5faf5ad8a54e3d6104a8/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/usage/b05d33e3-afd5-401c-9a0f-1096f3786d9b/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/usage/b493d145-7649-46fc-b016-070a2c77088d/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/abf3d8bd-9a86-4265-8a7b-11b729f5f99f",
     "@type": [
@@ -2994,6 +3169,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/026ace58302b3379ba9ddf22ef14ed144eb80462/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/bc1fed79-55e7-43a6-a9a9-56573c55fe35/026ace58302b3379ba9ddf22ef14ed144eb80462/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "026ace58302b3379ba9ddf22ef14ed144eb80462"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/0af7f251561adf8d556bb9c7986c4bcdcba25ce9/log/generate_some_data_test.Rout",
     "@type": [
@@ -3358,6 +3560,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c11beb59-d73f-41c0-a558-7443758ce513/generation/5789539d-6e08-4f64-800c-dc41896ef99d/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/1b95b7dc-12ae-4a94-b3c3-7978098e2d88/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3595,6 +3800,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c11beb59-d73f-41c0-a558-7443758ce513/generation/4082a414-b47c-40ba-a988-49eebd737899/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/6cdc3a5c-d8cb-445d-a4c5-d4095e3fbac1/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3814,6 +4022,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/b012e4841cc22f90ab5f5faf5ad8a54e3d6104a8/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/df7278f1-d33c-494f-9c40-52b288a505eb/b012e4841cc22f90ab5f5faf5ad8a54e3d6104a8/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "b012e4841cc22f90ab5f5faf5ad8a54e3d6104a8"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/b43422617bde14b721566d28d494c153506bc799/log/generate_some_data_test.Rout",
     "@type": [
@@ -4038,6 +4273,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c11beb59-d73f-41c0-a558-7443758ce513/generation/321c533f-0fb4-493c-9cd1-4dc3706e1f1d/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/abab6c7a-e60a-422f-b013-accc164695e2/generation/9cae1076-6f2e-4301-bd3c-6f0ea16a5793/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-26 23:13:14"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-09-02 23:17:17"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-  9.861   1.175  10.867 
+  9.015   1.358  11.409