.renku/activity_index.yaml

 data/some_data_test/counts_some_data_test.mtx.gz:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
+  - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -26,6 +28,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
 data/some_data_test/data_info_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
+  - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -51,6 +55,8 @@ data/some_data_test/data_info_some_data_test.json:
 data/some_data_test/feature_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
+  - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -76,6 +82,8 @@ data/some_data_test/feature_some_data_test.json:
 data/some_data_test/meta_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
+  - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -101,6 +109,8 @@ data/some_data_test/meta_some_data_test.json:
 log/generate_some_data_test.Rout:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
+  - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:

.renku/provenance.json

@@ -40,6 +40,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/86acd209-edf9-4309-a5cf-f6988be74cf6"
+      },
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
       }
     ]
   },
@@ -1603,6 +1606,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-29T21:13:22+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/usage/caa5bdc0-5a6c-41c0-8818-16337dca0484/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/usage/4b457ec1-5e8e-4c26-a5ff-d3d360d8bcb9/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-29T21:13:22+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 13
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/2803606b-4085-4e84-8765-4b5050297000/29b3d50e0c5192aa9648d8cf61cab563b85e814d/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/2f1c19a7-841e-454a-9bf9-e218d2228f61/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/7fc03301-34ea-49ee-ab02-82d1e28949e0/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/a095d1ed-003c-4e7d-93e8-26e8c31d2487/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/a903e107-77f1-4f70-a2de-efbf47de58d1/4569759ea258126a1ed6a243ef09150f5ddbfd07/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/usage/4b457ec1-5e8e-4c26-a5ff-d3d360d8bcb9/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/usage/caa5bdc0-5a6c-41c0-8818-16337dca0484/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/8d65d5ce-34db-4bfb-86ed-f8a873a21ecf",
     "@type": [
@@ -2308,6 +2483,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/29b3d50e0c5192aa9648d8cf61cab563b85e814d/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/2803606b-4085-4e84-8765-4b5050297000/29b3d50e0c5192aa9648d8cf61cab563b85e814d/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "29b3d50e0c5192aa9648d8cf61cab563b85e814d"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/2ad0583c41a1f05e8c6acfda5714b204af83aaca/log/generate_some_data_test.Rout",
     "@type": [
@@ -2414,6 +2616,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/86acd209-edf9-4309-a5cf-f6988be74cf6/generation/02316afa-7a6d-49ab-acc3-3b81b323fac5/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/7fc03301-34ea-49ee-ab02-82d1e28949e0/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2476,6 +2681,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/4569759ea258126a1ed6a243ef09150f5ddbfd07/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/a903e107-77f1-4f70-a2de-efbf47de58d1/4569759ea258126a1ed6a243ef09150f5ddbfd07/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "4569759ea258126a1ed6a243ef09150f5ddbfd07"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/4a2aae2b5ebfb038a7f04146f3a8030310dbd1a0/data/some_data_test/data_info_some_data_test.json",
     "@type": [
@@ -2582,6 +2814,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/86acd209-edf9-4309-a5cf-f6988be74cf6/generation/8410dd85-c7c8-437b-bb41-a6b558d4d2d3/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/a095d1ed-003c-4e7d-93e8-26e8c31d2487/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2902,6 +3137,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/86acd209-edf9-4309-a5cf-f6988be74cf6/generation/ee67e3d7-c27a-46e9-901a-f758981369c8/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/8a2be7a8-5d92-44e3-a950-c8a301b428b0/generation/2f1c19a7-841e-454a-9bf9-e218d2228f61/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-22 23:05:04"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-29 23:13:15"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-  8.293   2.070  11.049 
+  5.920   1.617   6.397