.renku/activity_index.yaml

@@ -3,6 +3,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
   08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
   - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
+  0e8143ca484fa77f033cb385ca8499b7251c8e3d:
+  - .renku/workflow/cf10dc94fc3c4226837f8717eb8a3b5b_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -32,6 +34,8 @@ data/some_data_test/data_info_some_data_test.json:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
   08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
   - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
+  0e8143ca484fa77f033cb385ca8499b7251c8e3d:
+  - .renku/workflow/cf10dc94fc3c4226837f8717eb8a3b5b_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -61,6 +65,8 @@ data/some_data_test/feature_some_data_test.json:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
   08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
   - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
+  0e8143ca484fa77f033cb385ca8499b7251c8e3d:
+  - .renku/workflow/cf10dc94fc3c4226837f8717eb8a3b5b_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -90,6 +96,8 @@ data/some_data_test/meta_some_data_test.json:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
   08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
   - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
+  0e8143ca484fa77f033cb385ca8499b7251c8e3d:
+  - .renku/workflow/cf10dc94fc3c4226837f8717eb8a3b5b_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
@@ -119,6 +127,8 @@ log/generate_some_data_test.Rout:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
   08f7e3d1a3f3333cf9371858d95aa8a081e3b943:
   - .renku/workflow/f2b853c7e09944069014543f79850b82_rerun.yaml
+  0e8143ca484fa77f033cb385ca8499b7251c8e3d:
+  - .renku/workflow/cf10dc94fc3c4226837f8717eb8a3b5b_rerun.yaml
   15ab45d73223f29be9120b887cbc5fd6e821be62:
   - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:

.renku/provenance.json

@@ -46,6 +46,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/0627aceb-66c2-4f10-bf9a-dfcd9d1a19ba"
+      },
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
       }
     ]
   },
@@ -1609,6 +1612,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-12T21:16:37+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/usage/728e575f-36ae-4b81-a18d-cf492901ec77/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/usage/e4e89e68-ee5f-490b-8271-8d2cfa2163f7/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-12T21:16:37+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 15
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/2b2f14b8-eadb-41a6-b84d-63be10f9d816/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/54171adf-075c-4fce-aa3d-8a719ad3e5ad/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/7eb35712-9646-40a7-a5cd-8ca882d1e983/9183624f67d491d19e89e9c6ad0a6722acc1ff22/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/7fff2e45-bd09-4e7b-9fe9-223e2e7bf51c/fb59c4ceced0a573d2d5938501e429b7d4f98e2a/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/d8d2d4ee-763a-4a90-9536-786906a58dd5/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/usage/728e575f-36ae-4b81-a18d-cf492901ec77/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/usage/e4e89e68-ee5f-490b-8271-8d2cfa2163f7/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/afef37bc-6edb-4b35-b9dc-0f9f6d15ef30",
     "@type": [
@@ -2824,6 +2999,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/0627aceb-66c2-4f10-bf9a-dfcd9d1a19ba/generation/b17f6bf1-4f02-4a9f-b529-7e24091a56e9/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/54171adf-075c-4fce-aa3d-8a719ad3e5ad/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3025,6 +3203,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/0627aceb-66c2-4f10-bf9a-dfcd9d1a19ba/generation/ec8e6a4c-0846-42f5-a436-c8ecc81c59f8/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/d8d2d4ee-763a-4a90-9536-786906a58dd5/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3168,6 +3349,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/9183624f67d491d19e89e9c6ad0a6722acc1ff22/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/7eb35712-9646-40a7-a5cd-8ca882d1e983/9183624f67d491d19e89e9c6ad0a6722acc1ff22/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "9183624f67d491d19e89e9c6ad0a6722acc1ff22"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
     "@type": [
@@ -3378,6 +3586,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/0627aceb-66c2-4f10-bf9a-dfcd9d1a19ba/generation/bf472753-10ed-4373-bd2c-8eb3d647109d/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/2b2f14b8-eadb-41a6-b84d-63be10f9d816/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3467,6 +3678,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/fb59c4ceced0a573d2d5938501e429b7d4f98e2a/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/95e98824-f9c8-4b26-be3d-3d0ae2a1b17d/generation/7fff2e45-bd09-4e7b-9fe9-223e2e7bf51c/fb59c4ceced0a573d2d5938501e429b7d4f98e2a/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "fb59c4ceced0a573d2d5938501e429b7d4f98e2a"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3",
     "@type": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-05 23:07:55"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-12 23:16:26"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-  8.532   2.291  11.929 
+ 10.453   1.571  11.396