.renku/activity_index.yaml

@@ -11,6 +11,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
+  - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
@@ -32,6 +34,8 @@ data/some_data_test/data_info_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
+  - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
@@ -53,6 +57,8 @@ data/some_data_test/feature_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
+  - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
@@ -74,6 +80,8 @@ data/some_data_test/meta_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
+  - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:
@@ -95,6 +103,8 @@ log/generate_some_data_test.Rout:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
+  - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
   - .renku/workflow/4772b3bd4db24782a9c3c00b1ec6248f_rerun.yaml
   e1eabc4a60a3824cc9a80a0d8247a69f3f95dedf:

.renku/provenance.json

@@ -34,6 +34,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c6257af4-491f-42b1-a1cf-4b1ce94b915e"
+      },
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
       }
     ]
   },
@@ -49,6 +52,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-15T21:13:24+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/usage/f90432ac-5b3b-4cec-86c7-d236f60810b1/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/usage/fa1df11f-5e35-4ec3-aa1c-6ae0b5fc2669/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-15T21:13:24+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 11
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/06075428-8568-4dee-9dcd-fa56e01857cf/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/97e6b348-a2bc-4c33-a6a0-8d6df4716d96/ed16c252acdf9714ac2bc4cf580589cb8f603009/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/9ac3a303-330f-4720-9519-b0db7b950dd2/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/f227d441-af94-47b5-b6de-6754006f0750/bbe4cf5522fcd4573c940cdfe18b0bd77b5e0861/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/f32d3602-ce9d-41fb-bbec-e29ffc1becc5/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/usage/f90432ac-5b3b-4cec-86c7-d236f60810b1/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/usage/fa1df11f-5e35-4ec3-aa1c-6ae0b5fc2669/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/3576214f-e373-44d2-8af4-847a6c2df764",
     "@type": [
@@ -2004,6 +2179,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c6257af4-491f-42b1-a1cf-4b1ce94b915e/generation/57781706-8676-422c-b212-334a268771f1/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/9ac3a303-330f-4720-9519-b0db7b950dd2/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2166,6 +2344,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c6257af4-491f-42b1-a1cf-4b1ce94b915e/generation/e8c5ec91-8833-4cc4-8a03-ffbed73db5ea/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/06075428-8568-4dee-9dcd-fa56e01857cf/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2331,6 +2512,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/bbe4cf5522fcd4573c940cdfe18b0bd77b5e0861/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/f227d441-af94-47b5-b6de-6754006f0750/bbe4cf5522fcd4573c940cdfe18b0bd77b5e0861/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "bbe4cf5522fcd4573c940cdfe18b0bd77b5e0861"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/c358822f783a429be3e2a055307b18b4a2bf0bd6/data/some_data_test/data_info_some_data_test.json",
     "@type": [
@@ -2453,6 +2661,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/c6257af4-491f-42b1-a1cf-4b1ce94b915e/generation/8591fd8e-e7c2-4b1e-8937-9fdb099b607e/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/f32d3602-ce9d-41fb-bbec-e29ffc1becc5/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2488,6 +2699,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/ed16c252acdf9714ac2bc4cf580589cb8f603009/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/0673e0da-4091-4fe0-afaf-9bb6624e08bc/generation/97e6b348-a2bc-4c33-a6a0-8d6df4716d96/ed16c252acdf9714ac2bc4cf580589cb8f603009/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "ed16c252acdf9714ac2bc4cf580589cb8f603009"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/f66e958746edbadb1a0d39902f3608e09f5a30ca/log/generate_some_data_test.Rout",
     "@type": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-08 23:05:07"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-15 23:13:14"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-   8.38    2.49   10.94 
+  8.560   2.436  10.840