.renku/activity_index.yaml

 data/some_data_test/counts_some_data_test.mtx.gz:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  15ab45d73223f29be9120b887cbc5fd6e821be62:
+  - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
   - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
@@ -24,6 +26,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
 data/some_data_test/data_info_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  15ab45d73223f29be9120b887cbc5fd6e821be62:
+  - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
   - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
@@ -47,6 +51,8 @@ data/some_data_test/data_info_some_data_test.json:
 data/some_data_test/feature_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  15ab45d73223f29be9120b887cbc5fd6e821be62:
+  - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
   - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
@@ -70,6 +76,8 @@ data/some_data_test/feature_some_data_test.json:
 data/some_data_test/meta_some_data_test.json:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  15ab45d73223f29be9120b887cbc5fd6e821be62:
+  - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
   - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:
@@ -93,6 +101,8 @@ data/some_data_test/meta_some_data_test.json:
 log/generate_some_data_test.Rout:
   01a87196e421fdd5eee126fa9b383fd4e0320894:
   - .renku/workflow/1b179e6fba2a4523a7d2788298f7f4dd_rerun.yaml
+  15ab45d73223f29be9120b887cbc5fd6e821be62:
+  - .renku/workflow/4bceba71c35048e3ae99e9fc77b8e72f_rerun.yaml
   393161988bd77cab5e0656542adb55cc9a48efed:
   - .renku/workflow/59e87aa9a7824f0bb465c4bcf99d3a99_rerun.yaml
   4eaf55be5bb293b023d027265606642b1fc185a2:

.renku/provenance.json

@@ -37,6 +37,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/e9128fa6-0f2b-47f6-aa18-3f4063bf8b35"
+      },
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
       }
     ]
   },
@@ -1600,6 +1603,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-22T21:05:13+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/usage/429e483d-ee5c-427d-98b7-0094b95758cb/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/usage/6b4489b3-b682-47c6-a9b9-a11a0542e812/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-07-22T21:05:13+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 12
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/4e7cac2a-4a64-4488-93a7-d2866a9b1c4a/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/798b6bdb-569f-462c-882a-823836095a2d/24d12ebedcbd2c8e90e2d794d383317e751db9a1/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/9bf05334-7c44-4453-803f-09ab22d226b1/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/d1a25685-060e-4ab3-a853-327704910992/192c5efef2c83ac1df6d75f4391ad96c025cb20a/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/ebb0a4d1-a9c9-44aa-bb44-2be94307799e/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/usage/429e483d-ee5c-427d-98b7-0094b95758cb/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/usage/6b4489b3-b682-47c6-a9b9-a11a0542e812/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/d1ce450a-ebd3-4d58-a1e8-3d7cfe138a49",
     "@type": [
@@ -2052,6 +2227,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/192c5efef2c83ac1df6d75f4391ad96c025cb20a/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/d1a25685-060e-4ab3-a853-327704910992/192c5efef2c83ac1df6d75f4391ad96c025cb20a/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "192c5efef2c83ac1df6d75f4391ad96c025cb20a"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/1d9c9b07d0d81ddcdbd9feb659943da64ca2d927/data/some_data_test/data_info_some_data_test.json",
     "@type": [
@@ -2079,6 +2281,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/24d12ebedcbd2c8e90e2d794d383317e751db9a1/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/798b6bdb-569f-462c-882a-823836095a2d/24d12ebedcbd2c8e90e2d794d383317e751db9a1/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "24d12ebedcbd2c8e90e2d794d383317e751db9a1"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/2ad0583c41a1f05e8c6acfda5714b204af83aaca/log/generate_some_data_test.Rout",
     "@type": [
@@ -2182,6 +2411,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/e9128fa6-0f2b-47f6-aa18-3f4063bf8b35/generation/a5fe772e-c366-4633-8e03-7f3a053290ea/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/4e7cac2a-4a64-4488-93a7-d2866a9b1c4a/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2347,6 +2579,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/e9128fa6-0f2b-47f6-aa18-3f4063bf8b35/generation/207ca08d-cb6f-441c-8543-75b80a427cb5/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/9bf05334-7c44-4453-803f-09ab22d226b1/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -2664,6 +2899,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/e9128fa6-0f2b-47f6-aa18-3f4063bf8b35/generation/4b959d0a-2ffd-4ec6-82e3-53ef14af1e71/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/d14549ef-a0fa-43fa-82ff-0e8dfbf66f67/generation/ebb0a4d1-a9c9-44aa-bb44-2be94307799e/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-15 23:13:14"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-07-22 23:05:04"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
-  8.560   2.436  10.840 
+  8.293   2.070  11.049