.renku/activity_index.yaml

@@ -17,6 +17,8 @@ data/some_data_test/counts_some_data_test.mtx.gz:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  bf89403ea752014ca60d0d4af5913cefe6a45592:
+  - .renku/workflow/b897b7d999ca47b584e53f01cbce41af_rerun.yaml
   ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
   - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
@@ -48,6 +50,8 @@ data/some_data_test/data_info_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  bf89403ea752014ca60d0d4af5913cefe6a45592:
+  - .renku/workflow/b897b7d999ca47b584e53f01cbce41af_rerun.yaml
   ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
   - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
@@ -79,6 +83,8 @@ data/some_data_test/feature_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  bf89403ea752014ca60d0d4af5913cefe6a45592:
+  - .renku/workflow/b897b7d999ca47b584e53f01cbce41af_rerun.yaml
   ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
   - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
@@ -110,6 +116,8 @@ data/some_data_test/meta_some_data_test.json:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  bf89403ea752014ca60d0d4af5913cefe6a45592:
+  - .renku/workflow/b897b7d999ca47b584e53f01cbce41af_rerun.yaml
   ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
   - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:
@@ -141,6 +149,8 @@ log/generate_some_data_test.Rout:
   - .renku/workflow/3d5519b9c2c1443ab5c0287b83070146_rerun.yaml
   a90535f294fc0cdc4bc9efbc8d006c1c36c4b0bb:
   - .renku/workflow/a014950b639048f39135f2d8f643caef_rerun.yaml
+  bf89403ea752014ca60d0d4af5913cefe6a45592:
+  - .renku/workflow/b897b7d999ca47b584e53f01cbce41af_rerun.yaml
   ceb53c5a28d8c7c0f481769cbbb4644e6a3d7261:
   - .renku/workflow/87b7c3d3edd34beaa4f160728cb6e59d_rerun.yaml
   de71da21905ce8c3808b3b90fef2ae29fe614853:

.renku/provenance.json

@@ -49,6 +49,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/f87b8bda-e6f9-46f0-81d0-635f4b8f355d"
+      },
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
       }
     ]
   },
@@ -1440,6 +1443,178 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2",
+    "@type": [
+      "http://www.w3.org/ns/prov#Activity"
+    ],
+    "http://www.w3.org/ns/prov#endedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-19T21:08:24+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedAssociation": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/association"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedUsage": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/usage/bba48fa0-a5f7-45c7-8ae6-59888a3e9116/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      },
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/usage/e015ea54-57a6-49b8-a6d5-eb09ba86df53/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#startedAtTime": [
+      {
+        "@type": "http://www.w3.org/2001/XMLSchema#dateTime",
+        "@value": "2021-08-19T21:08:24+00:00"
+      }
+    ],
+    "http://www.w3.org/ns/prov#wasAssociatedWith": [
+      {
+        "@id": "mailto:anthony.sonrel@uzh.ch"
+      },
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#order": [
+      {
+        "@value": 16
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/association",
+    "@type": [
+      "http://www.w3.org/ns/prov#Association"
+    ],
+    "http://www.w3.org/ns/prov#agent": [
+      {
+        "@id": "https://github.com/swissdatasciencecenter/renku-python/tree/v0.15.1"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadPlan": [
+      {
+        "@id": "https://renkulab.io/plans/2ae8cd74-eacc-4319-b2fb-3aabfe58b5b3"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/309ce279-54ae-4cfa-b371-c0e35a920ca0/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/fa4600cf42664db1869a3814bcf75734"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/9ae11fa1-a08b-441f-b50d-b716aa58d416/84f13de988fa962259fb99a9f895b909f7ecdd87/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/bb517f6b5959481a8b0507a08b9cd377"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/c872a573-20b2-4494-be61-3d92f5eea16f/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f8b61b2380b24e95928f5749bb648336"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/d14a7209-def6-4c5f-902f-eff752873ab4/c4a9f6d42847b7da3e216656256ed73cbff9639c/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/5"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/fca7e746-1969-4a18-8ae5-747f3c1186e6/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json",
+    "@type": [
+      "http://www.w3.org/ns/prov#Generation"
+    ],
+    "http://www.w3.org/ns/prov#activity": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "outputs/f7604dad371440f28aa756a515d01278"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/usage/bba48fa0-a5f7-45c7-8ae6-59888a3e9116/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/c95670f45ef1c003901a468b5eddb00467b37625/src/data-test-sched.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/4"
+      }
+    ]
+  },
+  {
+    "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/usage/e015ea54-57a6-49b8-a6d5-eb09ba86df53/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R",
+    "@type": [
+      "http://www.w3.org/ns/prov#Usage"
+    ],
+    "http://www.w3.org/ns/prov#entity": [
+      {
+        "@id": "https://renkulab.io/blob/9c41e4015c234c9b6e8365857e0a2ebf786c55e6/src/r_utils.R"
+      }
+    ],
+    "http://www.w3.org/ns/prov#hadRole": [
+      {
+        "@value": "inputs/79ce4b55bdcf47b0ac4ecd6b02d44616"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/activities/8a1bb493-b77a-4b1c-a62b-6133eafe8415",
     "@type": [
@@ -3002,6 +3177,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/f87b8bda-e6f9-46f0-81d0-635f4b8f355d/generation/81a3b13e-dd7c-458e-bea2-1d1d14707c1d/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/fca7e746-1969-4a18-8ae5-747f3c1186e6/2c7496a91275249afe95a3aa6f8d5b915ad04c53/data/some_data_test/meta_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3206,6 +3384,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/f87b8bda-e6f9-46f0-81d0-635f4b8f355d/generation/496a39f4-bc33-460b-87b0-f81e35bfec8e/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
+      },
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/c872a573-20b2-4494-be61-3d92f5eea16f/5220c06ada7f29ba4b4ed33049581024a742bcbd/data/some_data_test/counts_some_data_test.mtx.gz"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
@@ -3322,6 +3503,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/84f13de988fa962259fb99a9f895b909f7ecdd87/data/some_data_test/data_info_some_data_test.json",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/9ae11fa1-a08b-441f-b50d-b716aa58d416/84f13de988fa962259fb99a9f895b909f7ecdd87/data/some_data_test/data_info_some_data_test.json"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "84f13de988fa962259fb99a9f895b909f7ecdd87"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/8bf9156840f323a99191a89fdfee6961852d573a/log/generate_some_data_test.Rout",
     "@type": [
@@ -3479,6 +3687,33 @@
       }
     ]
   },
+  {
+    "@id": "https://renkulab.io/blob/c4a9f6d42847b7da3e216656256ed73cbff9639c/log/generate_some_data_test.Rout",
+    "@type": [
+      "http://purl.org/wf4ever/wfprov#Artifact",
+      "http://www.w3.org/ns/prov#Entity"
+    ],
+    "http://www.w3.org/2000/01/rdf-schema#label": [
+      {
+        "@value": "log/generate_some_data_test.Rout@UNCOMMITTED"
+      }
+    ],
+    "http://www.w3.org/ns/prov#atLocation": [
+      {
+        "@value": "log/generate_some_data_test.Rout"
+      }
+    ],
+    "http://www.w3.org/ns/prov#qualifiedGeneration": [
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/d14a7209-def6-4c5f-902f-eff752873ab4/c4a9f6d42847b7da3e216656256ed73cbff9639c/log/generate_some_data_test.Rout"
+      }
+    ],
+    "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [
+      {
+        "@value": "c4a9f6d42847b7da3e216656256ed73cbff9639c"
+      }
+    ]
+  },
   {
     "@id": "https://renkulab.io/blob/c84b152db9ce7772fab62a385c5bec70962f0cc7/log/generate_some_data_test.Rout",
     "@type": [
@@ -3589,6 +3824,9 @@
       },
       {
         "@id": "https://renkulab.io/activities/f87b8bda-e6f9-46f0-81d0-635f4b8f355d/generation/f817c20a-866b-4de9-929b-a28e025cb9ef/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
+      },
+      {
+        "@id": "https://renkulab.io/activities/76cb7025-7106-42f9-bf67-9071436181f2/generation/309ce279-54ae-4cfa-b371-c0e35a920ca0/cb94b0c258016ee703452fa0f48329780654da1f/data/some_data_test/feature_some_data_test.json"
       }
     ],
     "https://swissdatasciencecenter.github.io/renku-ontology#checksum": [

data/some_data_test/data_info_some_data_test.json

-{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-12 23:16:26"],"n_cells":[200],"n_genes":[100]}
+{"link":["link to study"],"tissue":["tissue"],"description":["A complete description about the experimental design,\n\n                     for e.g. the treatment, condition, specificities, etc."],"note":["Any comment on the importance of this dataset for the benchmark,\n\n              e.g., 'example of unbalanced sample sizes'."],"last.update":["2021-08-19 23:08:12"],"n_cells":[200],"n_genes":[100]}

log/generate_some_data_test.Rout

@@ -139,4 +139,4 @@ loaded via a namespace (and not attached):
 > 
 > proc.time()
    user  system elapsed 
- 10.453   1.571  11.396 
+ 10.257   1.167  13.571