Commit c5ac7d2e authored by Andrej Benjak's avatar Andrej Benjak
Browse files

velocity and spatial

parent 2d0333a2
Pipeline #36559 passed with stage
in 52 seconds
[
{
"index": "GRCm38.gencode.vM21.chr18.chr19.transcripts.introns.sidx",
"source": "GENCODEtxintron",
"organism": "Mus musculus",
"release": "M21",
"genome": "GRCm38",
"fasta": ["/work/adv_scrnaseq_2020/data/spermatogenesis_subset/txintron/GRCm38.gencode.vM21.chr18.chr19.transcripts.introns.fa"],
"gtf": "/work/adv_scrnaseq_2020/data/spermatogenesis_subset/txintron/GRCm38.gencode.vM21.chr18.chr19.transcripts.introns.gtf",
"sha256": "c21f15bc9f33bbc6eb541492c4075d6b8ecf7a9af1e43860fa8dcac115e26f2a"
}
]
{
"index_version": 4,
"reference_gfa": [
"/work/adv_scrnaseq_2020/data/spermatogenesis_subset/txintron/GRCm38.gencode.vM21.chr18.chr19.transcripts.introns.sidx"
],
"sampling_type": "dense",
"k": 31,
"num_kmers": 139763030,
"num_contigs": 1058268,
"seq_length": 171511070,
"have_ref_seq": true,
"have_edge_vec": false,
"SeqHash": "c21f15bc9f33bbc6eb541492c4075d6b8ecf7a9af1e43860fa8dcac115e26f2a",
"NameHash": "549044d1d1cdc73f210dfbe464d68eb1264522df1c52c05cae736a15639f1097",
"SeqHash512": "2f317b50be6abfe904805f88d5cc7febbf597709e918e093c95b98ebb6b44930be1c798d8d8cddb5296544e409c8abb593ce7cebaaee7fc37ca2e10633cdd7eb",
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"DecoySeqHash": "76f9eee5b3f89a293c65c9b1e5d015924784d71470e74d186a73854e849def11",
"DecoyNameHash": "b10e5ee0b443907679b30eb13b9f514e8b8417e9fe36ea4ffd7c91ec425eef70",
"num_decoys": 2,
"first_decoy_index": 24172,
"keep_duplicates": false
}
\ No newline at end of file
[2020-05-28 09:02:31.641] [jLog] [info] building index
[2020-05-28 09:08:20.189] [jLog] [info] done building index
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