Commits · e937cd4c3329cf78ae843b33fcf66eaec6fd0ee2 · Andrej Benjak / adv_scrnaseq_2020.v2

May 20, 2020
- renku dataset: committing 18 newly added files · e937cd4c
  Alma Andersson authored May 20, 2020
  
  e937cd4c
- service: dataset create spatial-transcriptomics · efbd343e
  Alma Andersson authored May 20, 2020
  
  efbd343e
- service: dataset create spatial · 2ff44140
  Alma Andersson authored May 20, 2020
  
  2ff44140
- add Pan's requirements · 73ed4138
  Michael Stadler authored May 20, 2020
  
  73ed4138
May 19, 2020
- add sinfo python package · 1aae39d3
  Michael Stadler authored May 19, 2020
  
  1aae39d3
May 18, 2020
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · cc7f07a3
  Michael Stadler authored May 18, 2020
  
  cc7f07a3
- add required R package "fishpond" · 4dcb5c34
  Michael Stadler authored May 18, 2020
  
  4dcb5c34
May 17, 2020
- service: dataset add spermatogenesis_rnavelocity... · 4e674be7
  Charlotte Soneson authored May 17, 2020
```
service: dataset add spermatogenesis_rnavelocity AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce_nometa.h5ad AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce_nometa.rds
```
  4e674be7
- renku dataset: committing 2 newly added files · e39f95a4
  Charlotte Soneson authored May 17, 2020
  
  e39f95a4
- service: dataset create spermatogenesis_rnavelocity · e11b838b
  Charlotte Soneson authored May 17, 2020
  
  e11b838b
- renku dataset rm spermatogenesis_rnavelocity · 27d4594e
  Charlotte Soneson authored May 17, 2020
  
  27d4594e
- Merge branch 'master' of https://renkulab.io/gitlab/stadler.michael/adv_scrnaseq_2020 · f5483fad
  Charlotte Soneson authored May 17, 2020
  
  f5483fad
- Remove velocity files · 41320e69
  Charlotte Soneson authored May 17, 2020
  
  41320e69
- service: dataset create spermatogenesis_rnavelocity · 4be72e38
  Charlotte Soneson authored May 17, 2020
  
  4be72e38
- renku dataset rm spermatogenesis_rnavelocity · 0f7db0ef
  Charlotte Soneson authored May 17, 2020
  
  0f7db0ef
- renku dataset add spermatogenesis_rnavelocity... · 906b8350
  Charlotte Soneson authored May 17, 2020
```
renku dataset add spermatogenesis_rnavelocity https://www.dropbox.com/s/huitspgjuuaxdvb/AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce_nometa.h5ad?dl=1
```
  906b8350
- renku dataset: committing 1 newly added files · 2687b377
  Charlotte Soneson authored May 17, 2020
  
  2687b377
- make data file non-executable · 53e9b7ed
  Michael Stadler authored May 17, 2020
  
  53e9b7ed
- renku dataset add spermatogenesis_rnavelocity... · b314935d
  Michael Stadler authored May 17, 2020
```
renku dataset add spermatogenesis_rnavelocity data/spermatogenesis_rnavelocity/AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce_nometa.rds
```
  b314935d
- renku dataset create -t spermatogenesis_rnavelocity -d SingleCellExperiment... · 3bd7125a
  Michael Stadler authored May 17, 2020
```
renku dataset create -t spermatogenesis_rnavelocity -d SingleCellExperiment with spliced and unspliced counts for RNA velocity analysis -c Michael Stadler <stadler.michael@gmail.com> [] spermatogenesis_rnavelocity
```
  3bd7125a
- renku dataset rm spermatogenesis_rnavelocity · ded276fd
  Michael Stadler authored May 17, 2020
  
  ded276fd
- renku dataset rm rna_velocity_data · f0dac5a6
  Michael Stadler authored May 17, 2020
  
  f0dac5a6
- create software_info.txt · b1d927fa
  Michael Stadler authored May 17, 2020
  
  b1d927fa
- cleanup Dockerfile · 458fb8c9
  Michael Stadler authored May 17, 2020
  
  458fb8c9
- install salmon from conda · 958d8a30
  Michael Stadler authored May 17, 2020
  
  958d8a30
- also set PATH within Dockerfile · 89a51b00
  Michael Stadler authored May 17, 2020
  
  89a51b00
May 14, 2020
- Merge branch 'master' of renkulab.io:stadler.michael/adv_scrnaseq_2020 · b66a6f62
  Michael Stadler authored May 14, 2020
```
Conflicts:
	.gitattributes
	data/spermatogenesis_rnavelocity/AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce_nometa.rds
```
  b66a6f62
- cleanup attributes · c0271ddc
  Michael Stadler authored May 14, 2020
  
  c0271ddc
- remove attributes for non-existing files · 12fe52a1
  Michael Stadler authored May 14, 2020
  
  12fe52a1
May 13, 2020
- Swap velocity SCE · a8752891
  Charlotte Soneson authored May 13, 2020
  
  a8752891
- Swap velocity SCE · 49bb18dd
  Charlotte Soneson authored May 13, 2020
  
  49bb18dd
- set RETICULATE_PYTHON · 8947315b
  Michael Stadler authored May 13, 2020
  
  8947315b
- set RETICULATE_PYTHON · 08847d25
  Michael Stadler authored May 13, 2020
  
  08847d25
- check if all R packages installed correctly · 7ba9e0cf
  Michael Stadler authored May 13, 2020
  
  7ba9e0cf
- check if all R packages installed correctly · 6a789530
  Michael Stadler authored May 13, 2020
  
  6a789530
- service: dataset add spermatogenesis_rnavelocity... · a5aac1ba
  Charlotte Soneson authored May 13, 2020
```
service: dataset add spermatogenesis_rnavelocity AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce.rds
```
  a5aac1ba
- service: dataset add spermatogenesis_rnavelocity... · 55bd52c5
  Charlotte Soneson authored May 13, 2020
```
service: dataset add spermatogenesis_rnavelocity AdultMouseRep3_alevin_GRCm38.gencode.vM21.spliced.intron.fl90.gentrome.k31_sce.rds
```
  55bd52c5
- renku dataset: committing 1 newly added files · 641ded9f
  Charlotte Soneson authored May 13, 2020
  
  641ded9f
- renku dataset: committing 1 newly added files · f53f6bc5
  Charlotte Soneson authored May 13, 2020
  
  f53f6bc5
- service: dataset create spermatogenesis_rnavelocity · 90dabf41
  Charlotte Soneson authored May 13, 2020
  
  90dabf41